Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004931

Physical Location & Seq

Genomic Coordinates Forward (+)

9238296 .. 9242481

Gene Structure 4186 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G21590.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1572 bp

ATGGATTCTTCTTACTCCTTTGCCTTGGGGACAAGTAGTTCTATTTTGCCAAAACTCAGTTTCAGGAATGTAGAGAACAGATTTTATGGTGAGAAGAACAACAACAATGGTTTGTGTAAACGTTTTGGATCAGATTTGGGCTCCAAGAAGTTTAGGAATCAAAAGTTCAAGCACGGTGTTGTTTACGCTGTTGCCACTTCAGATAATCCAAAAAAGGCTATGACAGTAAAGACTTCCATGTTTGAGAGAAGAAAGGTAGACCCGCAAAATGTGGCTGCAATCATTCTAGGAGGAGGCAATGGAGCTAAACTCTTCCCTCTTACAATGAGAGCCGCAACACCAGCTGTTCCTGTTGGTGGATGCTACAGGCTGATCGATATCCCGATGAGTAACTGTATTAACAGCTGCATCAACAAGATATTTGTGCTGACACAGTTCAACTCAGCTTCCCTTAATCGACATTTAGCACGAACTTATTTTGGGAATGGCATAAACTTTGGAGGTGGTTTCGTAGAGGTTCTTGCTGCTACACAAACACCAGGGGAAGCTGGGAAGAAGTGGTTTCAAGGAACAGCAGATGCTGTCAGAAAATTCCTCTGGGTGTTTGAGGATGCCAAGAACAGGAACATTGAGAACATACTTATTTTGTCTGGAGATCATCTCTATAGAATGAACTACATGGACTTTGTTCAGTCTCATGTGGATAGTAATGCGGATATTACTCTTTCGTGTGCACCAGTTAGTGAAAGCCGTGCATCAAATTTTGGTCTAGTAAAGATTGATCGAGGTGGGCGTGTAATCCATTTCTCCGAGAAACCAACAGGAGTCGACCTGAAATCAATGCAAACAGACACAACAATGCTTGGACTGTCTCATCAAGAAGCAACAGATTCTCCATACATTGCATCAATGGGAGTTTATTGTTTCAAAACCGAAGCTTTGCTGAACCTTCTAACAAGACAGTATCCGAGTTCCAATGACTTTGGATCTGAAGTTATTCCTGCAGCCATAAGAGATCACGATGTTCAAGGATACATATTCAGAGATTACTGGGAGGATATTGGAACTATAAAGACATTTTATGAGGCTAATTTAGCTCTTGTTGAGGAGCGACCAAAGTTTGAATTCTATGATCCAGAAACTCCGTTCTACACTTCTCCTCGGTTCCTCCCACCAACAAAAGCTGAGAAATGTCGGATGGTAGATTCAATAATCTCACATGGATGTTTCCTGCGAGAATGCAGCGTCCAACGTTCAATCATTGGTGAACGATCACGTCTAGACTACGGGGTTGAGCTTCAGGATACATTGATGTTAGGTGCAGATTACTACCAAACTGAGTCTGAGATTGCATCTCTATTAGCAGAAGGAAAGGTTCCAATTGGTATTGGTAAAGACACAAAAATCAGGAAATGCATCATTGACAAGAATGCTAAGATCGGTAAAAACGTGATCATCATGAACAAAGGCGATGTACAAGAAGCAGATAGGCCAGAGGAAGGATTCTACATTCGATCAGGAATCACTGTGATAGTCGAAAAGGCGACAATTCAAGATGGTACTGTAATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005976 GO:0005982 GO:0006073 GO:0008150 GO:0008152 GO:0008878 GO:0009058 GO:0009059 GO:0009250 GO:0009501 GO:0009507 GO:0009536 GO:0009987 GO:0010170 GO:0016051 GO:0016740 GO:0016772 GO:0016779 GO:0019252 GO:0032991 GO:0033692 GO:0034637 GO:0034645 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0061695 GO:0070566 GO:0071704 GO:1901576 GO:1902494 GO:1902503 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00500 ko00520 ko01100 ko01110 ko02026 map00500 map00520 map01100 map01110 map02026

Pfam Domains

Protein Families

NTP_transferase

Protein Analysis

523

Amino Acids

58.2

Weight (kDa)

8.36

Isoelectric Point (pI)

36.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NTP_transferase	PF00483	93 - 368	1.5e-66	Nucleotidyl transferase
LbH_GLGC	PF25247	388 - 522	1.4e-50	GLGC left-handed parallel beta-helix domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004931)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21590 AT2G21590 AT2G21590 AT2G21590 AT2G21590 AT2G21590 AT2G21590 AT4G39210 AT4G39210
fragaria_vesca	FvH4_2g09250 FvH4_2g09250 FvH4_2g09250 FvH4_2g09250
malus_domestica	MD05G1063400.v1.1 MD10G1072000.v1.1
prunus_persica	Prupe.8G093400_v2.0.a1 Prupe.8G093900_v2.0.a1
pyrus_communis	pycom05g05490 pycom10g05710
rosa_chinensis	RchiOBHm_Chr6g0265271
rosa_laevigata	RLG00000014206
rosa_multiflora	Rmu_sc0004967.1_g000006
rosa_roxburghii	Rroxscaffold_175G00432260
rosa_rugosa	Rorug06G0016200 Rorug06G0016300
rosa_samantha	Rh6AG137800 Rh6BG136600 Rh6CG134900 Rh6DG121200
rosa_wichuraiana	Rw6G011900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	258, 828
AciI	CCGC	3 cut(s)	263, 333, 713
AclI	AACGTT	2 cut(s)	121, 1252
AclWI	GGATC	3 cut(s)	136, 994, 1127
AcsI	RAATTY	3 cut(s)	590, 760, 1124
AcuI	CTGAAG	3 cut(s)	183, 1011, 1283
AfaI	GTAC	2 cut(s)	1476, 1561
AfiI	CCNNNNNNNGG	3 cut(s)	356, 621, 1499
AgsI	TTSAA	9 cut(s)	169, 439, 566, 928, 1028, 1124, 1209, 1257, 1553
AjiI	CACGTC	1 cut(s)	1277
AjnI	CCWGG	1 cut(s)	538
AloI	GAACNNNNNNTCC	2 cut(s)	22, 54
AluBI	AGCT	9 cut(s)	305, 344, 405, 446, 548, 938, 1097, 1184, 1297
AluI	AGCT	9 cut(s)	305, 344, 405, 446, 548, 938, 1097, 1184, 1297
Alw21I	GWGCWC	1 cut(s)	736
Alw26I	GTCTC	2 cut(s)	699, 876
Alw44I	GTGCAC	1 cut(s)	732
AlwI	GGATC	3 cut(s)	136, 994, 1127
AlwNI	CAGNNNCTG	1 cut(s)	581
AoxI	GGCC	1 cut(s)	1490
ApaLI	GTGCAC	1 cut(s)	732
ApeKI	GCWGC	5 cut(s)	275, 405, 524, 1004, 1242
ApoI	RAATTY	3 cut(s)	590, 760, 1124
Asp700I	GAANNNNTTC	1 cut(s)	996
AsuHPI	GGTGA	2 cut(s)	101, 1277
BaeGI	GKGCMC	1 cut(s)	736
BanII	GRGCYC	1 cut(s)	143
Bbv12I	GWGCWC	1 cut(s)	736
BbvI	GCAGC	5 cut(s)	262, 392, 511, 1016, 1254
BccI	CCATC	2 cut(s)	1192, 1550
BceAI	ACGGC	1 cut(s)	735
BciT130I	CCWGG	1 cut(s)	540
BciVI	GTATCC	3 cut(s)	975, 1025, 1297
BclI	TGATCA	1 cut(s)	1452
BcoDI	GTCTC	2 cut(s)	699, 876
BfaI	CTAG	3 cut(s)	287, 770, 1280
BfmI	CTRYAG	3 cut(s)	364, 664, 1002
BfuI	GTATCC	3 cut(s)	975, 1025, 1297
BisI	GCNGC	6 cut(s)	276, 333, 406, 525, 1005, 1243
BlsI	GCNGC	6 cut(s)	277, 334, 407, 526, 1006, 1244
Bme1390I	CCNGG	1 cut(s)	540
BmgBI	CACGTC	1 cut(s)	1277
BmiI	GGNNCC	3 cut(s)	142, 1166, 1377
BmrFI	CCNGG	1 cut(s)	540
BmrI	ACTGGG	1 cut(s)	1060
BmsI	GCATC	8 cut(s)	350, 417, 568, 601, 764, 914, 1361, 1425
BmuI	ACTGGG	1 cut(s)	1060
BplI	GAGNNNNNCTC	4 cut(s)	294, 326, 645, 677
BpmI	CTGGAG	1 cut(s)	672
Bsa29I	ATCGAT	1 cut(s)	375
BsaBI	GATNNNNATC	1 cut(s)	377
BsaJI	CCNNGG	3 cut(s)	24, 539, 1160
BsaXI	ACNNNNNCTCC	2 cut(s)	877, 907
Bsc4I	CCNNNNNNNGG	3 cut(s)	356, 621, 1499
Bse1I	ACTGG	2 cut(s)	737, 1055
Bse3DI	GCAATG	2 cut(s)	304, 900
Bse8I	GATNNNNATC	1 cut(s)	377
BseBI	CCWGG	1 cut(s)	540
BseCI	ATCGAT	1 cut(s)	375
BseDI	CCNNGG	3 cut(s)	24, 539, 1160
BseGI	GGATG	4 cut(s)	365, 616, 1203, 1229
BseJI	GATNNNNATC	1 cut(s)	377
BseLI	CCNNNNNNNGG	3 cut(s)	356, 621, 1499
BseMI	GCAATG	2 cut(s)	304, 900
BseMII	CTCAG	5 cut(s)	70, 456, 1176, 1329, 1335
BseNI	ACTGG	2 cut(s)	737, 1055
BseRI	GAGGAG	3 cut(s)	306, 1121, 1149
BseSI	GKGCMC	1 cut(s)	736
BseXI	GCAGC	5 cut(s)	262, 392, 511, 1016, 1254
BseYI	CCCAGC	1 cut(s)	548
BsgI	GTGCAG	1 cut(s)	1341
BshFI	GGCC	1 cut(s)	1492
BshVI	ATCGAT	1 cut(s)	375
BsiHKAI	GWGCWC	1 cut(s)	736
BslFI	GGGAC	1 cut(s)	43
BslI	CCNNNNNNNGG	3 cut(s)	356, 621, 1499
BsmAI	GTCTC	2 cut(s)	699, 876
BsmFI	GGGAC	1 cut(s)	43
BsmI	GAATGC	2 cut(s)	1244, 1435
BsnI	GGCC	1 cut(s)	1492
Bsp1286I	GDGCHC	2 cut(s)	143, 736
Bsp1407I	TGTACA	1 cut(s)	1474
BspACI	CCGC	3 cut(s)	263, 333, 713
BspANI	GGCC	1 cut(s)	1492
BspCNI	CTCAG	5 cut(s)	69, 455, 1177, 1330, 1336
BspDI	ATCGAT	1 cut(s)	375
BspHI	TCATGA	1 cut(s)	1458
BspLI	GGNNCC	3 cut(s)	142, 1166, 1377
BspMAI	CTGCAG	1 cut(s)	1006
BspPI	GGATC	3 cut(s)	136, 994, 1127
BsrDI	GCAATG	2 cut(s)	304, 900
BsrGI	TGTACA	1 cut(s)	1474
BsrI	ACTGG	2 cut(s)	737, 1055
BssECI	CCNNGG	3 cut(s)	24, 539, 1160
BssT1I	CCWWGG	1 cut(s)	24
Bst2UI	CCWGG	1 cut(s)	540
Bst4CI	ACNGT	8 cut(s)	176, 226, 395, 435, 870, 963, 1528, 1564
Bst6I	CTCTTC	1 cut(s)	317
BstAUI	TGTACA	1 cut(s)	1474
BstDEI	CTNAG	6 cut(s)	56, 442, 1185, 1338, 1344, 1434
BstF5I	GGATG	4 cut(s)	365, 616, 1203, 1229
BstMAI	GTCTC	2 cut(s)	699, 876
BstMWI	GCNNNNNNNGC	2 cut(s)	341, 1094
BstNI	CCWGG	1 cut(s)	540
BstSCI	CCNGG	1 cut(s)	538
BstSFI	CTRYAG	3 cut(s)	364, 664, 1002
BstSLI	GKGCMC	1 cut(s)	736
BstV1I	GCAGC	5 cut(s)	262, 392, 511, 1016, 1254
BstX2I	RGATCY	1 cut(s)	986
BstYI	RGATCY	1 cut(s)	986
Bsu15I	ATCGAT	1 cut(s)	375
BsuI	GTATCC	3 cut(s)	975, 1025, 1297
BsuRI	GGCC	1 cut(s)	1492
BsuTUI	ATCGAT	1 cut(s)	375
BtgZI	GCGATG	1 cut(s)	1485
BtrI	CACGTC	1 cut(s)	1277
BtsCI	GGATG	4 cut(s)	365, 616, 1203, 1229
BtsIMutI	CAGTG	1 cut(s)	1524
CaiI	CAGNNNCTG	1 cut(s)	581
CciI	TCATGA	1 cut(s)	1458
ClaI	ATCGAT	1 cut(s)	375
CseI	GACGC	1 cut(s)	1234
Csp6I	GTAC	2 cut(s)	1475, 1560
CviAII	CATG	5 cut(s)	238, 679, 698, 1220, 1459
CviQI	GTAC	2 cut(s)	1475, 1560
DdeI	CTNAG	6 cut(s)	56, 442, 1185, 1338, 1344, 1434
Eam1104I	CTCTTC	1 cut(s)	317
EarI	CTCTTC	1 cut(s)	317
Eco130I	CCWWGG	1 cut(s)	24
Eco24I	GRGCYC	1 cut(s)	143
Eco32I	GATATC	1 cut(s)	379
Eco57I	CTGAAG	3 cut(s)	183, 1011, 1283
EcoRI	GAATTC	1 cut(s)	1124
EcoRII	CCWGG	1 cut(s)	538
EcoRV	GATATC	1 cut(s)	379
EcoT14I	CCWWGG	1 cut(s)	24
EcoT22I	ATGCAT	1 cut(s)	1418
EcoT38I	GRGCYC	1 cut(s)	143
ErhI	CCWWGG	1 cut(s)	24
FaeI	CATG	5 cut(s)	241, 682, 701, 1223, 1462
FaqI	GGGAC	1 cut(s)	43
FatI	CATG	5 cut(s)	237, 678, 697, 1219, 1458
FauI	CCCGC	1 cut(s)	270
FbaI	TGATCA	1 cut(s)	1452
FblI	GTMKAC	2 cut(s)	258, 828
Fnu4HI	GCNGC	6 cut(s)	276, 333, 406, 525, 1005, 1243
FokI	GGATG	4 cut(s)	372, 623, 1210, 1236
FriOI	GRGCYC	1 cut(s)	143
Fsp4HI	GCNGC	6 cut(s)	276, 333, 406, 525, 1005, 1243
FspBI	CTAG	3 cut(s)	287, 770, 1280
GluI	GCNGC	6 cut(s)	276, 333, 406, 525, 1005, 1243
GsaI	CCCAGC	1 cut(s)	552
GsuI	CTGGAG	1 cut(s)	672
HaeIII	GGCC	1 cut(s)	1492
HgaI	GACGC	1 cut(s)	1234
Hin1II	CATG	5 cut(s)	241, 682, 701, 1223, 1462
HincII	GTYRAC	1 cut(s)	829
HindII	GTYRAC	1 cut(s)	829
HindIII	AAGCTT	1 cut(s)	936
HinfI	GANTC	8 cut(s)	5, 157, 825, 890, 1205, 1340, 1503, 1521
HphI	GGTGA	2 cut(s)	101, 1277
Hpy166II	GTNNAC	6 cut(s)	119, 184, 259, 734, 829, 1268
Hpy188I	TCNGA	9 cut(s)	133, 202, 587, 811, 969, 991, 1043, 1197, 1345
Hpy8I	GTNNAC	6 cut(s)	119, 184, 259, 734, 829, 1268
HpyAV	CCTTC	3 cut(s)	959, 1361, 1493
HpyCH4III	ACNGT	8 cut(s)	176, 226, 395, 435, 870, 963, 1528, 1564
HpyCH4IV	ACGT	4 cut(s)	121, 1252, 1276, 1449
HpyF10VI	GCNNNNNNNGC	2 cut(s)	341, 1094
HpyF3I	CTNAG	6 cut(s)	56, 442, 1185, 1338, 1344, 1434
HpySE526I	ACGT	4 cut(s)	121, 1252, 1276, 1449
Hsp92II	CATG	5 cut(s)	241, 682, 701, 1223, 1462
Ksp22I	TGATCA	1 cut(s)	1452
LmnI	GCTCC	3 cut(s)	146, 302, 1108
Lsp1109I	GCAGC	5 cut(s)	262, 392, 511, 1016, 1254
LweI	GCATC	8 cut(s)	350, 417, 568, 601, 764, 914, 1361, 1425
MaeI	CTAG	3 cut(s)	287, 770, 1280
MaeII	ACGT	4 cut(s)	121, 1252, 1276, 1449
MaeIII	GTNAC	1 cut(s)	389
MboII	GAAGA	4 cut(s)	106, 261, 304, 565
MfeI	CAATTG	1 cut(s)	1380
MflI	RGATCY	1 cut(s)	986
MhlI	GDGCHC	2 cut(s)	143, 736
MluCI	AATT	6 cut(s)	590, 760, 1090, 1124, 1380, 1548
MlyI	GAGTC	2 cut(s)	834, 1349
MmeI	TCCRAC	2 cut(s)	1175, 1273
Mph1103I	ATGCAT	1 cut(s)	1418
MroXI	GAANNNNTTC	1 cut(s)	996
MseI	TTAA	2 cut(s)	399, 453
MslI	CAYNNNNRTG	2 cut(s)	857, 1222
MspA1I	CMGCKG	2 cut(s)	344, 405
MspR9I	CCNGG	1 cut(s)	540
MunI	CAATTG	1 cut(s)	1380
Mva1269I	GAATGC	2 cut(s)	1244, 1435
MvaI	CCWGG	1 cut(s)	540
MwoI	GCNNNNNNNGC	2 cut(s)	341, 1094
NlaIII	CATG	5 cut(s)	241, 682, 701, 1223, 1462
NlaIV	GGNNCC	3 cut(s)	142, 1166, 1377
NsiI	ATGCAT	1 cut(s)	1418
PagI	TCATGA	1 cut(s)	1458
PcsI	WCGNNNNNNNCGW	2 cut(s)	790, 1446
PctI	GAATGC	2 cut(s)	1244, 1435
PdmI	GAANNNNTTC	1 cut(s)	996
PfeI	GAWTC	6 cut(s)	5, 157, 890, 1205, 1503, 1521
PkrI	GCNGC	6 cut(s)	277, 334, 407, 526, 1006, 1244
PleI	GAGTC	2 cut(s)	833, 1348
PpsI	GAGTC	2 cut(s)	833, 1348
Psp1406I	AACGTT	2 cut(s)	121, 1252
Psp6I	CCWGG	1 cut(s)	538
PspFI	CCCAGC	1 cut(s)	548
PspGI	CCWGG	1 cut(s)	538
PspN4I	GGNNCC	3 cut(s)	142, 1166, 1377
PstI	CTGCAG	1 cut(s)	1006
PstNI	CAGNNNCTG	1 cut(s)	581
PsuI	RGATCY	1 cut(s)	986
PvuII	CAGCTG	2 cut(s)	344, 405
RsaI	GTAC	2 cut(s)	1476, 1561
RsaNI	GTAC	2 cut(s)	1475, 1560
RseI	CAYNNNNRTG	2 cut(s)	857, 1222
SalI	GTCGAC	1 cut(s)	827
SaqAI	TTAA	2 cut(s)	399, 453
SatI	GCNGC	6 cut(s)	276, 333, 406, 525, 1005, 1243
SchI	GAGTC	2 cut(s)	834, 1349
ScrFI	CCNGG	1 cut(s)	540
SduI	GDGCHC	2 cut(s)	143, 736
SfaNI	GCATC	8 cut(s)	350, 417, 568, 601, 764, 914, 1361, 1425
SfcI	CTRYAG	3 cut(s)	364, 664, 1002
SmiMI	CAYNNNNRTG	2 cut(s)	857, 1222
Sse9I	AATT	6 cut(s)	590, 760, 1090, 1124, 1380, 1548
SsiI	CCGC	3 cut(s)	263, 333, 713
SspMI	CTAG	3 cut(s)	287, 770, 1280
StyD4I	CCNGG	1 cut(s)	538
StyI	CCWWGG	1 cut(s)	24
TaaI	ACNGT	8 cut(s)	176, 226, 395, 435, 870, 963, 1528, 1564
TaiI	ACGT	4 cut(s)	124, 1255, 1279, 1452
TaqI	TCGA	6 cut(s)	375, 457, 784, 828, 1513, 1536
TasI	AATT	6 cut(s)	590, 760, 1090, 1124, 1380, 1548
TatI	WGTACW	1 cut(s)	1474
TauI	GCSGC	1 cut(s)	335
TfiI	GAWTC	6 cut(s)	5, 157, 890, 1205, 1503, 1521
Tru1I	TTAA	2 cut(s)	399, 453
Tru9I	TTAA	2 cut(s)	399, 453
TscAI	CASTG	1 cut(s)	1531
TseI	GCWGC	5 cut(s)	275, 405, 524, 1004, 1242
TspDTI	ATGAA	2 cut(s)	686, 1475
TspGWI	ACGGA	1 cut(s)	1134
TspRI	CASTG	1 cut(s)	1531
VneI	GTGCAC	1 cut(s)	732
XapI	RAATTY	3 cut(s)	590, 760, 1124
XbaI	TCTAGA	1 cut(s)	1279
XmiI	GTMKAC	2 cut(s)	258, 828
XmnI	GAANNNNTTC	1 cut(s)	996
XspI	CTAG	3 cut(s)	287, 770, 1280
Zsp2I	ATGCAT	1 cut(s)	1418

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.