Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0004931

Physical Location & Seq

Genomic Coordinates Forward (+)

8173494 .. 8177978

Gene Structure 4485 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g09250.t5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1305 bp

ATGGATTCATGGTGTGTGACCCTGAAGCCAAACTCCCATTTTAGACAGCCAACTCAAGCTGGGCTTTGTAGTGGGGCTAATGGCTTTCTGGGTGAGAGGATCAGAGAGAGTTTGGGTAACAGGGGTTGGTTACGTCGAACTGAGAAGAAAAGACCTAGTGTTGTTCGTTCTGTTGTTACATCAAAGGACTTTGAGACGATCCTGAAAGTCCCAACTTACCACAGACTAAGAGTGGACCCTAAGAATGTTGCTTCGATCATATTGGGAGGAGGGGCAGGGACTCAGCTATTTCCTCTTACCAGAAGAGCAGCCACACCTGCAGTTCCTGTTGGTGGATGCTACCGGCTTATTGACATTCCGATGAGCAATTGCATCAACAGCAACATAAACAAAATTTTCGTGCTAACCCAGTTTAATTCCACTTCTCTCAATCGCCACCTTGCTCGCACCTATTTTGGAAATGGTATCAACTTCGGGGATGGATTTGTGGAGGTTCTAGCAGCCACTCAAACATCTGGGGAAGCAGGAATGGATTGGTTCCAAGGAACAGCGGATGCTGTGAGGCAATTTGTATGGGTATTTGAGGATGCTAAGAATAGGAACGTTGAAAATATACTGATTTTGTCTGGGGATCATCTTTATCGAATGGACTATATGGACTTTGTGCAGAGTCACGTTGATAGCAATGCCGATATCACACTTTCATGTGCAGTTGTGGGTGACAGCCGTGCATCTGATTATGGTTTGGTGAAGATAGACAGCAGAGGTAAAATCATCCAGTTTGCTGAAAAACCAAGGGGAGCTGGTCTAAAAGCAATGCAATCAGATACAACACTTCTTGGATTCTCCCCACAAGATGCTCTAAAATCCCCATATGTTGCATCAATGGGAGTGTATGTATTTAAGACAGATATTTTACTAGAACTTCTGAAAAAGACTTATCCAAATTCGAACGACTTCGGATCTGAAATCATTCCTGCAGCAGTGGAAGAGCGCAATGTCCAAGCATATATATTCAGAGACTACTGGGAGGATATCGGAACTATACAGTCATTTTATGATGCTAACTTGGCCCTCACTGAAGAGTTCCCGAAGTTTCAGTTTTATGACCCAAAGACACCTTTCTTCACTTCTCCTCGGTTCTTACCACCAACCAAGATTGACAATTCCCGGGTTGTGGATGCAATAATCTCACATGGATGTTTCTTGCAAGAATGTCTCGTCCAAAGTTCAATAGTGGGTGAACGCTCACGGTTAGATTATGGTGTTGAGCTGAAGGTGAATTCTTATAATTTTCCAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005976 GO:0005982 GO:0006073 GO:0008150 GO:0008152 GO:0008878 GO:0009058 GO:0009059 GO:0009250 GO:0009501 GO:0009507 GO:0009536 GO:0009987 GO:0010170 GO:0016051 GO:0016740 GO:0016772 GO:0016779 GO:0019252 GO:0032991 GO:0033692 GO:0034637 GO:0034645 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0061695 GO:0070566 GO:0071704 GO:1901576 GO:1902494 GO:1902503 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00500 ko00520 ko01100 ko01110 ko02026 map00500 map00520 map01100 map01110 map02026

Pfam Domains

Protein Families

NTP_transferase

Protein Analysis

435

Amino Acids

48.48

Weight (kDa)

7.57

Isoelectric Point (pI)

40.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NTP_transferase	PF00483	85 - 269	2.8e-51	Nucleotidyl transferase
LbH_GLGC	PF25247	279 - 413	1.4e-48	GLGC left-handed parallel beta-helix domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004931)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G21590 AT2G21590 AT2G21590 AT2G21590 AT2G21590 AT2G21590 AT2G21590 AT4G39210 AT4G39210
fragaria_vesca	FvH4_2g09250 FvH4_2g09250 FvH4_2g09250 FvH4_2g09250
malus_domestica	MD05G1063400.v1.1 MD10G1072000.v1.1
prunus_persica	Prupe.8G093400_v2.0.a1 Prupe.8G093900_v2.0.a1
pyrus_communis	pycom05g05490 pycom10g05710
rosa_chinensis	RchiOBHm_Chr6g0265271
rosa_laevigata	RLG00000014206
rosa_multiflora	Rmu_sc0004967.1_g000006
rosa_roxburghii	Rroxscaffold_175G00432260
rosa_rugosa	Rorug06G0016200 Rorug06G0016300
rosa_samantha	Rh6AG137800 Rh6BG136600 Rh6CG134900 Rh6DG121200
rosa_wichuraiana	Rw6G011900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1290
AarI	CACCTGC	1 cut(s)	325
Acc36I	ACCTGC	1 cut(s)	325
AciI	CCGC	1 cut(s)	551
AclI	AACGTT	1 cut(s)	603
AclWI	GGATC	4 cut(s)	107, 193, 639, 970
AcsI	RAATTY	3 cut(s)	393, 946, 1282
AcuI	CTGAAG	3 cut(s)	44, 1101, 1295
AfiI	CCNNNNNNNGG	2 cut(s)	332, 1177
AgsI	TTSAA	2 cut(s)	608, 1233
AluBI	AGCT	4 cut(s)	59, 286, 803, 1273
AluI	AGCT	4 cut(s)	59, 286, 803, 1273
Alw26I	GTCTC	3 cut(s)	188, 1014, 1223
AlwI	GGATC	4 cut(s)	107, 193, 639, 970
AlwNI	CAGNNNCTG	1 cut(s)	326
Ama87I	CYCGRG	1 cut(s)	1170
AoxI	GGCC	1 cut(s)	1071
ApeKI	GCWGC	3 cut(s)	308, 500, 980
ApoI	RAATTY	3 cut(s)	393, 946, 1282
Asp700I	GAANNNNTTC	2 cut(s)	956, 972
AspLEI	GCGC	1 cut(s)	996
AspS9I	GGNCC	2 cut(s)	235, 1072
AsuC2I	CCSGG	2 cut(s)	1171, 1172
AsuHPI	GGTGA	5 cut(s)	104, 731, 760, 1253, 1291
AsuII	TTCGAA	1 cut(s)	950
AvaI	CYCGRG	1 cut(s)	1170
AvaII	GGWCC	1 cut(s)	235
BbvI	GCAGC	3 cut(s)	320, 512, 992
BccI	CCATC	1 cut(s)	473
BceAI	ACGGC	1 cut(s)	711
BcnI	CCSGG	2 cut(s)	1171, 1172
BcoDI	GTCTC	3 cut(s)	188, 1014, 1223
BfaI	CTAG	3 cut(s)	156, 497, 920
BfmI	CTRYAG	2 cut(s)	318, 978
BfuAI	ACCTGC	1 cut(s)	325
BisI	GCNGC	3 cut(s)	309, 501, 981
BlsI	GCNGC	3 cut(s)	310, 502, 982
Bme1390I	CCNGG	2 cut(s)	1171, 1172
Bme18I	GGWCC	1 cut(s)	235
BmeT110I	CYCGRG	1 cut(s)	1170
BmgT120I	GGNCC	2 cut(s)	235, 1072
BmiI	GGNNCC	2 cut(s)	237, 539
BmrFI	CCNGG	2 cut(s)	1171, 1172
BmrI	ACTGGG	2 cut(s)	403, 1036
BmsI	GCATC	9 cut(s)	326, 381, 544, 577, 740, 847, 890, 1051, 1171
BmuI	ACTGGG	2 cut(s)	403, 1036
Bpu14I	TTCGAA	1 cut(s)	950
BpuEI	CTTGAG	1 cut(s)	39
BpuMI	CCSGG	2 cut(s)	1171, 1172
BsaJI	CCNNGG	4 cut(s)	541, 794, 1136, 1170
BsaXI	ACNNNNNCTCC	2 cut(s)	882, 912
Bsc4I	CCNNNNNNNGG	2 cut(s)	332, 1177
Bse118I	RCCGGY	1 cut(s)	342
Bse1I	ACTGG	3 cut(s)	409, 778, 1031
Bse3DI	GCAATG	3 cut(s)	691, 822, 1003
BseDI	CCNNGG	4 cut(s)	541, 794, 1136, 1170
BseGI	GGATG	7 cut(s)	341, 484, 559, 592, 774, 1186, 1205
BseLI	CCNNNNNNNGG	2 cut(s)	332, 1177
BseMI	GCAATG	3 cut(s)	691, 822, 1003
BseMII	CTCAG	2 cut(s)	132, 296
BseNI	ACTGG	3 cut(s)	409, 778, 1031
BseRI	GAGGAG	2 cut(s)	282, 1125
BseXI	GCAGC	3 cut(s)	320, 512, 992
BseYI	CCCAGC	1 cut(s)	59
BsgI	GTGCAG	2 cut(s)	686, 729
BshFI	GGCC	1 cut(s)	1073
BsiHKCI	CYCGRG	1 cut(s)	1170
BsiSI	CCGG	2 cut(s)	343, 1171
BslFI	GGGAC	2 cut(s)	194, 292
BslI	CCNNNNNNNGG	2 cut(s)	332, 1177
BsmAI	GTCTC	3 cut(s)	188, 1014, 1223
BsmBI	CGTCTC	1 cut(s)	188
BsmFI	GGGAC	2 cut(s)	194, 292
BsnI	GGCC	1 cut(s)	1073
BsoBI	CYCGRG	1 cut(s)	1170
Bsp119I	TTCGAA	1 cut(s)	950
Bsp143I	GATC	5 cut(s)	99, 198, 255, 631, 962
BspACI	CCGC	1 cut(s)	551
BspANI	GGCC	1 cut(s)	1073
BspCNI	CTCAG	2 cut(s)	133, 295
BspLI	GGNNCC	2 cut(s)	237, 539
BspMAI	CTGCAG	2 cut(s)	322, 982
BspMI	ACCTGC	1 cut(s)	325
BspPI	GGATC	4 cut(s)	107, 193, 639, 970
BspQI	GCTCTTC	2 cut(s)	298, 984
BspT104I	TTCGAA	1 cut(s)	950
BsrDI	GCAATG	3 cut(s)	691, 822, 1003
BsrFI	RCCGGY	1 cut(s)	342
BsrI	ACTGG	3 cut(s)	409, 778, 1031
BssAI	RCCGGY	1 cut(s)	342
BssECI	CCNNGG	4 cut(s)	541, 794, 1136, 1170
BssMI	GATC	5 cut(s)	99, 198, 255, 631, 962
BssT1I	CCWWGG	2 cut(s)	541, 794
Bst4CI	ACNGT	2 cut(s)	1050, 1254
Bst6I	CTCTTC	3 cut(s)	298, 984, 1077
BstBI	TTCGAA	1 cut(s)	950
BstC8I	GCNNGC	1 cut(s)	445
BstDEI	CTNAG	5 cut(s)	141, 227, 240, 282, 591
BstF5I	GGATG	7 cut(s)	341, 484, 559, 592, 774, 1186, 1205
BstHHI	GCGC	1 cut(s)	996
BstKTI	GATC	5 cut(s)	102, 201, 258, 634, 965
BstMAI	GTCTC	3 cut(s)	188, 1014, 1223
BstMBI	GATC	5 cut(s)	99, 198, 255, 631, 962
BstMWI	GCNNNNNNNGC	3 cut(s)	317, 378, 1070
BstSCI	CCNGG	2 cut(s)	1169, 1170
BstSFI	CTRYAG	2 cut(s)	318, 978
BstV1I	GCAGC	3 cut(s)	320, 512, 992
BstX2I	RGATCY	1 cut(s)	962
BstYI	RGATCY	1 cut(s)	962
BsuRI	GGCC	1 cut(s)	1073
BtsCI	GGATG	7 cut(s)	341, 484, 559, 592, 774, 1186, 1205
BtsI	GCAGTG	1 cut(s)	990
BtsIMutI	CAGTG	2 cut(s)	990, 1077
BveI	ACCTGC	1 cut(s)	325
Cac8I	GCNNGC	1 cut(s)	445
CaiI	CAGNNNCTG	1 cut(s)	326
CfoI	GCGC	1 cut(s)	996
Cfr10I	RCCGGY	1 cut(s)	342
Cfr13I	GGNCC	2 cut(s)	235, 1072
Cfr9I	CCCGGG	1 cut(s)	1170
CviAII	CATG	3 cut(s)	9, 705, 1196
DdeI	CTNAG	5 cut(s)	141, 227, 240, 282, 591
DpnI	GATC	5 cut(s)	101, 200, 257, 633, 964
DpnII	GATC	5 cut(s)	99, 198, 255, 631, 962
Eam1104I	CTCTTC	3 cut(s)	298, 984, 1077
EarI	CTCTTC	3 cut(s)	298, 984, 1077
Eco130I	CCWWGG	2 cut(s)	541, 794
Eco32I	GATATC	2 cut(s)	694, 1036
Eco47I	GGWCC	1 cut(s)	235
Eco57I	CTGAAG	3 cut(s)	44, 1101, 1295
Eco88I	CYCGRG	1 cut(s)	1170
EcoRI	GAATTC	1 cut(s)	1282
EcoRV	GATATC	2 cut(s)	694, 1036
EcoT14I	CCWWGG	2 cut(s)	541, 794
ErhI	CCWWGG	2 cut(s)	541, 794
Esp3I	CGTCTC	1 cut(s)	188
FaeI	CATG	3 cut(s)	12, 708, 1199
FalI	AAGNNNNNCTT	2 cut(s)	48, 80
FaqI	GGGAC	2 cut(s)	194, 292
FatI	CATG	3 cut(s)	8, 704, 1195
FauNDI	CATATG	1 cut(s)	874
Fnu4HI	GCNGC	3 cut(s)	309, 501, 981
FokI	GGATG	7 cut(s)	348, 491, 566, 599, 761, 1193, 1212
Fsp4HI	GCNGC	3 cut(s)	309, 501, 981
FspBI	CTAG	3 cut(s)	156, 497, 920
GlaI	GCGC	1 cut(s)	995
GluI	GCNGC	3 cut(s)	309, 501, 981
GsaI	CCCAGC	1 cut(s)	63
HaeIII	GGCC	1 cut(s)	1073
HapII	CCGG	2 cut(s)	343, 1171
HhaI	GCGC	1 cut(s)	996
Hin1II	CATG	3 cut(s)	12, 708, 1199
Hin6I	GCGC	1 cut(s)	994
HinP1I	GCGC	1 cut(s)	994
HinfI	GANTC	4 cut(s)	5, 280, 670, 843
HpaII	CCGG	2 cut(s)	343, 1171
HphI	GGTGA	5 cut(s)	104, 731, 760, 1253, 1291
Hpy166II	GTNNAC	2 cut(s)	235, 1244
Hpy188I	TCNGA	9 cut(s)	104, 360, 736, 826, 930, 962, 967, 1019, 1040
Hpy188III	TCNNGA	2 cut(s)	202, 1090
Hpy8I	GTNNAC	2 cut(s)	235, 1244
Hpy99I	CGWCG	1 cut(s)	138
HpyAV	CCTTC	1 cut(s)	1270
HpyCH4III	ACNGT	2 cut(s)	1050, 1254
HpyCH4IV	ACGT	3 cut(s)	133, 603, 675
HpyF10VI	GCNNNNNNNGC	3 cut(s)	317, 378, 1070
HpyF3I	CTNAG	5 cut(s)	141, 227, 240, 282, 591
HpySE526I	ACGT	3 cut(s)	133, 603, 675
Hsp92II	CATG	3 cut(s)	12, 708, 1199
HspAI	GCGC	1 cut(s)	994
Kzo9I	GATC	5 cut(s)	99, 198, 255, 631, 962
LguI	GCTCTTC	2 cut(s)	298, 984
LmnI	GCTCC	1 cut(s)	800
Lsp1109I	GCAGC	3 cut(s)	320, 512, 992
LweI	GCATC	9 cut(s)	326, 381, 544, 577, 740, 847, 890, 1051, 1171
MaeI	CTAG	3 cut(s)	156, 497, 920
MaeII	ACGT	3 cut(s)	133, 603, 675
MaeIII	GTNAC	6 cut(s)	16, 116, 129, 175, 671, 719
MalI	GATC	5 cut(s)	101, 200, 257, 633, 964
MboI	GATC	5 cut(s)	99, 198, 255, 631, 962
MboII	GAAGA	6 cut(s)	157, 315, 763, 1001, 1094, 1117
MfeI	CAATTG	1 cut(s)	367
MflI	RGATCY	1 cut(s)	962
MluCI	AATT	9 cut(s)	367, 393, 415, 566, 946, 1165, 1282, 1291, 1300
MlyI	GAGTC	2 cut(s)	274, 679
MroXI	GAANNNNTTC	2 cut(s)	956, 972
MseI	TTAA	3 cut(s)	414, 903, 1303
MslI	CAYNNNNRTG	3 cut(s)	359, 703, 1198
MspA1I	CMGCKG	1 cut(s)	551
MspI	CCGG	2 cut(s)	343, 1171
MspR9I	CCNGG	2 cut(s)	1171, 1172
MunI	CAATTG	1 cut(s)	367
MwoI	GCNNNNNNNGC	3 cut(s)	317, 378, 1070
NciI	CCSGG	2 cut(s)	1171, 1172
NdeI	CATATG	1 cut(s)	874
NdeII	GATC	5 cut(s)	99, 198, 255, 631, 962
NlaIII	CATG	3 cut(s)	12, 708, 1199
NlaIV	GGNNCC	2 cut(s)	237, 539
NmuCI	GTSAC	3 cut(s)	16, 671, 719
NspV	TTCGAA	1 cut(s)	950
PaqCI	CACCTGC	1 cut(s)	325
PciSI	GCTCTTC	2 cut(s)	298, 984
PdmI	GAANNNNTTC	2 cut(s)	956, 972
PfeI	GAWTC	2 cut(s)	5, 843
PkrI	GCNGC	3 cut(s)	310, 502, 982
PleI	GAGTC	2 cut(s)	274, 678
PpsI	GAGTC	2 cut(s)	274, 678
PsiI	TTATAA	1 cut(s)	1290
Psp1406I	AACGTT	1 cut(s)	603
PspFI	CCCAGC	1 cut(s)	59
PspN4I	GGNNCC	2 cut(s)	237, 539
PspPI	GGNCC	2 cut(s)	235, 1072
PstI	CTGCAG	2 cut(s)	322, 982
PstNI	CAGNNNCTG	1 cut(s)	326
PsuI	RGATCY	1 cut(s)	962
RseI	CAYNNNNRTG	3 cut(s)	359, 703, 1198
SapI	GCTCTTC	2 cut(s)	298, 984
SaqAI	TTAA	3 cut(s)	414, 903, 1303
SatI	GCNGC	3 cut(s)	309, 501, 981
Sau3AI	GATC	5 cut(s)	99, 198, 255, 631, 962
Sau96I	GGNCC	2 cut(s)	235, 1072
SchI	GAGTC	2 cut(s)	274, 679
ScrFI	CCNGG	2 cut(s)	1171, 1172
SfaNI	GCATC	9 cut(s)	326, 381, 544, 577, 740, 847, 890, 1051, 1171
SfcI	CTRYAG	2 cut(s)	318, 978
SfuI	TTCGAA	1 cut(s)	950
SinI	GGWCC	1 cut(s)	235
SmaI	CCCGGG	1 cut(s)	1172
SmiMI	CAYNNNNRTG	3 cut(s)	359, 703, 1198
SmlI	CTYRAG	1 cut(s)	54
SmoI	CTYRAG	1 cut(s)	54
Sse9I	AATT	9 cut(s)	367, 393, 415, 566, 946, 1165, 1282, 1291, 1300
SsiI	CCGC	1 cut(s)	551
SspMI	CTAG	3 cut(s)	156, 497, 920
StyD4I	CCNGG	2 cut(s)	1169, 1170
StyI	CCWWGG	2 cut(s)	541, 794
TaaI	ACNGT	2 cut(s)	1050, 1254
TaiI	ACGT	3 cut(s)	136, 606, 678
TaqI	TCGA	4 cut(s)	136, 254, 643, 950
TasI	AATT	9 cut(s)	367, 393, 415, 566, 946, 1165, 1282, 1291, 1300
TfiI	GAWTC	2 cut(s)	5, 843
Tru1I	TTAA	3 cut(s)	414, 903, 1303
Tru9I	TTAA	3 cut(s)	414, 903, 1303
TscAI	CASTG	2 cut(s)	990, 1084
TseFI	GTSAC	3 cut(s)	16, 671, 719
TseI	GCWGC	3 cut(s)	308, 500, 980
Tsp45I	GTSAC	3 cut(s)	16, 671, 719
TspDTI	ATGAA	1 cut(s)	693
TspMI	CCCGGG	1 cut(s)	1170
TspRI	CASTG	2 cut(s)	990, 1084
VpaK11BI	GGWCC	1 cut(s)	235
XapI	RAATTY	3 cut(s)	393, 946, 1282
XmaI	CCCGGG	1 cut(s)	1170
XmnI	GAANNNNTTC	2 cut(s)	956, 972
XspI	CTAG	3 cut(s)	156, 497, 920

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.