Rw6G011900

This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor, ADP- glucose from Glc-1-P and ATP

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
Physical Location & Seq
Forward (+)
21389845 .. 21395484
5640 bp
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UTR
Exon/CDS
Intron
Rw6G011900.1

Sequence Viewer

Length: 1608 bp
ATGAATCCCACCGACAACTTTGAAATGGATTCTTTGTGTGTGACCTTGAAACCAAGCACCCATTTGAGAAAACCAACTCAGGGTGGTCTTTGTAATGGGGCTAATGGGTTTTTGGGTGAGAGGATGAGAGAGAGTTTTAGTAACAGGGTTTGGGAAAATCGGGTGTCCAAGGCTTTGAGAACTGAGAAGAGTGTCAACAAGGCAAGACCTGGTGTTGTTCGTTCTGTTCTTACATCGAAGGACCTTGAGGAGGCTATGACCCTGAAAGTCCAGACTTACCACAGACGAAGAGTAGACCCCAAGAATGTTGCTTCGATCATATTAGGAGGAGGGGCAGGGACTCAACTTTTTCCTCTTACCAGCAGAGCAGCAACACCCGCAGTTCCGGTTGGTGGATGCTACAGGCTTATAGACATTCCGATGAGCAATTGCATCAACAGCAACATAAATAAAATTTTCGTGCTAACCCAGTTTAATTCCACTTCTCTCAATCGACACCTTGCTCGCACCTATTTTGGACATGGTATCAACTTCGGGGATGGATTTGTGGAGGTTCTGGCAGCCACTCAGACACCTGGGGAAGCAGGAATGAATTGGTTCCAAGGAACAGCAGATGCTGTGAGGCAATTTGTATGGGTATTTGAGGATGCTAAGAATAGCAATGTTGAAAATATACTGATTTTGTCTGGTGATCATCTTTATCGAATGGACTATATGGACTTTGTGCAGAGTCATGTTGATAGCAATGCAGATATCACACTTTCATGTGCAGCTGTGGGTGACAGCCGTGCATCTGATTATGGATTGGTGAAGATAGACAGCAGAGGTAGAATCATCCAGTTTGCTGAAAAACCAAGGGGAGCTAATCTAAGAGCAATGCAAGCAGATACAACACTTCTTGGACTCTCTCCACAAGATGCTCTAAAATCCCCATATGTTGCATCGATGGGAGTGTATGTATTTAAGACGGAAATTTTACTAGAGCTTCTGAAAACGAGATATCCAACATCGAACGACTTTGGATCTGAAATAATTCCTGCAGCAGTGAAAGAGCGCAATGTCCAAGCATATATATTCAGAGACTACTGGGAGGACATTGGACGTATAAAGTCTTTTTATGATGCTAACTTGGCCCTCACTGAAGAGTTTCCGAAGTTTCAGTTTTATGACCCAAAGACACCTTTCTTCACCTCTCCTCGGTTCTTACCACCAACCAAGATTGACAAGTGCCGGGTTGTGGATGCAATAATCTCACATGGATGTTTCTTGCAAGAATGTCTTGTCCAACGTTCAATAGTGGGTGAACGCTCACGGTTAAATTATGGTGTTGAGCTCAAGGATACCATAATGATGGGTGCAGACAGTTACCAAACTGAACCTGAGATTGCAGCTTTGCTTGCACGTGGGAAGGTCCCAATTGGTATTGGAAGGAATACAAAGATCAGGAAGTGTGTAATCGACAAGAATGCAAAGATTGGAAAGGACGTGATGATAATGAACAAAGATGGCGTTCAAGAAGCAGACAGGCCAGAAGAGGGGTTCTACATCCGTGAGGGAATTGTTATTGTTGTGGAGAAGGCAACAATAGAAGATGGAAAAGTTATATAA

Protein Analysis

535

Amino Acids

59.62

Weight (kDa)

8.56

Isoelectric Point (pI)

34.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NTP_transferase PF00483 105 - 381 4.1e-70 Nucleotidyl transferase
LbH_GLGC PF25247 400 - 534 9.4e-50 GLGC left-handed parallel beta-helix domain
Hexapep_GlmU PF24894 404 - 523 4.5e-06 GlmU-like, C-terminal hexapeptide
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 294
AciI CCGC 1 cut(s) 378
AclI AACGTT 1 cut(s) 1288
AclWI GGATC 1 cut(s) 1030
AcsI RAATTY 2 cut(s) 453, 972
AcuI CTGAAG 1 cut(s) 1161
AcvI CACGTG 1 cut(s) 1403
AfiI CCNNNNNNNGG 6 cut(s) 80, 250, 392, 1197, 1237, 1535
AgsI TTSAA 5 cut(s) 23, 49, 668, 1293, 1514
AjiI CACGTC 1 cut(s) 1486
AjnI CCWGG 2 cut(s) 208, 574
AluBI AGCT 5 cut(s) 773, 863, 985, 1333, 1391
AluI AGCT 5 cut(s) 773, 863, 985, 1333, 1391
Alw21I GWGCWC 1 cut(s) 1335
Alw26I GTCTC 1 cut(s) 1074
AlwI GGATC 1 cut(s) 1030
AlwNI CAGNNNCTG 1 cut(s) 617
AoxI GGCC 2 cut(s) 1131, 1526
ApeKI GCWGC 5 cut(s) 368, 560, 770, 1040, 1388
ApoI RAATTY 2 cut(s) 453, 972
Asp700I GAANNNNTTC 3 cut(s) 596, 1032, 1146
AspLEI GCGC 1 cut(s) 1056
AspS9I GGNCC 3 cut(s) 241, 1132, 1411
AsuC2I CCSGG 1 cut(s) 1232
AsuHPI GGTGA 6 cut(s) 128, 701, 791, 820, 1180, 1313
AvaII GGWCC 2 cut(s) 241, 1411
BanII GRGCYC 1 cut(s) 1335
BbrPI CACGTG 1 cut(s) 1403
Bbv12I GWGCWC 1 cut(s) 1335
BbvI GCAGC 5 cut(s) 380, 572, 782, 1052, 1400
BccI CCATC 5 cut(s) 533, 940, 1345, 1499, 1586
BceAI ACGGC 1 cut(s) 771
BcgI CGANNNNNNTGC 2 cut(s) 1448, 1482
BciT130I CCWGG 2 cut(s) 210, 576
BciVI GTATCC 1 cut(s) 1333
BclI TGATCA 1 cut(s) 691
BcnI CCSGG 1 cut(s) 1232
BcoDI GTCTC 1 cut(s) 1074
BfaI CTAG 1 cut(s) 980
BfmI CTRYAG 2 cut(s) 400, 1038
BfuI GTATCC 1 cut(s) 1333
BisI GCNGC 5 cut(s) 369, 561, 771, 1041, 1389
BlsI GCNGC 5 cut(s) 370, 562, 772, 1042, 1390
Bme1390I CCNGG 3 cut(s) 210, 576, 1232
Bme18I GGWCC 2 cut(s) 241, 1411
BmgBI CACGTC 1 cut(s) 1486
BmgT120I GGNCC 3 cut(s) 241, 1132, 1411
BmiI GGNNCC 2 cut(s) 599, 1413
BmrFI CCNGG 3 cut(s) 210, 576, 1232
BmrI ACTGGG 2 cut(s) 463, 1096
BmsI GCATC 9 cut(s) 386, 441, 604, 637, 800, 907, 950, 1111, 1231
BmuI ACTGGG 2 cut(s) 463, 1096
BpuEI CTTGAG 2 cut(s) 266, 1319
BpuMI CCSGG 1 cut(s) 1232
Bsa29I ATCGAT 1 cut(s) 944
BsaAI YACGTR 1 cut(s) 1403
BsaJI CCNNGG 5 cut(s) 168, 575, 601, 854, 1196
BsaWI WCCGGW 1 cut(s) 385
BsaXI ACNNNNNCTCC 2 cut(s) 942, 972
Bsc4I CCNNNNNNNGG 6 cut(s) 80, 250, 392, 1197, 1237, 1535
Bse1I ACTGG 3 cut(s) 469, 838, 1091
Bse3DI GCAATG 4 cut(s) 667, 751, 882, 1063
BseBI CCWGG 2 cut(s) 210, 576
BseCI ATCGAT 1 cut(s) 944
BseDI CCNNGG 5 cut(s) 168, 575, 601, 854, 1196
BseGI GGATG 8 cut(s) 129, 401, 544, 652, 834, 1246, 1265, 1545
BseLI CCNNNNNNNGG 6 cut(s) 80, 250, 392, 1197, 1237, 1535
BseMI GCAATG 4 cut(s) 667, 751, 882, 1063
BseMII CTCAG 4 cut(s) 92, 174, 581, 1371
BseNI ACTGG 3 cut(s) 469, 838, 1091
BseRI GAGGAG 3 cut(s) 263, 342, 1185
BseXI GCAGC 5 cut(s) 380, 572, 782, 1052, 1400
BsgI GTGCAG 3 cut(s) 746, 789, 1377
BshFI GGCC 2 cut(s) 1133, 1528
BshVI ATCGAT 1 cut(s) 944
BsiHKAI GWGCWC 1 cut(s) 1335
BsiSI CCGG 2 cut(s) 386, 1231
BslFI GGGAC 2 cut(s) 352, 1397
BslI CCNNNNNNNGG 6 cut(s) 80, 250, 392, 1197, 1237, 1535
BsmAI GTCTC 1 cut(s) 1074
BsmFI GGGAC 2 cut(s) 352, 1397
BsmI GAATGC 1 cut(s) 1471
BsnI GGCC 2 cut(s) 1133, 1528
Bsp1286I GDGCHC 1 cut(s) 1335
Bsp143I GATC 4 cut(s) 315, 691, 1022, 1440
BspACI CCGC 1 cut(s) 378
BspANI GGCC 2 cut(s) 1133, 1528
BspCNI CTCAG 4 cut(s) 91, 175, 580, 1372
BspDI ATCGAT 1 cut(s) 944
BspLI GGNNCC 2 cut(s) 599, 1413
BspMAI CTGCAG 1 cut(s) 1042
BspPI GGATC 1 cut(s) 1030
BsrDI GCAATG 4 cut(s) 667, 751, 882, 1063
BsrI ACTGG 3 cut(s) 469, 838, 1091
BssECI CCNNGG 5 cut(s) 168, 575, 601, 854, 1196
BssMI GATC 4 cut(s) 315, 691, 1022, 1440
BssT1I CCWWGG 3 cut(s) 168, 601, 854
Bst2UI CCWGG 2 cut(s) 210, 576
Bst4CI ACNGT 2 cut(s) 1314, 1364
Bst6I CTCTTC 4 cut(s) 182, 283, 1137, 1527
BstBAI YACGTR 1 cut(s) 1403
BstC8I GCNNGC 3 cut(s) 505, 882, 1398
BstDEI CTNAG 6 cut(s) 78, 183, 567, 651, 869, 1380
BstENI CCTNNNNNAGG 1 cut(s) 248
BstF5I GGATG 8 cut(s) 129, 401, 544, 652, 834, 1246, 1265, 1545
BstHHI GCGC 1 cut(s) 1056
BstKTI GATC 4 cut(s) 318, 694, 1025, 1443
BstMAI GTCTC 1 cut(s) 1074
BstMBI GATC 4 cut(s) 315, 691, 1022, 1440
BstMWI GCNNNNNNNGC 5 cut(s) 377, 438, 881, 1130, 1397
BstNI CCWGG 2 cut(s) 210, 576
BstSCI CCNGG 3 cut(s) 208, 574, 1230
BstSFI CTRYAG 2 cut(s) 400, 1038
BstV1I GCAGC 5 cut(s) 380, 572, 782, 1052, 1400
BstX2I RGATCY 1 cut(s) 1022
BstXI CCANNNNNNTGG 1 cut(s) 1351
BstYI RGATCY 1 cut(s) 1022
Bsu15I ATCGAT 1 cut(s) 944
BsuI GTATCC 1 cut(s) 1333
BsuRI GGCC 2 cut(s) 1133, 1528
BsuTUI ATCGAT 1 cut(s) 944
BtrI CACGTC 1 cut(s) 1486
BtsCI GGATG 8 cut(s) 129, 401, 544, 652, 834, 1246, 1265, 1545
BtsI GCAGTG 1 cut(s) 1050
BtsIMutI CAGTG 2 cut(s) 1050, 1137
Cac8I GCNNGC 3 cut(s) 505, 882, 1398
CaiI CAGNNNCTG 1 cut(s) 617
CfoI GCGC 1 cut(s) 1056
Cfr13I GGNCC 3 cut(s) 241, 1132, 1411
ClaI ATCGAT 1 cut(s) 944
CsiI ACCWGGT 1 cut(s) 208
CviAII CATG 4 cut(s) 521, 734, 765, 1256
DdeI CTNAG 6 cut(s) 78, 183, 567, 651, 869, 1380
DpnI GATC 4 cut(s) 317, 693, 1024, 1442
DpnII GATC 4 cut(s) 315, 691, 1022, 1440
Eam1104I CTCTTC 4 cut(s) 182, 283, 1137, 1527
EarI CTCTTC 4 cut(s) 182, 283, 1137, 1527
Ecl136II GAGCTC 1 cut(s) 1333
Eco130I CCWWGG 3 cut(s) 168, 601, 854
Eco24I GRGCYC 1 cut(s) 1335
Eco32I GATATC 2 cut(s) 754, 1001
Eco47I GGWCC 2 cut(s) 241, 1411
Eco53kI GAGCTC 1 cut(s) 1333
Eco57I CTGAAG 1 cut(s) 1161
Eco72I CACGTG 1 cut(s) 1403
EcoICRI GAGCTC 1 cut(s) 1333
EcoNI CCTNNNNNAGG 1 cut(s) 248
EcoO109I RGGNCCY 2 cut(s) 241, 1411
EcoRII CCWGG 2 cut(s) 208, 574
EcoRV GATATC 2 cut(s) 754, 1001
EcoT14I CCWWGG 3 cut(s) 168, 601, 854
EcoT38I GRGCYC 1 cut(s) 1335
ErhI CCWWGG 3 cut(s) 168, 601, 854
FaeI CATG 4 cut(s) 524, 737, 768, 1259
FalI AAGNNNNNCTT 2 cut(s) 1263, 1295
FaqI GGGAC 2 cut(s) 352, 1397
FatI CATG 4 cut(s) 520, 733, 764, 1255
FauI CCCGC 1 cut(s) 385
FauNDI CATATG 1 cut(s) 934
FbaI TGATCA 1 cut(s) 691
FblI GTMKAC 1 cut(s) 294
Fnu4HI GCNGC 5 cut(s) 369, 561, 771, 1041, 1389
FokI GGATG 8 cut(s) 136, 408, 551, 659, 821, 1253, 1272, 1532
FriOI GRGCYC 1 cut(s) 1335
Fsp4HI GCNGC 5 cut(s) 369, 561, 771, 1041, 1389
FspBI CTAG 1 cut(s) 980
GlaI GCGC 1 cut(s) 1055
GluI GCNGC 5 cut(s) 369, 561, 771, 1041, 1389
HaeIII GGCC 2 cut(s) 1133, 1528
HapII CCGG 2 cut(s) 386, 1231
HhaI GCGC 1 cut(s) 1056
Hin1II CATG 4 cut(s) 524, 737, 768, 1259
Hin6I GCGC 1 cut(s) 1054
HinP1I GCGC 1 cut(s) 1054
HincII GTYRAC 1 cut(s) 196
HindII GTYRAC 1 cut(s) 196
HinfI GANTC 6 cut(s) 4, 29, 340, 730, 831, 903
HpaII CCGG 2 cut(s) 386, 1231
HphI GGTGA 6 cut(s) 128, 701, 791, 820, 1180, 1313
Hpy166II GTNNAC 3 cut(s) 196, 295, 1304
Hpy188I TCNGA 7 cut(s) 420, 570, 796, 990, 1027, 1079, 1152
Hpy188III TCNNGA 3 cut(s) 271, 1444, 1514
Hpy8I GTNNAC 3 cut(s) 196, 295, 1304
HpyAV CCTTC 4 cut(s) 232, 1402, 1422, 1570
HpyCH4III ACNGT 2 cut(s) 1314, 1364
HpyCH4IV ACGT 4 cut(s) 1102, 1288, 1402, 1485
HpyF10VI GCNNNNNNNGC 5 cut(s) 377, 438, 881, 1130, 1397
HpyF3I CTNAG 6 cut(s) 78, 183, 567, 651, 869, 1380
HpySE526I ACGT 4 cut(s) 1102, 1288, 1402, 1485
Hsp92II CATG 4 cut(s) 524, 737, 768, 1259
HspAI GCGC 1 cut(s) 1054
Ksp22I TGATCA 1 cut(s) 691
Kzo9I GATC 4 cut(s) 315, 691, 1022, 1440
LmnI GCTCC 1 cut(s) 860
Lsp1109I GCAGC 5 cut(s) 380, 572, 782, 1052, 1400
LweI GCATC 9 cut(s) 386, 441, 604, 637, 800, 907, 950, 1111, 1231
MabI ACCWGGT 1 cut(s) 208
MaeI CTAG 1 cut(s) 980
MaeII ACGT 4 cut(s) 1102, 1288, 1402, 1485
MaeIII GTNAC 4 cut(s) 40, 140, 779, 1364
MalI GATC 4 cut(s) 317, 693, 1024, 1442
MboI GATC 4 cut(s) 315, 691, 1022, 1440
MboII GAAGA 7 cut(s) 199, 300, 823, 1154, 1177, 1544, 1601
MfeI CAATTG 2 cut(s) 427, 1416
MflI RGATCY 1 cut(s) 1022
MhlI GDGCHC 1 cut(s) 1335
MlyI GAGTC 3 cut(s) 334, 739, 897
MmeI TCCRAC 2 cut(s) 1028, 1309
MroXI GAANNNNTTC 3 cut(s) 596, 1032, 1146
MseI TTAA 3 cut(s) 474, 963, 1316
MslI CAYNNNNRTG 4 cut(s) 419, 763, 1258, 1349
MspA1I CMGCKG 1 cut(s) 773
MspI CCGG 2 cut(s) 386, 1231
MspR9I CCNGG 3 cut(s) 210, 576, 1232
MunI CAATTG 2 cut(s) 427, 1416
Mva1269I GAATGC 1 cut(s) 1471
MvaI CCWGG 2 cut(s) 210, 576
MwoI GCNNNNNNNGC 5 cut(s) 377, 438, 881, 1130, 1397
NciI CCSGG 1 cut(s) 1232
NdeI CATATG 1 cut(s) 934
NdeII GATC 4 cut(s) 315, 691, 1022, 1440
NlaIII CATG 4 cut(s) 524, 737, 768, 1259
NlaIV GGNNCC 2 cut(s) 599, 1413
NmuCI GTSAC 2 cut(s) 40, 779
PctI GAATGC 1 cut(s) 1471
PdmI GAANNNNTTC 3 cut(s) 596, 1032, 1146
PfeI GAWTC 3 cut(s) 4, 29, 831
PkrI GCNGC 5 cut(s) 370, 562, 772, 1042, 1390
PleI GAGTC 3 cut(s) 334, 738, 897
PmaCI CACGTG 1 cut(s) 1403
PmlI CACGTG 1 cut(s) 1403
PpsI GAGTC 3 cut(s) 334, 738, 897
Ppu21I YACGTR 1 cut(s) 1403
PpuMI RGGWCCY 2 cut(s) 241, 1411
Psp124BI GAGCTC 1 cut(s) 1335
Psp1406I AACGTT 1 cut(s) 1288
Psp5II RGGWCCY 2 cut(s) 241, 1411
Psp6I CCWGG 2 cut(s) 208, 574
PspCI CACGTG 1 cut(s) 1403
PspGI CCWGG 2 cut(s) 208, 574
PspN4I GGNNCC 2 cut(s) 599, 1413
PspPI GGNCC 3 cut(s) 241, 1132, 1411
PspPPI RGGWCCY 2 cut(s) 241, 1411
PstI CTGCAG 1 cut(s) 1042
PstNI CAGNNNCTG 1 cut(s) 617
PsuI RGATCY 1 cut(s) 1022
PvuII CAGCTG 1 cut(s) 773
RseI CAYNNNNRTG 4 cut(s) 419, 763, 1258, 1349
SacI GAGCTC 1 cut(s) 1335
SaqAI TTAA 3 cut(s) 474, 963, 1316
SatI GCNGC 5 cut(s) 369, 561, 771, 1041, 1389
Sau3AI GATC 4 cut(s) 315, 691, 1022, 1440
Sau96I GGNCC 3 cut(s) 241, 1132, 1411
SchI GAGTC 3 cut(s) 334, 739, 897
ScrFI CCNGG 3 cut(s) 210, 576, 1232
SduI GDGCHC 1 cut(s) 1335
SexAI ACCWGGT 1 cut(s) 208
SfaNI GCATC 9 cut(s) 386, 441, 604, 637, 800, 907, 950, 1111, 1231
SfcI CTRYAG 2 cut(s) 400, 1038
SinI GGWCC 2 cut(s) 241, 1411
SmiMI CAYNNNNRTG 4 cut(s) 419, 763, 1258, 1349
SmlI CTYRAG 2 cut(s) 245, 1334
SmoI CTYRAG 2 cut(s) 245, 1334
SsiI CCGC 1 cut(s) 378
SspMI CTAG 1 cut(s) 980
SstI GAGCTC 1 cut(s) 1335
StyD4I CCNGG 3 cut(s) 208, 574, 1230
StyI CCWWGG 3 cut(s) 168, 601, 854
TaaI ACNGT 2 cut(s) 1314, 1364
TaiI ACGT 4 cut(s) 1105, 1291, 1405, 1488
TaqI TCGA 7 cut(s) 236, 314, 493, 703, 944, 1010, 1458
TfiI GAWTC 3 cut(s) 4, 29, 831
Tru1I TTAA 3 cut(s) 474, 963, 1316
Tru9I TTAA 3 cut(s) 474, 963, 1316
TscAI CASTG 2 cut(s) 1050, 1144
TseFI GTSAC 2 cut(s) 40, 779
TseI GCWGC 5 cut(s) 368, 560, 770, 1040, 1388
Tsp45I GTSAC 2 cut(s) 40, 779
TspDTI ATGAA 4 cut(s) 17, 605, 753, 1511
TspGWI ACGGA 2 cut(s) 983, 1538
TspRI CASTG 2 cut(s) 1050, 1144
VpaK11BI GGWCC 2 cut(s) 241, 1411
XagI CCTNNNNNAGG 1 cut(s) 248
XapI RAATTY 2 cut(s) 453, 972
XmiI GTMKAC 1 cut(s) 294
XmnI GAANNNNTTC 3 cut(s) 596, 1032, 1146
XspI CTAG 1 cut(s) 980
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.