AT2G21880

Ras-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0013821
Physical Location & Seq
Reverse (-)
9324633 .. 9326426
1794 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G21880.3

Sequence Viewer

Length: 639 bp
ATGGATTCTTTGAAGAATAGAACATTGCTTAAGGTCATTGTTCTTGGAGATAGCGGGGTAGGCAAAACTTCATTGATGAATCAATATGTGTACAAGAAATTTAACAAGCAATATAAGGCTACGATCGGAGCAGATTTCGTCACCAAAGAGCTTCATATAGATGAAAAATCTGTCACTTTACAGATATGGGATACCGCTGGACAAGAGAGATTTCAAAGTCTAGGGGCCGCGTTCTATAGAGGTGCTGATTGTTGCGTTCTTGTCTACGACGTGAACAATCTCAAATCTTTTGAAACTCTCAATAACTGGCACACAGAGTTCCTCAAACAGGCAAATCCTATGGAACCGGAGACATTTCCCTTTGTTTTGATCGGGAACAAGACCGATGTAGATGGCGGAAACAGCCGAGTTGTTTCAAATAAGAGAGCCATCGAGTGGTGTGGCTCAAAGGGAAACATACCGTACCATGAAACCTCTGCGAAGGAAGATACCAATATCGATGAAGCTTTTTTGAGTGTTGCACACATTGCTCTCTCTAATGAACGTAAACAAAGCAATGACATATATCCTAGAGGCCAGTATCATGACTCTGTTACGGATATTATTGATCCAGATCAGTCAAGAGGTTGTGCTTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04137 ko04138 ko04140 ko04144 ko04145 ko05132 ko05146 ko05152 map04137 map04138 map04140 map04144 map04145 map05132 map05146 map05152
Pfam Domains
Protein Families
Ras

Protein Analysis

212

Amino Acids

23.83

Weight (kDa)

5.75

Isoelectric Point (pI)

36.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Roc PF08477 1 - 104 2e-24 Ras of Complex, Roc, domain of DAPkinase
Ras PF00071 2 - 150 1.6e-46 Ras family
Arf PF00025 14 - 111 5e-07 ADP-ribosylation factor family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013821)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G21880 AT2G21880 AT2G21880 AT2G21880
fragaria_vesca FvH4_1g22870 FvH4_1g22870
malus_domestica MD00G1156800.v1.1
prunus_persica Prupe.6G169600_v2.0.a1 Prupe.6G169600_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0117211
rosa_laevigata RLG00000018335
rosa_roxburghii Rroxscaffold_2G00126640
rosa_rugosa Rorug02G0211100 Rorug02G0211200
rosa_samantha Rh2AG267000 Rh2DG293300
rosa_wichuraiana Rw2G021060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 435
AccI GTMKAC 1 cut(s) 264
AccII CGCG 1 cut(s) 230
AciI CCGC 4 cut(s) 54, 195, 228, 396
AclWI GGATC 1 cut(s) 602
AcsI RAATTY 1 cut(s) 98
AfaI GTAC 2 cut(s) 92, 464
AfiI CCNNNNNNNGG 2 cut(s) 328, 435
AflII CTTAAG 1 cut(s) 29
AgsI TTSAA 4 cut(s) 13, 215, 293, 417
AjiI CACGTC 1 cut(s) 271
AluBI AGCT 2 cut(s) 151, 506
AluI AGCT 2 cut(s) 151, 506
Alw26I GTCTC 1 cut(s) 344
AlwI GGATC 1 cut(s) 602
AoxI GGCC 2 cut(s) 225, 574
ApoI RAATTY 1 cut(s) 98
AspS9I GGNCC 1 cut(s) 225
AsuHPI GGTGA 1 cut(s) 133
BccI CCATC 2 cut(s) 386, 437
BciVI GTATCC 1 cut(s) 184
BcoDI GTCTC 1 cut(s) 344
BfaI CTAG 2 cut(s) 221, 570
BfmI CTRYAG 1 cut(s) 235
BfrI CTTAAG 1 cut(s) 29
BfuI GTATCC 1 cut(s) 184
BisI GCNGC 1 cut(s) 228
BlsI GCNGC 1 cut(s) 229
BmgBI CACGTC 1 cut(s) 271
BmgT120I GGNCC 1 cut(s) 225
BmiI GGNNCC 2 cut(s) 226, 345
Bsa29I ATCGAT 1 cut(s) 498
BsaBI GATNNNNATC 1 cut(s) 612
BsaWI WCCGGW 1 cut(s) 346
Bsc4I CCNNNNNNNGG 2 cut(s) 328, 435
Bse1I ACTGG 2 cut(s) 311, 577
Bse3DI GCAATG 3 cut(s) 23, 525, 562
Bse8I GATNNNNATC 1 cut(s) 612
BseCI ATCGAT 1 cut(s) 498
BseJI GATNNNNATC 1 cut(s) 612
BseLI CCNNNNNNNGG 2 cut(s) 328, 435
BseMI GCAATG 3 cut(s) 23, 525, 562
BseNI ACTGG 2 cut(s) 311, 577
Bsh1236I CGCG 1 cut(s) 230
Bsh1285I CGRYCG 1 cut(s) 126
BshFI GGCC 2 cut(s) 227, 576
BshVI ATCGAT 1 cut(s) 498
BsiEI CGRYCG 1 cut(s) 126
BsiSI CCGG 1 cut(s) 347
BslI CCNNNNNNNGG 2 cut(s) 328, 435
BsmAI GTCTC 1 cut(s) 344
BsnI GGCC 2 cut(s) 227, 576
Bsp1407I TGTACA 1 cut(s) 90
Bsp143I GATC 4 cut(s) 123, 369, 607, 613
BspACI CCGC 4 cut(s) 54, 195, 228, 396
BspANI GGCC 2 cut(s) 227, 576
BspDI ATCGAT 1 cut(s) 498
BspFNI CGCG 1 cut(s) 230
BspHI TCATGA 1 cut(s) 583
BspLI GGNNCC 2 cut(s) 226, 345
BspPI GGATC 1 cut(s) 602
BspTI CTTAAG 1 cut(s) 29
BsrDI GCAATG 3 cut(s) 23, 525, 562
BsrGI TGTACA 1 cut(s) 90
BsrI ACTGG 2 cut(s) 311, 577
BssMI GATC 4 cut(s) 123, 369, 607, 613
Bst4CI ACNGT 1 cut(s) 462
BstAFI CTTAAG 1 cut(s) 29
BstAPI GCANNNNNTGC 1 cut(s) 527
BstAUI TGTACA 1 cut(s) 90
BstC8I GCNNGC 1 cut(s) 634
BstENI CCTNNNNNAGG 1 cut(s) 326
BstFNI CGCG 1 cut(s) 230
BstKTI GATC 4 cut(s) 126, 372, 610, 616
BstMAI GTCTC 1 cut(s) 344
BstMBI GATC 4 cut(s) 123, 369, 607, 613
BstMCI CGRYCG 1 cut(s) 126
BstMWI GCNNNNNNNGC 3 cut(s) 60, 402, 527
BstSFI CTRYAG 1 cut(s) 235
BstUI CGCG 1 cut(s) 230
Bsu15I ATCGAT 1 cut(s) 498
BsuI GTATCC 1 cut(s) 184
BsuRI GGCC 2 cut(s) 227, 576
BsuTUI ATCGAT 1 cut(s) 498
BtrI CACGTC 1 cut(s) 271
Cac8I GCNNGC 1 cut(s) 634
CciI TCATGA 1 cut(s) 583
Cfr13I GGNCC 1 cut(s) 225
ClaI ATCGAT 1 cut(s) 498
Csp6I GTAC 2 cut(s) 91, 463
CviAII CATG 2 cut(s) 467, 584
CviJI RGCY 8 cut(s) 119, 151, 227, 405, 428, 444, 506, 576
CviKI_1 RGCY 8 cut(s) 119, 151, 227, 405, 428, 444, 506, 576
CviQI GTAC 2 cut(s) 91, 463
DpnI GATC 4 cut(s) 125, 371, 609, 615
DpnII GATC 4 cut(s) 123, 369, 607, 613
EciI GGCGGA 1 cut(s) 411
EcoNI CCTNNNNNAGG 1 cut(s) 326
FaeI CATG 2 cut(s) 470, 587
FatI CATG 2 cut(s) 466, 583
FauI CCCGC 1 cut(s) 47
FblI GTMKAC 1 cut(s) 264
Fnu4HI GCNGC 1 cut(s) 228
Fsp4HI GCNGC 1 cut(s) 228
FspBI CTAG 2 cut(s) 221, 570
GluI GCNGC 1 cut(s) 228
HaeIII GGCC 2 cut(s) 227, 576
HapII CCGG 1 cut(s) 347
Hin1II CATG 2 cut(s) 470, 587
HindIII AAGCTT 1 cut(s) 504
HinfI GANTC 3 cut(s) 5, 79, 587
HpaII CCGG 1 cut(s) 347
HphI GGTGA 1 cut(s) 133
Hpy166II GTNNAC 4 cut(s) 91, 265, 274, 548
Hpy188I TCNGA 1 cut(s) 128
Hpy188III TCNNGA 4 cut(s) 373, 584, 611, 621
Hpy8I GTNNAC 4 cut(s) 91, 265, 274, 548
Hpy99I CGWCG 1 cut(s) 272
HpyAV CCTTC 1 cut(s) 475
HpyCH4III ACNGT 1 cut(s) 462
HpyCH4IV ACGT 2 cut(s) 270, 544
HpyCH4V TGCA 1 cut(s) 521
HpyF10VI GCNNNNNNNGC 3 cut(s) 60, 402, 527
HpySE526I ACGT 2 cut(s) 270, 544
Hsp92II CATG 2 cut(s) 470, 587
Kzo9I GATC 4 cut(s) 123, 369, 607, 613
LmnI GCTCC 1 cut(s) 128
LpnPI CCDG 6 cut(s) 183, 292, 314, 360, 590, 624
MaeI CTAG 2 cut(s) 221, 570
MaeII ACGT 2 cut(s) 270, 544
MaeIII GTNAC 3 cut(s) 139, 172, 592
MalI GATC 4 cut(s) 125, 371, 609, 615
MboI GATC 4 cut(s) 123, 369, 607, 613
MboII GAAGA 2 cut(s) 25, 497
MluCI AATT 1 cut(s) 98
MlyI GAGTC 1 cut(s) 581
MnlI CCTC 5 cut(s) 233, 332, 484, 566, 617
MseI TTAA 2 cut(s) 30, 102
MslI CAYNNNNRTG 1 cut(s) 159
MspA1I CMGCKG 1 cut(s) 197
MspCI CTTAAG 1 cut(s) 29
MspI CCGG 1 cut(s) 347
MvnI CGCG 1 cut(s) 230
MwoI GCNNNNNNNGC 3 cut(s) 60, 402, 527
NdeII GATC 4 cut(s) 123, 369, 607, 613
NlaIII CATG 2 cut(s) 470, 587
NlaIV GGNNCC 2 cut(s) 226, 345
NmeAIII GCCGAG 1 cut(s) 431
NmuCI GTSAC 2 cut(s) 139, 172
PagI TCATGA 1 cut(s) 583
PfeI GAWTC 2 cut(s) 5, 79
PflMI CCANNNNNTGG 1 cut(s) 435
PkrI GCNGC 1 cut(s) 229
Ple19I CGATCG 1 cut(s) 126
PleI GAGTC 1 cut(s) 581
PpsI GAGTC 1 cut(s) 581
PspN4I GGNNCC 2 cut(s) 226, 345
PspPI GGNCC 1 cut(s) 225
PvuI CGATCG 1 cut(s) 126
RsaI GTAC 2 cut(s) 92, 464
RsaNI GTAC 2 cut(s) 91, 463
RseI CAYNNNNRTG 1 cut(s) 159
SaqAI TTAA 2 cut(s) 30, 102
SatI GCNGC 1 cut(s) 228
Sau3AI GATC 4 cut(s) 123, 369, 607, 613
Sau96I GGNCC 1 cut(s) 225
SchI GAGTC 1 cut(s) 581
SetI ASST 8 cut(s) 36, 153, 244, 273, 476, 508, 547, 628
SfcI CTRYAG 1 cut(s) 235
SmiMI CAYNNNNRTG 1 cut(s) 159
SmlI CTYRAG 1 cut(s) 29
SmoI CTYRAG 1 cut(s) 29
Sse9I AATT 1 cut(s) 98
SsiI CCGC 4 cut(s) 54, 195, 228, 396
SspMI CTAG 2 cut(s) 221, 570
TaaI ACNGT 1 cut(s) 462
TaiI ACGT 2 cut(s) 273, 547
TaqI TCGA 2 cut(s) 432, 498
TaqII GACCGA 1 cut(s) 398
TasI AATT 1 cut(s) 98
TatI WGTACW 1 cut(s) 90
TauI GCSGC 1 cut(s) 230
TfiI GAWTC 2 cut(s) 5, 79
Tru1I TTAA 2 cut(s) 30, 102
Tru9I TTAA 2 cut(s) 30, 102
TseFI GTSAC 2 cut(s) 139, 172
Tsp45I GTSAC 2 cut(s) 139, 172
TspDTI ATGAA 7 cut(s) 60, 92, 143, 177, 483, 516, 555
TspGWI ACGGA 1 cut(s) 611
Van91I CCANNNNNTGG 1 cut(s) 435
Vha464I CTTAAG 1 cut(s) 29
XagI CCTNNNNNAGG 1 cut(s) 326
XapI RAATTY 1 cut(s) 98
XmiI GTMKAC 1 cut(s) 264
XspI CTAG 2 cut(s) 221, 570
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.