Prupe.6G169600_v2.0.a1

Ras-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0013821
Physical Location & Seq
Reverse (-)
17493642 .. 17495657
2016 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G169600.2

Sequence Viewer

Length: 624 bp
ATGGATATTTCTATGAAAAGAAGAACTCTGCTTAAGGTCATTGTCCTTGGAGATAGTGGGGTGGGAAAGACGTCTTTGATGAATCAATATGTGTACAAGAAGTTCCATCGACAGTATAAAGCTACGATCGGTGCTGATTTCGTCACGAAGGAACTTCAGATTGATGACAAGTTGGTGACTTTGCAAGTTTGGGACACAGCGGGGCAAGAAAGATTTCATAGTCTTGGAGCTGCGTTTTATAGGGGAGCCGATTGCTGTGTTCTTGTGTATGATGTAAATGTGAGCAAATCATTTGAAACACTTCAGAACTGGCATGAAGAGTTTCTCAAACAGGCTGATCCGACTGACCCCGAGGCATTTCCCTTCGTATTACTTGGAAACAAAATCGATGTAGATGGTGGAAACAGCCGAGCGGTTTCTGAGAAGAAGGCTAGAGAGTGGTGTGCTTCAAAGGGAAACATACCCTACTTTGAGACCTCTGCGAAAGAGGATTATAATGTCGACGAAGCGTTTCTATGCATTGCGAAAACAGGAATGATCAATGAACATGAACAAGACATTTACTTCCAAGGTATTTCAGAAACTGTTTCAGAAGCAGAGCAAAGAGGAAGATGTGCATGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04137 ko04138 ko04140 ko04144 ko04145 ko05132 ko05146 ko05152 map04137 map04138 map04140 map04144 map04145 map05132 map05146 map05152
Pfam Domains
Protein Families
Ras

Protein Analysis

208

Amino Acids

23.42

Weight (kDa)

5.31

Isoelectric Point (pI)

26.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013821)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G21880 AT2G21880 AT2G21880 AT2G21880
fragaria_vesca FvH4_1g22870 FvH4_1g22870
malus_domestica MD00G1156800.v1.1
prunus_persica Prupe.6G169600_v2.0.a1 Prupe.6G169600_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0117211
rosa_laevigata RLG00000018335
rosa_roxburghii Rroxscaffold_2G00126640
rosa_rugosa Rorug02G0211100 Rorug02G0211200
rosa_samantha Rh2AG267000 Rh2DG293300
rosa_wichuraiana Rw2G021060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 495
AatII GACGTC 1 cut(s) 74
AccBSI CCGCTC 1 cut(s) 413
AccI GTMKAC 1 cut(s) 501
AciI CCGC 2 cut(s) 200, 413
AclWI GGATC 1 cut(s) 332
AcuI CTGAAG 2 cut(s) 140, 287
AcyI GRCGYC 1 cut(s) 71
AfaI GTAC 1 cut(s) 95
AflII CTTAAG 1 cut(s) 32
AgsI TTSAA 2 cut(s) 296, 450
AluBI AGCT 2 cut(s) 122, 230
AluI AGCT 2 cut(s) 122, 230
Alw26I GTCTC 1 cut(s) 467
AlwI GGATC 1 cut(s) 332
AlwNI CAGNNNCTG 1 cut(s) 584
Ama87I CYCGRG 1 cut(s) 350
ApeKI GCWGC 1 cut(s) 230
Asp700I GAANNNNTTC 4 cut(s) 213, 300, 321, 510
AsuHPI GGTGA 1 cut(s) 187
AvaI CYCGRG 1 cut(s) 350
BbvI GCAGC 1 cut(s) 217
BccI CCATC 2 cut(s) 114, 389
BclI TGATCA 1 cut(s) 537
BcoDI GTCTC 1 cut(s) 467
BfaI CTAG 1 cut(s) 432
BfrI CTTAAG 1 cut(s) 32
BisI GCNGC 1 cut(s) 231
BlsI GCNGC 1 cut(s) 232
BmeT110I CYCGRG 1 cut(s) 350
BmiI GGNNCC 1 cut(s) 247
Bsa29I ATCGAT 1 cut(s) 387
BsaHI GRCGYC 1 cut(s) 71
BsaI GGTCTC 1 cut(s) 467
BsaJI CCNNGG 3 cut(s) 46, 351, 568
Bse1I ACTGG 1 cut(s) 314
Bse3DI GCAATG 1 cut(s) 519
BseCI ATCGAT 1 cut(s) 387
BseDI CCNNGG 3 cut(s) 46, 351, 568
BseMI GCAATG 1 cut(s) 519
BseMII CTCAG 1 cut(s) 411
BseNI ACTGG 1 cut(s) 314
BseXI GCAGC 1 cut(s) 217
Bsh1285I CGRYCG 1 cut(s) 129
BshVI ATCGAT 1 cut(s) 387
BsiEI CGRYCG 1 cut(s) 129
BsiHKCI CYCGRG 1 cut(s) 350
BslFI GGGAC 1 cut(s) 206
BsmAI GTCTC 1 cut(s) 467
BsmFI GGGAC 1 cut(s) 206
Bso31I GGTCTC 1 cut(s) 467
BsoBI CYCGRG 1 cut(s) 350
Bsp1407I TGTACA 1 cut(s) 93
Bsp143I GATC 3 cut(s) 126, 337, 537
BspACI CCGC 2 cut(s) 200, 413
BspCNI CTCAG 1 cut(s) 412
BspDI ATCGAT 1 cut(s) 387
BspLI GGNNCC 1 cut(s) 247
BspPI GGATC 1 cut(s) 332
BspTI CTTAAG 1 cut(s) 32
BspTNI GGTCTC 1 cut(s) 467
BsrBI CCGCTC 1 cut(s) 413
BsrDI GCAATG 1 cut(s) 519
BsrGI TGTACA 1 cut(s) 93
BsrI ACTGG 1 cut(s) 314
BssECI CCNNGG 3 cut(s) 46, 351, 568
BssMI GATC 3 cut(s) 126, 337, 537
BssNI GRCGYC 1 cut(s) 71
BssT1I CCWWGG 2 cut(s) 46, 568
Bst4CI ACNGT 2 cut(s) 114, 586
Bst6I CTCTTC 1 cut(s) 312
BstACI GRCGYC 1 cut(s) 71
BstAFI CTTAAG 1 cut(s) 32
BstAUI TGTACA 1 cut(s) 93
BstC8I GCNNGC 1 cut(s) 619
BstDEI CTNAG 1 cut(s) 420
BstKTI GATC 3 cut(s) 129, 340, 540
BstMAI GTCTC 1 cut(s) 467
BstMBI GATC 3 cut(s) 126, 337, 537
BstMCI CGRYCG 1 cut(s) 129
BstNSI RCATGY 1 cut(s) 621
BstV1I GCAGC 1 cut(s) 217
Bsu15I ATCGAT 1 cut(s) 387
BsuTUI ATCGAT 1 cut(s) 387
Cac8I GCNNGC 1 cut(s) 619
CaiI CAGNNNCTG 1 cut(s) 584
ClaI ATCGAT 1 cut(s) 387
Csp6I GTAC 1 cut(s) 94
CviAII CATG 3 cut(s) 314, 548, 618
CviJI RGCY 6 cut(s) 122, 230, 248, 335, 408, 431
CviKI_1 RGCY 6 cut(s) 122, 230, 248, 335, 408, 431
CviQI GTAC 1 cut(s) 94
DdeI CTNAG 1 cut(s) 420
DpnI GATC 3 cut(s) 128, 339, 539
DpnII GATC 3 cut(s) 126, 337, 537
Eam1104I CTCTTC 1 cut(s) 312
EarI CTCTTC 1 cut(s) 312
Eco130I CCWWGG 2 cut(s) 46, 568
Eco31I GGTCTC 1 cut(s) 467
Eco57I CTGAAG 2 cut(s) 140, 287
Eco88I CYCGRG 1 cut(s) 350
EcoT14I CCWWGG 2 cut(s) 46, 568
EcoT22I ATGCAT 1 cut(s) 521
ErhI CCWWGG 2 cut(s) 46, 568
FaeI CATG 3 cut(s) 317, 551, 621
FaqI GGGAC 1 cut(s) 206
FatI CATG 3 cut(s) 313, 547, 617
FauI CCCGC 1 cut(s) 193
FbaI TGATCA 1 cut(s) 537
FblI GTMKAC 1 cut(s) 501
Fnu4HI GCNGC 1 cut(s) 231
Fsp4HI GCNGC 1 cut(s) 231
FspBI CTAG 1 cut(s) 432
GluI GCNGC 1 cut(s) 231
Hin1I GRCGYC 1 cut(s) 71
Hin1II CATG 3 cut(s) 317, 551, 621
HincII GTYRAC 1 cut(s) 502
HindII GTYRAC 1 cut(s) 502
HinfI GANTC 1 cut(s) 82
HphI GGTGA 1 cut(s) 187
Hpy166II GTNNAC 2 cut(s) 94, 502
Hpy188I TCNGA 6 cut(s) 159, 306, 342, 421, 580, 592
Hpy188III TCNNGA 1 cut(s) 145
Hpy8I GTNNAC 2 cut(s) 94, 502
Hpy99I CGWCG 1 cut(s) 506
HpyAV CCTTC 3 cut(s) 142, 373, 421
HpyCH4III ACNGT 2 cut(s) 114, 586
HpyCH4IV ACGT 1 cut(s) 71
HpyCH4V TGCA 3 cut(s) 184, 519, 617
HpyF3I CTNAG 1 cut(s) 420
HpySE526I ACGT 1 cut(s) 71
Hsp92I GRCGYC 1 cut(s) 71
Hsp92II CATG 3 cut(s) 317, 551, 621
Ksp22I TGATCA 1 cut(s) 537
Kzo9I GATC 3 cut(s) 126, 337, 537
LmnI GCTCC 2 cut(s) 227, 245
LpnPI CCDG 3 cut(s) 295, 317, 516
Lsp1109I GCAGC 1 cut(s) 217
MaeI CTAG 1 cut(s) 432
MaeII ACGT 1 cut(s) 71
MaeIII GTNAC 2 cut(s) 142, 175
MalI GATC 3 cut(s) 128, 339, 539
MbiI CCGCTC 1 cut(s) 413
MboI GATC 3 cut(s) 126, 337, 537
MboII GAAGA 4 cut(s) 33, 329, 436, 621
MmeI TCCRAC 1 cut(s) 365
MnlI CCTC 4 cut(s) 346, 481, 487, 599
Mph1103I ATGCAT 1 cut(s) 521
MroXI GAANNNNTTC 4 cut(s) 213, 300, 321, 510
MseI TTAA 1 cut(s) 33
MspA1I CMGCKG 1 cut(s) 200
MspCI CTTAAG 1 cut(s) 32
NdeII GATC 3 cut(s) 126, 337, 537
NlaIII CATG 3 cut(s) 317, 551, 621
NlaIV GGNNCC 1 cut(s) 247
NmeAIII GCCGAG 1 cut(s) 434
NmuCI GTSAC 2 cut(s) 142, 175
NsiI ATGCAT 1 cut(s) 521
NspI RCATGY 1 cut(s) 621
PaeI GCATGC 1 cut(s) 621
PdmI GAANNNNTTC 4 cut(s) 213, 300, 321, 510
PfeI GAWTC 1 cut(s) 82
PkrI GCNGC 1 cut(s) 232
Ple19I CGATCG 1 cut(s) 129
PsiI TTATAA 1 cut(s) 495
PspN4I GGNNCC 1 cut(s) 247
PsrI GAACNNNNNNTAC 2 cut(s) 86, 118
PstNI CAGNNNCTG 1 cut(s) 584
PvuI CGATCG 1 cut(s) 129
RsaI GTAC 1 cut(s) 95
RsaNI GTAC 1 cut(s) 94
SalI GTCGAC 1 cut(s) 500
SaqAI TTAA 1 cut(s) 33
SatI GCNGC 1 cut(s) 231
Sau3AI GATC 3 cut(s) 126, 337, 537
SetI ASST 6 cut(s) 39, 74, 124, 232, 479, 574
SmlI CTYRAG 1 cut(s) 32
SmoI CTYRAG 1 cut(s) 32
SphI GCATGC 1 cut(s) 621
SsiI CCGC 2 cut(s) 200, 413
SspMI CTAG 1 cut(s) 432
StyI CCWWGG 2 cut(s) 46, 568
TaaI ACNGT 2 cut(s) 114, 586
TaiI ACGT 1 cut(s) 74
TaqI TCGA 3 cut(s) 109, 387, 501
TatI WGTACW 1 cut(s) 93
TfiI GAWTC 1 cut(s) 82
Tru1I TTAA 1 cut(s) 33
Tru9I TTAA 1 cut(s) 33
TseFI GTSAC 2 cut(s) 142, 175
TseI GCWGC 1 cut(s) 230
Tsp45I GTSAC 2 cut(s) 142, 175
TspDTI ATGAA 6 cut(s) 29, 95, 206, 330, 558, 564
Vha464I CTTAAG 1 cut(s) 32
XceI RCATGY 1 cut(s) 621
XmiI GTMKAC 1 cut(s) 501
XmnI GAANNNNTTC 4 cut(s) 213, 300, 321, 510
XspI CTAG 1 cut(s) 432
ZraI GACGTC 1 cut(s) 72
Zsp2I ATGCAT 1 cut(s) 521
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.