MD10G1072000.v1.1

This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor, ADP- glucose from Glc-1-P and ATP

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
Physical Location & Seq
Reverse (-)
10034368 .. 10039745
5378 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1072000.v1.1.491

Sequence Viewer

Length: 1554 bp
ATGGATTCTTGCTGTGTGGCTTTGAAAAACACCCATTTGAGAAAACCAAGTGGTTTCTGCAATGGTGATTCTGGGTTTTTGGGGGAGAGGGTTAGAGGGAGTTTTAATAACAGGCTTTGGGCTAATCAGTTGAGAACTGGCAAGAGGAAGGTGAAACCTGGAGCTGTTCTTGCTGTTCTTACCTCAAAAGACACCGAGGCTGTCGCTCTGCAAATGCCATCGTTACCTAGGCGGAGGGTGGACCCAAAAAATGTAGCTTCGATTATATTAGGAGGAGGTGCAGGGACTCAGCTCTTTCCTCTTACCATAAGATCAGCGATACCCGCGGTCCCAGTTGGAGGATGCTACCGGCTTATAGACATTCCAATGAGCAACTGCATCAACAGCAATATAAATAAGATTTTCGTACTGACGCAGTTTAATTCTGCTTCTCTCAATCGCCACATTGCTCGCACCTATTTTGGAAACGGTATCAACTTTGGGGATGGATTTGTAGAGGTGCTGGCAGCCACTCAAACGCAAGGGGAAGCAGGAATGAATTGGTTCCAAGGAACAGCAGATGCTGTGAGGCAATTTATATGGGTTTTTGAGGATGCCAAGAACAGGAATGTTGAGAATGTAGTGATTTTGTCTGGCGATCATCTTTATCGAATGGATTATATGGACTTTGTGCAGAGTCATGTTGATAGAAATGCCGATATTACAATTTCGTGTGCAGCAGTGGGTGACAGTCGTGCGTCTGATTATGGATTGGTGAAGATAGACAGCAGAGGTAAAATCATCCAGTTTGCTGAAAAACCAAGGGGAGCTGATCTAAAAGCAATGCAAGCAGATACCAAGATTCTGGGATTGTCACCACAAGATGCCAGGAAAAGCCCCTATGTTGCATCAATGGGAGTTTATGTATTTAAGACAGAAGTTTTGCTAAATCTTCTGAGGTGGAGGTATCCGACATCCAATGACTTTGGATCTGAAATCATTCCTGCGGCAGTGAGAGACCACAATGTCCAGGCATATATGTTCAGAGACTACTGGGAGGACATTGGAACTATAAAGTCTTTCTATGATGCTAACTTGGCCCTTACCGAAGAGATTCCGAAATTTGAGTTTTATGATCCAAAGACACCAATCTTCACCTCTCCTGGATTCTTACCACCAACAAAGATTGATAACTGCCGGATTGCAGATGCAATAATCTCACATGGATGTTTCTTGCAAGATTGTAGTGTCCAGCATTCAATTGTGGGTGAACGTTCACGATTGAATTATGGTGTCGAAATCAAGGATTCCATAATGATGGGTGCCGACTATTACCAAACTGAATCTGAAATCGCATTGCTGCTTGTAGACGGGAAGGTCCCAATTGGTATTGGAAGCAATACAAAGATTTGGAATTGTATAATTGATAAGAATGCGAGTATAGGGAAGGACGTAATGATCGTGAACAAGGATGGTGTTCAAGAAGCAGATAGGCCAGAAGACGGATTTTACATTCGCGAGGGAATCACAGTTATTCTGGAGAAGGCAACAATACGAGACGGCATGGTTATATAA

Protein Analysis

518

Amino Acids

57.23

Weight (kDa)

7.03

Isoelectric Point (pI)

35.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NTP_transferase PF00483 87 - 363 1.2e-70 Nucleotidyl transferase
LbH_GLGC PF25247 383 - 516 5.9e-50 GLGC left-handed parallel beta-helix domain
Hexapep_GlmU PF24894 391 - 455 7.4e-06 GlmU-like, C-terminal hexapeptide
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 1004, 1355
AccB1I GGYRCC 1 cut(s) 1301
AccI GTMKAC 1 cut(s) 1347
AccII CGCG 2 cut(s) 326, 1497
AciI CCGC 4 cut(s) 232, 324, 326, 986
AclI AACGTT 1 cut(s) 1252
AclWI GGATC 2 cut(s) 976, 1109
AcsI RAATTY 1 cut(s) 1100
AfaI GTAC 1 cut(s) 408
AfiI CCNNNNNNNGG 3 cut(s) 338, 603, 1481
AgsI TTSAA 4 cut(s) 25, 1239, 1264, 1460
AjnI CCWGG 4 cut(s) 157, 866, 1008, 1141
AluBI AGCT 4 cut(s) 164, 257, 292, 809
AluI AGCT 4 cut(s) 164, 257, 292, 809
Alw26I GTCTC 3 cut(s) 990, 1020, 1530
AlwI GGATC 2 cut(s) 976, 1109
AlwNI CAGNNNCTG 1 cut(s) 563
AoxI GGCC 2 cut(s) 1077, 1472
ApeKI GCWGC 3 cut(s) 506, 716, 1339
ApoI RAATTY 1 cut(s) 1100
ArsI GACNNNNNNTTYG 2 cut(s) 904, 936
Asp700I GAANNNNTTC 3 cut(s) 542, 978, 1092
AspA2I CCTAGG 1 cut(s) 227
AspS9I GGNCC 4 cut(s) 241, 328, 1078, 1357
AsuHPI GGTGA 7 cut(s) 77, 163, 737, 766, 846, 1126, 1259
AvaII GGWCC 3 cut(s) 241, 328, 1357
AvrII CCTAGG 1 cut(s) 227
BanI GGYRCC 1 cut(s) 1301
BbsI GAAGAC 1 cut(s) 1485
BbvI GCAGC 3 cut(s) 518, 728, 1326
BccI CCATC 4 cut(s) 226, 479, 1291, 1445
BciT130I CCWGG 4 cut(s) 159, 868, 1010, 1143
BciVI GTATCC 1 cut(s) 957
BcoDI GTCTC 3 cut(s) 990, 1020, 1530
BfaI CTAG 1 cut(s) 228
BfuI GTATCC 1 cut(s) 957
BisI GCNGC 4 cut(s) 507, 717, 987, 1340
BlnI CCTAGG 1 cut(s) 227
BlsI GCNGC 4 cut(s) 508, 718, 988, 1341
Bme1390I CCNGG 4 cut(s) 159, 868, 1010, 1143
Bme18I GGWCC 3 cut(s) 241, 328, 1357
BmgT120I GGNCC 4 cut(s) 241, 328, 1078, 1357
BmiI GGNNCC 5 cut(s) 243, 330, 545, 1303, 1359
BmrFI CCNGG 4 cut(s) 159, 868, 1010, 1143
BmrI ACTGGG 2 cut(s) 326, 1042
BmsI GCATC 8 cut(s) 332, 387, 550, 583, 853, 896, 1057, 1177
BmuI ACTGGG 2 cut(s) 326, 1042
BpiI GAAGAC 1 cut(s) 1485
BpmI CTGGAG 2 cut(s) 180, 1538
BsaI GGTCTC 1 cut(s) 990
BsaJI CCNNGG 5 cut(s) 195, 227, 324, 547, 800
BsaXI ACNNNNNCTCC 2 cut(s) 888, 918
Bsc4I CCNNNNNNNGG 3 cut(s) 338, 603, 1481
Bse118I RCCGGY 1 cut(s) 348
Bse1I ACTGG 4 cut(s) 142, 332, 784, 1037
Bse3DI GCAATG 4 cut(s) 67, 444, 828, 1334
BseBI CCWGG 4 cut(s) 159, 868, 1010, 1143
BseDI CCNNGG 5 cut(s) 195, 227, 324, 547, 800
BseGI GGATG 7 cut(s) 347, 490, 598, 780, 953, 1211, 1456
BseLI CCNNNNNNNGG 3 cut(s) 338, 603, 1481
BseMI GCAATG 4 cut(s) 67, 444, 828, 1334
BseMII CTCAG 2 cut(s) 302, 926
BseNI ACTGG 4 cut(s) 142, 332, 784, 1037
BseRI GAGGAG 1 cut(s) 288
BseXI GCAGC 3 cut(s) 518, 728, 1326
BsgI GTGCAG 3 cut(s) 300, 692, 735
Bsh1236I CGCG 2 cut(s) 326, 1497
BshFI GGCC 2 cut(s) 1079, 1474
BshNI GGYRCC 1 cut(s) 1301
BsiSI CCGG 2 cut(s) 349, 1177
BslFI GGGAC 3 cut(s) 298, 314, 1343
BslI CCNNNNNNNGG 3 cut(s) 338, 603, 1481
BsmAI GTCTC 3 cut(s) 990, 1020, 1530
BsmBI CGTCTC 1 cut(s) 1530
BsmFI GGGAC 3 cut(s) 298, 314, 1343
BsmI GAATGC 2 cut(s) 1234, 1417
BsnI GGCC 2 cut(s) 1079, 1474
Bso31I GGTCTC 1 cut(s) 990
Bsp143I GATC 6 cut(s) 311, 637, 811, 968, 1114, 1437
Bsp68I TCGCGA 1 cut(s) 1497
BspACI CCGC 4 cut(s) 232, 324, 326, 986
BspANI GGCC 2 cut(s) 1079, 1474
BspCNI CTCAG 2 cut(s) 301, 927
BspFNI CGCG 2 cut(s) 326, 1497
BspLI GGNNCC 5 cut(s) 243, 330, 545, 1303, 1359
BspPI GGATC 2 cut(s) 976, 1109
BspT107I GGYRCC 1 cut(s) 1301
BspTNI GGTCTC 1 cut(s) 990
BsrDI GCAATG 4 cut(s) 67, 444, 828, 1334
BsrFI RCCGGY 1 cut(s) 348
BsrI ACTGG 4 cut(s) 142, 332, 784, 1037
BssAI RCCGGY 1 cut(s) 348
BssECI CCNNGG 5 cut(s) 195, 227, 324, 547, 800
BssMI GATC 6 cut(s) 311, 637, 811, 968, 1114, 1437
BssT1I CCWWGG 3 cut(s) 227, 547, 800
Bst2UI CCWGG 4 cut(s) 159, 868, 1010, 1143
Bst4CI ACNGT 3 cut(s) 470, 731, 1510
Bst6I CTCTTC 1 cut(s) 1083
BstC8I GCNNGC 3 cut(s) 451, 504, 828
BstDEI CTNAG 2 cut(s) 288, 935
BstDSI CCRYGG 1 cut(s) 324
BstF5I GGATG 7 cut(s) 347, 490, 598, 780, 953, 1211, 1456
BstFNI CGCG 2 cut(s) 326, 1497
BstKTI GATC 6 cut(s) 314, 640, 814, 971, 1117, 1440
BstMAI GTCTC 3 cut(s) 990, 1020, 1530
BstMBI GATC 6 cut(s) 311, 637, 811, 968, 1114, 1437
BstMWI GCNNNNNNNGC 5 cut(s) 170, 323, 384, 827, 1076
BstNI CCWGG 4 cut(s) 159, 868, 1010, 1143
BstSCI CCNGG 4 cut(s) 157, 866, 1008, 1141
BstUI CGCG 2 cut(s) 326, 1497
BstV1I GCAGC 3 cut(s) 518, 728, 1326
BstV2I GAAGAC 1 cut(s) 1485
BstX2I RGATCY 1 cut(s) 968
BstXI CCANNNNNNTGG 2 cut(s) 844, 1297
BstYI RGATCY 1 cut(s) 968
BsuI GTATCC 1 cut(s) 957
BsuRI GGCC 2 cut(s) 1079, 1474
BtgI CCRYGG 1 cut(s) 324
BtsCI GGATG 7 cut(s) 347, 490, 598, 780, 953, 1211, 1456
BtsI GCAGTG 2 cut(s) 726, 996
BtsIMutI CAGTG 2 cut(s) 726, 996
BtuMI TCGCGA 1 cut(s) 1497
Cac8I GCNNGC 3 cut(s) 451, 504, 828
CaiI CAGNNNCTG 1 cut(s) 563
Cfr10I RCCGGY 1 cut(s) 348
Cfr13I GGNCC 4 cut(s) 241, 328, 1078, 1357
Cfr42I CCGCGG 1 cut(s) 327
CseI GACGC 2 cut(s) 421, 726
Csp6I GTAC 1 cut(s) 407
CviAII CATG 3 cut(s) 680, 1202, 1543
CviQI GTAC 1 cut(s) 407
DdeI CTNAG 2 cut(s) 288, 935
DpnI GATC 6 cut(s) 313, 639, 813, 970, 1116, 1439
DpnII GATC 6 cut(s) 311, 637, 811, 968, 1114, 1437
DrdI GACNNNNNNGTC 2 cut(s) 1004, 1355
DseDI GACNNNNNNGTC 2 cut(s) 1004, 1355
Eam1104I CTCTTC 1 cut(s) 1083
EarI CTCTTC 1 cut(s) 1083
EciI GGCGGA 1 cut(s) 247
Eco130I CCWWGG 3 cut(s) 227, 547, 800
Eco31I GGTCTC 1 cut(s) 990
Eco47I GGWCC 3 cut(s) 241, 328, 1357
EcoO109I RGGNCCY 1 cut(s) 1357
EcoRII CCWGG 4 cut(s) 157, 866, 1008, 1141
EcoT14I CCWWGG 3 cut(s) 227, 547, 800
ErhI CCWWGG 3 cut(s) 227, 547, 800
Esp3I CGTCTC 1 cut(s) 1530
FaeI CATG 3 cut(s) 683, 1205, 1546
FaqI GGGAC 3 cut(s) 298, 314, 1343
FatI CATG 3 cut(s) 679, 1201, 1542
FauI CCCGC 1 cut(s) 331
FblI GTMKAC 1 cut(s) 1347
Fnu4HI GCNGC 4 cut(s) 507, 717, 987, 1340
FokI GGATG 7 cut(s) 354, 497, 605, 767, 940, 1218, 1463
Fsp4HI GCNGC 4 cut(s) 507, 717, 987, 1340
FspBI CTAG 1 cut(s) 228
GluI GCNGC 4 cut(s) 507, 717, 987, 1340
GsuI CTGGAG 2 cut(s) 180, 1538
HaeIII GGCC 2 cut(s) 1079, 1474
HapII CCGG 2 cut(s) 349, 1177
HgaI GACGC 2 cut(s) 421, 726
Hin1II CATG 3 cut(s) 683, 1205, 1546
HpaII CCGG 2 cut(s) 349, 1177
HphI GGTGA 7 cut(s) 77, 163, 737, 766, 846, 1126, 1259
Hpy166II GTNNAC 5 cut(s) 241, 1250, 1256, 1348, 1444
Hpy188I TCNGA 7 cut(s) 742, 936, 951, 973, 1025, 1098, 1327
Hpy188III TCNNGA 5 cut(s) 1257, 1441, 1460, 1496, 1517
Hpy8I GTNNAC 5 cut(s) 241, 1250, 1256, 1348, 1444
HpyAV CCTTC 4 cut(s) 142, 1348, 1420, 1516
HpyCH4III ACNGT 3 cut(s) 470, 731, 1510
HpyCH4IV ACGT 2 cut(s) 1252, 1431
HpyF10VI GCNNNNNNNGC 5 cut(s) 170, 323, 384, 827, 1076
HpyF3I CTNAG 2 cut(s) 288, 935
HpySE526I ACGT 2 cut(s) 1252, 1431
Hsp92II CATG 3 cut(s) 683, 1205, 1546
KspI CCGCGG 1 cut(s) 327
Kzo9I GATC 6 cut(s) 311, 637, 811, 968, 1114, 1437
LmnI GCTCC 2 cut(s) 161, 806
Lsp1109I GCAGC 3 cut(s) 518, 728, 1326
LweI GCATC 8 cut(s) 332, 387, 550, 583, 853, 896, 1057, 1177
MaeI CTAG 1 cut(s) 228
MaeII ACGT 2 cut(s) 1252, 1431
MaeIII GTNAC 3 cut(s) 222, 725, 852
MalI GATC 6 cut(s) 313, 639, 813, 970, 1116, 1439
MboI GATC 6 cut(s) 311, 637, 811, 968, 1114, 1437
MboII GAAGA 5 cut(s) 769, 923, 1100, 1123, 1490
MfeI CAATTG 2 cut(s) 1239, 1362
MflI RGATCY 1 cut(s) 968
MlyI GAGTC 2 cut(s) 280, 685
MmeI TCCRAC 2 cut(s) 316, 974
MroXI GAANNNNTTC 3 cut(s) 542, 978, 1092
MseI TTAA 3 cut(s) 105, 420, 909
MslI CAYNNNNRTG 3 cut(s) 365, 1204, 1295
MspA1I CMGCKG 1 cut(s) 326
MspI CCGG 2 cut(s) 349, 1177
MspR9I CCNGG 4 cut(s) 159, 868, 1010, 1143
MunI CAATTG 2 cut(s) 1239, 1362
Mva1269I GAATGC 2 cut(s) 1234, 1417
MvaI CCWGG 4 cut(s) 159, 868, 1010, 1143
MvnI CGCG 2 cut(s) 326, 1497
MwoI GCNNNNNNNGC 5 cut(s) 170, 323, 384, 827, 1076
NdeII GATC 6 cut(s) 311, 637, 811, 968, 1114, 1437
NlaIII CATG 3 cut(s) 683, 1205, 1546
NlaIV GGNNCC 5 cut(s) 243, 330, 545, 1303, 1359
NmuCI GTSAC 2 cut(s) 725, 852
NruI TCGCGA 1 cut(s) 1497
PcsI WCGNNNNNNNCGW 1 cut(s) 1437
PctI GAATGC 2 cut(s) 1234, 1417
PdmI GAANNNNTTC 3 cut(s) 542, 978, 1092
PfeI GAWTC 8 cut(s) 5, 68, 841, 1093, 1146, 1286, 1322, 1503
PfoI TCCNGGA 1 cut(s) 1141
PkrI GCNGC 4 cut(s) 508, 718, 988, 1341
PleI GAGTC 2 cut(s) 280, 684
PpsI GAGTC 2 cut(s) 280, 684
PpuMI RGGWCCY 1 cut(s) 1357
Psp1406I AACGTT 1 cut(s) 1252
Psp5II RGGWCCY 1 cut(s) 1357
Psp6I CCWGG 4 cut(s) 157, 866, 1008, 1141
PspGI CCWGG 4 cut(s) 157, 866, 1008, 1141
PspN4I GGNNCC 5 cut(s) 243, 330, 545, 1303, 1359
PspPI GGNCC 4 cut(s) 241, 328, 1078, 1357
PspPPI RGGWCCY 1 cut(s) 1357
PstNI CAGNNNCTG 1 cut(s) 563
PsuI RGATCY 1 cut(s) 968
RruI TCGCGA 1 cut(s) 1497
RsaI GTAC 1 cut(s) 408
RsaNI GTAC 1 cut(s) 407
RseI CAYNNNNRTG 3 cut(s) 365, 1204, 1295
SacII CCGCGG 1 cut(s) 327
SaqAI TTAA 3 cut(s) 105, 420, 909
SatI GCNGC 4 cut(s) 507, 717, 987, 1340
Sau3AI GATC 6 cut(s) 311, 637, 811, 968, 1114, 1437
Sau96I GGNCC 4 cut(s) 241, 328, 1078, 1357
SchI GAGTC 2 cut(s) 280, 685
ScrFI CCNGG 4 cut(s) 159, 868, 1010, 1143
SfaNI GCATC 8 cut(s) 332, 387, 550, 583, 853, 896, 1057, 1177
Sfr303I CCGCGG 1 cut(s) 327
SgrBI CCGCGG 1 cut(s) 327
SinI GGWCC 3 cut(s) 241, 328, 1357
SmiMI CAYNNNNRTG 3 cut(s) 365, 1204, 1295
SsiI CCGC 4 cut(s) 232, 324, 326, 986
SspMI CTAG 1 cut(s) 228
StyD4I CCNGG 4 cut(s) 157, 866, 1008, 1141
StyI CCWWGG 3 cut(s) 227, 547, 800
TaaI ACNGT 3 cut(s) 470, 731, 1510
TaiI ACGT 2 cut(s) 1255, 1434
TaqI TCGA 3 cut(s) 260, 649, 1275
TauI GCSGC 1 cut(s) 989
TfiI GAWTC 8 cut(s) 5, 68, 841, 1093, 1146, 1286, 1322, 1503
Tru1I TTAA 3 cut(s) 105, 420, 909
Tru9I TTAA 3 cut(s) 105, 420, 909
TscAI CASTG 2 cut(s) 726, 996
TseFI GTSAC 2 cut(s) 725, 852
TseI GCWGC 3 cut(s) 506, 716, 1339
Tsp45I GTSAC 2 cut(s) 725, 852
TspDTI ATGAA 1 cut(s) 551
TspGWI ACGGA 1 cut(s) 1497
TspRI CASTG 2 cut(s) 726, 996
VpaK11BI GGWCC 3 cut(s) 241, 328, 1357
XapI RAATTY 1 cut(s) 1100
XmaJI CCTAGG 1 cut(s) 227
XmiI GTMKAC 1 cut(s) 1347
XmnI GAANNNNTTC 3 cut(s) 542, 978, 1092
XspI CTAG 1 cut(s) 228
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.