AT4G39210

This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor, ADP- glucose from Glc-1-P and ATP

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
Physical Location & Seq
Forward (+)
18259547 .. 18263468
3922 bp
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UTR
Exon/CDS
Intron
AT4G39210.2

Sequence Viewer

Length: 1566 bp
ATGGATTCTTGTTGCAACTTTAGCTTGGGGACAAAAACTGTCTTGGCCAAAGACAGTTTCAAGAATGTAGAGAACAAATTTTTGGGTGAGAAGATCAAAGGAAGCGTCTTGAAGCCTTTTTCTTCAGATTTGAGTTCCAAGAAGTTCAGAAATCGAAAATTGAGGCCCGGTGTTGCTTACGCTATTGCTACCTCAAAGAATGCTAAAGAGGCTTTGAAAAATCAACCTTCCATGTTTGAGAGAAGAAGAGCAGATCCTAAAAATGTGGCTGCAATCATTCTAGGAGGAGGCGATGGAGCTAAACTCTTTCCTCTTACCAAGCGAGCAGCAACACCTGCTGTTCCTGTGGGTGGATGCTATAGGATGATCGATATCCCGATGAGTAATTGCATTAACAGTTGCATAAACAAGATTTTCGTGCTGACTCAGTTTAACTCGGCTTCCCTCAATCGCCATTTGGCTCGTACTTATTTTGGGAATGGCATAAACTTTGGAGATGGTTTTGTTGAGGTTCTGGCTGCTACACAAACTCCTGGTGAAGCCGGGAAAAAGTGGTTTCAAGGCACAGCTGATGCTGTGAGAAAATTTCTGTGGGTGTTTGAGGATGCTAAGAACAGGAACATTGAGAATATAATCATCTTGTCTGGAGATCACCTATATAGAATGAACTATATGGACTTTGTTCAGCACCATGTCGATAGTAAAGCCGATATTACTCTTTCGTGCGCGCCGGTTGATGAGAGCCGTGCGTCGGAGTATGGACTGGTCAATATTGATCGAAGCGGGCGTGTAGTCCATTTCTCTGAGAAACCAACTGGCATCGATCTGAAATCAATGCAAACCGATACTACTATGCATGGACTGTCTCATCAAGAAGCAGCAAAATCTCCATACATTGCGTCAATGGGAGTTTATTGTTTCAAAACCGAAGCTTTACTGAAGCTTCTGACATGGCGGTATCCGAGTTCCAATGACTTTGGGTCTGAAATTATTCCTGCAGCTATAAAAGATCACAATGTTCAAGGATACATCTACAGAGACTATTGGGAAGACATCGGAACTATTAAGAGTTTCTATGAAGCTAATATTGCTCTTGTCGAGGAGCATCCCAAGTTTGAGTTTTACGATCAGAATACACCTTTCTACACTTCTCCTCGGTTTCTACCACCCACCAAAACCGAGAAGTGCCGGATTGTAAATTCGGTAATCTCACACGGATGTTTCTTGGGAGAATGCAGCATCCAACGTTCCATTATTGGTGAAAGATCACGTCTTGACTATGGTGTTGAGCTTCAGGATACTCTTATGTTAGGAGCGGATAGTTACCAAACCGAATCTGAGATCGCGTCTCTGCTTGCGGAAGGAAATGTTCCAATTGGCATTGGCCGAGATACAAAGATCAGGAAATGCATCATTGACAAGAATGCAAAGATCGGGAAAAACGTGGTGATCATGAACAAAGATGATGTTAAGGAGGCTGATAGGCCAGAGGAAGGATTCTACATTCGATCTGGAATCACTGTGGTTGTCGAAAAGGCCACCATTAAAGACGGTACTGTGATATGA

Protein Analysis

521

Amino Acids

58.03

Weight (kDa)

8.66

Isoelectric Point (pI)

37.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NTP_transferase PF00483 91 - 365 4.2e-67 Nucleotidyl transferase
LbH_GLGC PF25247 386 - 520 3.7e-50 GLGC left-handed parallel beta-helix domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 343
Acc36I ACCTGC 1 cut(s) 343
AccBSI CCGCTC 1 cut(s) 1316
AccII CGCG 2 cut(s) 728, 1346
AciI CCGC 4 cut(s) 783, 955, 1316, 1358
AclI AACGTT 1 cut(s) 1246
AclWI GGATC 1 cut(s) 248
AcoI YGGCCR 2 cut(s) 45, 1384
AcsI RAATTY 3 cut(s) 77, 584, 1198
AcuI CTGAAG 3 cut(s) 108, 959, 1277
AfaI GTAC 2 cut(s) 466, 1555
AfiI CCNNNNNNNGG 3 cut(s) 350, 751, 1493
AgsI TTSAA 6 cut(s) 61, 112, 217, 560, 922, 1022
AhdI GACNNNNNGTC 1 cut(s) 979
AjiI CACGTC 1 cut(s) 1271
AjnI CCWGG 1 cut(s) 532
AjuI GAANNNNNNNTTGG 4 cut(s) 41, 65, 73, 97
AluBI AGCT 8 cut(s) 24, 299, 569, 932, 943, 1001, 1082, 1291
AluI AGCT 8 cut(s) 24, 299, 569, 932, 943, 1001, 1082, 1291
Alw26I GTCTC 3 cut(s) 870, 1032, 1353
AlwI GGATC 1 cut(s) 248
AoxI GGCC 5 cut(s) 45, 164, 1384, 1484, 1536
ApeKI GCWGC 6 cut(s) 269, 326, 518, 878, 998, 1236
ApoI RAATTY 3 cut(s) 77, 584, 1198
ArsI GACNNNNNNTTYG 2 cut(s) 90, 122
Asp700I GAANNNNTTC 1 cut(s) 990
AspLEI GCGC 2 cut(s) 728, 730
AspS9I GGNCC 1 cut(s) 165
AsuC2I CCSGG 2 cut(s) 168, 544
AsuHPI GGTGA 5 cut(s) 98, 548, 644, 1271, 1459
BalI TGGCCA 1 cut(s) 47
BbsI GAAGAC 1 cut(s) 1056
BbvI GCAGC 6 cut(s) 256, 338, 505, 890, 1010, 1248
BccI CCATC 2 cut(s) 287, 491
BceAI ACGGC 1 cut(s) 729
BciT130I CCWGG 1 cut(s) 534
BciVI GTATCC 3 cut(s) 969, 1019, 1291
BclI TGATCA 1 cut(s) 1449
BcnI CCSGG 2 cut(s) 168, 544
BcoDI GTCTC 3 cut(s) 870, 1032, 1353
BfaI CTAG 1 cut(s) 281
BfmI CTRYAG 3 cut(s) 358, 996, 1033
BfuAI ACCTGC 1 cut(s) 343
BfuI GTATCC 3 cut(s) 969, 1019, 1291
BisI GCNGC 6 cut(s) 270, 327, 519, 879, 999, 1237
BlsI GCNGC 6 cut(s) 271, 328, 520, 880, 1000, 1238
Bme1390I CCNGG 3 cut(s) 168, 534, 544
BmeRI GACNNNNNGTC 1 cut(s) 979
BmgBI CACGTC 1 cut(s) 1271
BmgT120I GGNCC 1 cut(s) 165
BmrFI CCNGG 3 cut(s) 168, 534, 544
BmsI GCATC 7 cut(s) 344, 562, 595, 828, 1114, 1248, 1419
BpiI GAAGAC 1 cut(s) 1056
BplI GAGNNNNNCTC 2 cut(s) 288, 320
BpmI CTGGAG 1 cut(s) 666
BpuMI CCSGG 2 cut(s) 168, 544
Bsa29I ATCGAT 2 cut(s) 369, 822
BsaBI GATNNNNATC 1 cut(s) 371
BsaJI CCNNGG 1 cut(s) 1154
BsaXI ACNNNNNCTCC 2 cut(s) 514, 544
Bsc4I CCNNNNNNNGG 3 cut(s) 350, 751, 1493
Bse118I RCCGGY 1 cut(s) 730
Bse1I ACTGG 2 cut(s) 768, 820
Bse3DI GCAATG 1 cut(s) 894
Bse8I GATNNNNATC 1 cut(s) 371
BseBI CCWGG 1 cut(s) 534
BseCI ATCGAT 2 cut(s) 369, 822
BseDI CCNNGG 1 cut(s) 1154
BseGI GGATG 6 cut(s) 359, 369, 610, 1105, 1223, 1239
BseJI GATNNNNATC 1 cut(s) 371
BseLI CCNNNNNNNGG 3 cut(s) 350, 751, 1493
BseMI GCAATG 1 cut(s) 894
BseMII CTCAG 3 cut(s) 440, 795, 1329
BseNI ACTGG 2 cut(s) 768, 820
BsePI GCGCGC 1 cut(s) 726
BseRI GAGGAG 3 cut(s) 300, 1115, 1143
BseXI GCAGC 6 cut(s) 256, 338, 505, 890, 1010, 1248
Bsh1236I CGCG 2 cut(s) 728, 1346
BshFI GGCC 5 cut(s) 47, 166, 1386, 1486, 1538
BshVI ATCGAT 2 cut(s) 369, 822
BsiSI CCGG 4 cut(s) 168, 543, 731, 1189
BslFI GGGAC 1 cut(s) 43
BslI CCNNNNNNNGG 3 cut(s) 350, 751, 1493
BsmAI GTCTC 3 cut(s) 870, 1032, 1353
BsmBI CGTCTC 1 cut(s) 1353
BsmFI GGGAC 1 cut(s) 43
BsmI GAATGC 3 cut(s) 205, 1238, 1429
BsnI GGCC 5 cut(s) 47, 166, 1386, 1486, 1538
BspACI CCGC 4 cut(s) 783, 955, 1316, 1358
BspANI GGCC 5 cut(s) 47, 166, 1386, 1486, 1538
BspCNI CTCAG 3 cut(s) 439, 796, 1330
BspDI ATCGAT 2 cut(s) 369, 822
BspFNI CGCG 2 cut(s) 728, 1346
BspHI TCATGA 1 cut(s) 1452
BspMAI CTGCAG 1 cut(s) 1000
BspMI ACCTGC 1 cut(s) 343
BspPI GGATC 1 cut(s) 248
BspQI GCTCTTC 1 cut(s) 241
BsrBI CCGCTC 1 cut(s) 1316
BsrDI GCAATG 1 cut(s) 894
BsrFI RCCGGY 1 cut(s) 730
BsrI ACTGG 2 cut(s) 768, 820
BssAI RCCGGY 1 cut(s) 730
BssECI CCNNGG 1 cut(s) 1154
BssHII GCGCGC 1 cut(s) 726
Bst2UI CCWGG 1 cut(s) 534
Bst4CI ACNGT 7 cut(s) 40, 56, 398, 864, 1522, 1553, 1558
Bst6I CTCTTC 1 cut(s) 241
BstAPI GCANNNNNTGC 1 cut(s) 335
BstC8I GCNNGC 4 cut(s) 324, 728, 785, 1356
BstDEI CTNAG 4 cut(s) 426, 609, 804, 1338
BstF5I GGATG 6 cut(s) 359, 369, 610, 1105, 1223, 1239
BstFNI CGCG 2 cut(s) 728, 1346
BstHHI GCGC 2 cut(s) 728, 730
BstMAI GTCTC 3 cut(s) 870, 1032, 1353
BstMWI GCNNNNNNNGC 4 cut(s) 21, 209, 335, 1088
BstNI CCWGG 1 cut(s) 534
BstSCI CCNGG 3 cut(s) 166, 532, 542
BstSFI CTRYAG 3 cut(s) 358, 996, 1033
BstUI CGCG 2 cut(s) 728, 1346
BstV1I GCAGC 6 cut(s) 256, 338, 505, 890, 1010, 1248
BstV2I GAAGAC 1 cut(s) 1056
BstX2I RGATCY 1 cut(s) 253
BstYI RGATCY 1 cut(s) 253
Bsu15I ATCGAT 2 cut(s) 369, 822
BsuI GTATCC 3 cut(s) 969, 1019, 1291
BsuRI GGCC 5 cut(s) 47, 166, 1386, 1486, 1538
BsuTUI ATCGAT 2 cut(s) 369, 822
BtgZI GCGATG 1 cut(s) 306
BtrI CACGTC 1 cut(s) 1271
BtsCI GGATG 6 cut(s) 359, 369, 610, 1105, 1223, 1239
BtsIMutI CAGTG 1 cut(s) 1518
BveI ACCTGC 1 cut(s) 343
Cac8I GCNNGC 4 cut(s) 324, 728, 785, 1356
CciI TCATGA 1 cut(s) 1452
CfoI GCGC 2 cut(s) 728, 730
Cfr10I RCCGGY 1 cut(s) 730
Cfr13I GGNCC 1 cut(s) 165
ClaI ATCGAT 2 cut(s) 369, 822
CseI GACGC 4 cut(s) 94, 738, 888, 1335
Csp6I GTAC 2 cut(s) 465, 1554
CviAII CATG 5 cut(s) 232, 692, 857, 951, 1453
CviQI GTAC 2 cut(s) 465, 1554
DdeI CTNAG 4 cut(s) 426, 609, 804, 1338
DriI GACNNNNNGTC 1 cut(s) 979
EaeI YGGCCR 2 cut(s) 45, 1384
Eam1104I CTCTTC 1 cut(s) 241
Eam1105I GACNNNNNGTC 1 cut(s) 979
EarI CTCTTC 1 cut(s) 241
Eco32I GATATC 1 cut(s) 373
Eco57I CTGAAG 3 cut(s) 108, 959, 1277
EcoRII CCWGG 1 cut(s) 532
EcoRV GATATC 1 cut(s) 373
EcoT22I ATGCAT 2 cut(s) 858, 1412
Esp3I CGTCTC 1 cut(s) 1353
FaeI CATG 5 cut(s) 235, 695, 860, 954, 1456
FaqI GGGAC 1 cut(s) 43
FatI CATG 5 cut(s) 231, 691, 856, 950, 1452
FauI CCCGC 1 cut(s) 776
FbaI TGATCA 1 cut(s) 1449
Fnu4HI GCNGC 6 cut(s) 270, 327, 519, 879, 999, 1237
FokI GGATG 6 cut(s) 366, 376, 617, 1092, 1226, 1230
Fsp4HI GCNGC 6 cut(s) 270, 327, 519, 879, 999, 1237
FspBI CTAG 1 cut(s) 281
GlaI GCGC 2 cut(s) 727, 729
GluI GCNGC 6 cut(s) 270, 327, 519, 879, 999, 1237
GsuI CTGGAG 1 cut(s) 666
HaeIII GGCC 5 cut(s) 47, 166, 1386, 1486, 1538
HapII CCGG 4 cut(s) 168, 543, 731, 1189
HgaI GACGC 4 cut(s) 94, 738, 888, 1335
HhaI GCGC 2 cut(s) 728, 730
Hin1II CATG 5 cut(s) 235, 695, 860, 954, 1456
Hin6I GCGC 2 cut(s) 726, 728
HinP1I GCGC 2 cut(s) 726, 728
HindIII AAGCTT 2 cut(s) 930, 941
HinfI GANTC 5 cut(s) 5, 424, 1334, 1497, 1515
HpaII CCGG 4 cut(s) 168, 543, 731, 1189
HphI GGTGA 5 cut(s) 98, 548, 644, 1271, 1459
Hpy99I CGWCG 1 cut(s) 754
HpyAV CCTTC 3 cut(s) 237, 1355, 1487
HpyCH4III ACNGT 7 cut(s) 40, 56, 398, 864, 1522, 1553, 1558
HpyCH4IV ACGT 3 cut(s) 1246, 1270, 1443
HpyF10VI GCNNNNNNNGC 4 cut(s) 21, 209, 335, 1088
HpyF3I CTNAG 4 cut(s) 426, 609, 804, 1338
HpySE526I ACGT 3 cut(s) 1246, 1270, 1443
Hsp92II CATG 5 cut(s) 235, 695, 860, 954, 1456
HspAI GCGC 2 cut(s) 726, 728
Ksp22I TGATCA 1 cut(s) 1449
LguI GCTCTTC 1 cut(s) 241
LmnI GCTCC 3 cut(s) 296, 1102, 1313
Lsp1109I GCAGC 6 cut(s) 256, 338, 505, 890, 1010, 1248
LweI GCATC 7 cut(s) 344, 562, 595, 828, 1114, 1248, 1419
MaeI CTAG 1 cut(s) 281
MaeII ACGT 3 cut(s) 1246, 1270, 1443
MaeIII GTNAC 1 cut(s) 1322
MbiI CCGCTC 1 cut(s) 1316
MboII GAAGA 5 cut(s) 103, 114, 255, 258, 1061
MfeI CAATTG 1 cut(s) 1374
MflI RGATCY 1 cut(s) 253
MlsI TGGCCA 1 cut(s) 47
MluCI AATT 7 cut(s) 77, 158, 385, 584, 987, 1198, 1374
MluNI TGGCCA 1 cut(s) 47
MlyI GAGTC 1 cut(s) 418
MmeI TCCRAC 2 cut(s) 732, 1267
Mox20I TGGCCA 1 cut(s) 47
Mph1103I ATGCAT 2 cut(s) 858, 1412
MroXI GAANNNNTTC 1 cut(s) 990
MscI TGGCCA 1 cut(s) 47
MseI TTAA 5 cut(s) 393, 432, 1065, 1470, 1545
MslI CAYNNNNRTG 1 cut(s) 1216
Msp20I TGGCCA 1 cut(s) 47
MspA1I CMGCKG 1 cut(s) 569
MspI CCGG 4 cut(s) 168, 543, 731, 1189
MspR9I CCNGG 3 cut(s) 168, 534, 544
MunI CAATTG 1 cut(s) 1374
Mva1269I GAATGC 3 cut(s) 205, 1238, 1429
MvaI CCWGG 1 cut(s) 534
MvnI CGCG 2 cut(s) 728, 1346
MwoI GCNNNNNNNGC 4 cut(s) 21, 209, 335, 1088
NciI CCSGG 2 cut(s) 168, 544
NlaIII CATG 5 cut(s) 235, 695, 860, 954, 1456
NmeAIII GCCGAG 2 cut(s) 416, 1412
NsiI ATGCAT 2 cut(s) 858, 1412
PagI TCATGA 1 cut(s) 1452
PaqCI CACCTGC 1 cut(s) 343
PauI GCGCGC 1 cut(s) 726
PciSI GCTCTTC 1 cut(s) 241
PcsI WCGNNNNNNNCGW 2 cut(s) 784, 1440
PctI GAATGC 3 cut(s) 205, 1238, 1429
PdmI GAANNNNTTC 1 cut(s) 990
PfeI GAWTC 4 cut(s) 5, 1334, 1497, 1515
PkrI GCNGC 6 cut(s) 271, 328, 520, 880, 1000, 1238
PleI GAGTC 1 cut(s) 418
PpsI GAGTC 1 cut(s) 418
Psp1406I AACGTT 1 cut(s) 1246
Psp6I CCWGG 1 cut(s) 532
PspGI CCWGG 1 cut(s) 532
PspPI GGNCC 1 cut(s) 165
PstI CTGCAG 1 cut(s) 1000
PsuI RGATCY 1 cut(s) 253
PteI GCGCGC 1 cut(s) 726
PvuII CAGCTG 1 cut(s) 569
RsaI GTAC 2 cut(s) 466, 1555
RsaNI GTAC 2 cut(s) 465, 1554
RseI CAYNNNNRTG 1 cut(s) 1216
SapI GCTCTTC 1 cut(s) 241
SaqAI TTAA 5 cut(s) 393, 432, 1065, 1470, 1545
SatI GCNGC 6 cut(s) 270, 327, 519, 879, 999, 1237
Sau96I GGNCC 1 cut(s) 165
SchI GAGTC 1 cut(s) 418
ScrFI CCNGG 3 cut(s) 168, 534, 544
SfaNI GCATC 7 cut(s) 344, 562, 595, 828, 1114, 1248, 1419
SfcI CTRYAG 3 cut(s) 358, 996, 1033
SmiMI CAYNNNNRTG 1 cut(s) 1216
Sse9I AATT 7 cut(s) 77, 158, 385, 584, 987, 1198, 1374
SsiI CCGC 4 cut(s) 783, 955, 1316, 1358
SspI AATATT 2 cut(s) 772, 1087
SspMI CTAG 1 cut(s) 281
StyD4I CCNGG 3 cut(s) 166, 532, 542
TaaI ACNGT 7 cut(s) 40, 56, 398, 864, 1522, 1553, 1558
TaiI ACGT 3 cut(s) 1249, 1273, 1446
TaqI TCGA 8 cut(s) 154, 369, 696, 778, 822, 1098, 1507, 1530
TasI AATT 7 cut(s) 77, 158, 385, 584, 987, 1198, 1374
TfiI GAWTC 4 cut(s) 5, 1334, 1497, 1515
Tru1I TTAA 5 cut(s) 393, 432, 1065, 1470, 1545
Tru9I TTAA 5 cut(s) 393, 432, 1065, 1470, 1545
TscAI CASTG 1 cut(s) 1525
TseI GCWGC 6 cut(s) 269, 326, 518, 878, 998, 1236
TspDTI ATGAA 3 cut(s) 680, 1092, 1469
TspGWI ACGGA 1 cut(s) 1230
TspRI CASTG 1 cut(s) 1525
XapI RAATTY 3 cut(s) 77, 584, 1198
XmnI GAANNNNTTC 1 cut(s) 990
XspI CTAG 1 cut(s) 281
Zsp2I ATGCAT 2 cut(s) 858, 1412
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.