AT2G24000

Belongs to the peptidase S10 family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Forward (+)
10209421 .. 10214042
4622 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G24000.2

Sequence Viewer

Length: 1395 bp
ATGGCAAGAACCCACTTACTCTTTCTTCTATTTGTGCTCTTATCATTAGCAACATCATCAACATCAACAAAAGAGCAAGAGGAGGACAGGATCAAAGCACTACCAGGGCAACCAAAAGTAGGATTCTCACAATTTTCGGGTTACGTGACAGTGAACGAGTCACATGGCCGATCACTCTTCTACTGGCTCACCGAGTCATCTTCTCATTCTCCTCACACCAAACCACTTCTTCTTTGGCTCAATGGAGGACCAGGCTGCTCGTCGATTGCTTATGGAGCTTCGGAGGAAATTGGACCATTTCGGATCAGCAAAACCGGTTGCAATCTTTATCTCAACAACTTTTCTTGGAACACAGAGGCAAACCTTTTATTTCTTGAATCGCCTGTTGGTGTTGGATTTTCATATACTAACACAAGCTCGGATTTTGAAGAATCCGGAGACGAACGTACAGCTCAGGAAAATTTGATATTTCTTATAAGTTGGATGTCAAGATTTCCTCAGTACCGGTATAGAGATTTCTACATTGTTGGTGAAAGCTACGCCGGTCATTATGTTCCTCAGCTCGCCCAAAAAATTCATGAGTACAACAACGCCTACAAAAATCCAGTAATCAATCTTAAAGGTTTCATGGTTGGTAACCCAGAGATGGACAAAAACAACGACAGACTAGGGACGATAACGTATTGGTGGTCTCACGCGATGATCTCGGACGCTTCCTACAATCGCATCCTCAAAAACTGTGATTTTACAGCGGATAGATTCTCCAAAGAATGCGATTCCGCCATTTATGTCGCTGCTGCCGACTTTGGCGACATCGATCAGTACAGCATCTACACACCCAAGTGTGTACCACCACAAGACCAAACGAACCAGACCAAGTTTGAGCAGATGATGCAAATGCACACAACTAAAAGGTTTTTAGAAGATCAGTATGACCCTTGTACCGAAAACTATGCCGAGATATATTATAACCGTCCTGAGGTACAACGAGCTATGCATGCTAACCACACTGCCATTCCATATAAGTGGACTGCTTGCAGTGACTCTGTCTTTAATAACTGGAATTGGAGAGATTCCGACAATTCAATGTTACCGATATATAAGGAACTCATTGCTGCTGGTCTAAGAATCTGGGTCTACAGTGGTGATACAGATTCGGTAATTCCAGTGACAGCGACTCGATATTCCCTTGGCAAACTGAATCTTCGAGTGAAAACTCGCTGGTACCCTTGGTACTCCGGAAACCAGGTAGGAGGACGAACAGAAGTATACGAGGGGCTTACCTTTGTGACGGTAAGAGGGGCGGGGCACGAGGTGCCATTCTTCCAACCGCAAAGTGCGCTTATTCTTTTAAGATCATTCTTGGCTGGAAATGAGCTTTCAAGATCTTATTAG

Protein Analysis

464

Amino Acids

53.1

Weight (kDa)

5.92

Isoelectric Point (pI)

42.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S10 PF00450 35 - 117 2.4e-30 Serine carboxypeptidase
Peptidase_S10 PF00450 119 - 393 5.3e-75 Serine carboxypeptidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 476, 969
Acc65I GGTACC 1 cut(s) 1224
AccB1I GGYRCC 2 cut(s) 1224, 1315
AccI GTMKAC 2 cut(s) 1137, 1269
AccII CGCG 1 cut(s) 698
AccIII TCCGGA 2 cut(s) 434, 1238
AciI CCGC 4 cut(s) 752, 780, 1304, 1331
AclWI GGATC 2 cut(s) 98, 311
AcoI YGGCCR 1 cut(s) 166
AcsI RAATTY 2 cut(s) 460, 573
AdeI CACNNNGTG 1 cut(s) 1315
AfaI GTAC 9 cut(s) 448, 503, 584, 824, 849, 943, 984, 1226, 1235
AfiI CCNNNNNNNGG 3 cut(s) 119, 646, 979
AgeI ACCGGT 2 cut(s) 314, 504
AgsI TTSAA 4 cut(s) 377, 428, 1086, 1383
AjnI CCWGG 3 cut(s) 103, 250, 1245
AjuI GAANNNNNNNTTGG 2 cut(s) 369, 401
AleI CACNNNNGTG 1 cut(s) 841
AluBI AGCT 7 cut(s) 278, 417, 452, 537, 562, 992, 1378
AluI AGCT 7 cut(s) 278, 417, 452, 537, 562, 992, 1378
Alw21I GWGCWC 1 cut(s) 39
Alw26I GTCTC 2 cut(s) 432, 696
AlwI GGATC 2 cut(s) 98, 311
Aor13HI TCCGGA 2 cut(s) 434, 1238
AoxI GGCC 1 cut(s) 166
ApeKI GCWGC 4 cut(s) 255, 794, 797, 1115
ApoI RAATTY 2 cut(s) 460, 573
AsiGI ACCGGT 2 cut(s) 314, 504
Asp718I GGTACC 1 cut(s) 1224
AspLEI GCGC 1 cut(s) 1342
AspS9I GGNCC 2 cut(s) 248, 293
AsuHPI GGTGA 3 cut(s) 181, 542, 1157
AvaII GGWCC 2 cut(s) 248, 293
AxyI CCTNAGG 1 cut(s) 978
BaeGI GKGCMC 1 cut(s) 1311
BaeI ACNNNNGTAYC 2 cut(s) 925, 958
BanI GGYRCC 2 cut(s) 1224, 1315
BauI CACGAG 1 cut(s) 1310
Bbv12I GWGCWC 1 cut(s) 39
BbvCI CCTCAGC 1 cut(s) 558
BbvI GCAGC 4 cut(s) 242, 781, 784, 1102
BccI CCATC 1 cut(s) 640
BcgI CGANNNNNNTGC 2 cut(s) 935, 969
BciT130I CCWGG 3 cut(s) 105, 252, 1247
BcoDI GTCTC 2 cut(s) 432, 696
BfaI CTAG 1 cut(s) 668
BfmI CTRYAG 1 cut(s) 1138
BglII AGATCT 1 cut(s) 1385
BisI GCNGC 4 cut(s) 256, 795, 798, 1116
BlsI GCNGC 4 cut(s) 257, 796, 799, 1117
Bme1390I CCNGG 3 cut(s) 105, 252, 1247
Bme18I GGWCC 2 cut(s) 248, 293
BmgT120I GGNCC 2 cut(s) 248, 293
BmiI GGNNCC 2 cut(s) 1226, 1317
BmrFI CCNGG 3 cut(s) 105, 252, 1247
BmsI GCATC 3 cut(s) 735, 837, 882
Bpu10I CCTNAGC 2 cut(s) 453, 558
Bsa29I ATCGAT 1 cut(s) 816
BsaAI YACGTR 1 cut(s) 145
BsaI GGTCTC 1 cut(s) 696
BsaJI CCNNGG 3 cut(s) 104, 1189, 1229
BsaWI WCCGGW 4 cut(s) 314, 434, 504, 1238
Bsc4I CCNNNNNNNGG 3 cut(s) 119, 646, 979
Bse118I RCCGGY 3 cut(s) 314, 504, 542
Bse1I ACTGG 4 cut(s) 188, 605, 1064, 1166
Bse21I CCTNAGG 1 cut(s) 978
Bse3DI GCAATG 1 cut(s) 1110
BseAI TCCGGA 2 cut(s) 434, 1238
BseBI CCWGG 3 cut(s) 105, 252, 1247
BseCI ATCGAT 1 cut(s) 816
BseDI CCNNGG 3 cut(s) 104, 1189, 1229
BseGI GGATG 2 cut(s) 489, 726
BseLI CCNNNNNNNGG 3 cut(s) 119, 646, 979
BseMI GCAATG 1 cut(s) 1110
BseMII CTCAG 4 cut(s) 467, 512, 572, 969
BseNI ACTGG 4 cut(s) 188, 605, 1064, 1166
BseRI GAGGAG 2 cut(s) 95, 201
BseSI GKGCMC 1 cut(s) 1311
BseXI GCAGC 4 cut(s) 242, 781, 784, 1102
Bsh1236I CGCG 1 cut(s) 698
BshFI GGCC 1 cut(s) 168
BshNI GGYRCC 2 cut(s) 1224, 1315
BshTI ACCGGT 2 cut(s) 314, 504
BshVI ATCGAT 1 cut(s) 816
BsiHKAI GWGCWC 1 cut(s) 39
BsiSI CCGG 5 cut(s) 315, 435, 505, 543, 1239
BslFI GGGAC 1 cut(s) 685
BslI CCNNNNNNNGG 3 cut(s) 119, 646, 979
BsmAI GTCTC 2 cut(s) 432, 696
BsmBI CGTCTC 1 cut(s) 432
BsmFI GGGAC 1 cut(s) 685
BsmI GAATGC 1 cut(s) 776
BsnI GGCC 1 cut(s) 168
Bso31I GGTCTC 1 cut(s) 696
Bsp1286I GDGCHC 2 cut(s) 39, 1311
Bsp13I TCCGGA 2 cut(s) 434, 1238
Bsp143I GATC 8 cut(s) 90, 170, 303, 702, 817, 925, 1355, 1385
BspACI CCGC 4 cut(s) 752, 780, 1304, 1331
BspANI GGCC 1 cut(s) 168
BspCNI CTCAG 4 cut(s) 466, 511, 571, 970
BspDI ATCGAT 1 cut(s) 816
BspEI TCCGGA 2 cut(s) 434, 1238
BspFNI CGCG 1 cut(s) 698
BspHI TCATGA 1 cut(s) 577
BspLI GGNNCC 2 cut(s) 1226, 1317
BspPI GGATC 2 cut(s) 98, 311
BspT107I GGYRCC 2 cut(s) 1224, 1315
BspTNI GGTCTC 1 cut(s) 696
BsrDI GCAATG 1 cut(s) 1110
BsrFI RCCGGY 3 cut(s) 314, 504, 542
BsrI ACTGG 4 cut(s) 188, 605, 1064, 1166
BssAI RCCGGY 3 cut(s) 314, 504, 542
BssECI CCNNGG 3 cut(s) 104, 1189, 1229
BssMI GATC 8 cut(s) 90, 170, 303, 702, 817, 925, 1355, 1385
BssNAI GTATAC 1 cut(s) 1270
BssSI CACGAG 1 cut(s) 1310
BssT1I CCWWGG 2 cut(s) 1189, 1229
Bst1107I GTATAC 1 cut(s) 1270
Bst2BI CACGAG 1 cut(s) 1310
Bst2UI CCWGG 3 cut(s) 105, 252, 1247
Bst4CI ACNGT 5 cut(s) 151, 740, 974, 1142, 1294
Bst6I CTCTTC 1 cut(s) 182
BstAPI GCANNNNNTGC 2 cut(s) 892, 1315
BstBAI YACGTR 1 cut(s) 145
BstC8I GCNNGC 3 cut(s) 564, 999, 1036
BstDEI CTNAG 5 cut(s) 453, 498, 558, 978, 1124
BstEII GGTNACC 1 cut(s) 635
BstF5I GGATG 2 cut(s) 489, 726
BstFNI CGCG 1 cut(s) 698
BstHHI GCGC 1 cut(s) 1342
BstKTI GATC 8 cut(s) 93, 173, 306, 705, 820, 928, 1358, 1388
BstMAI GTCTC 2 cut(s) 432, 696
BstMBI GATC 8 cut(s) 90, 170, 303, 702, 817, 925, 1355, 1385
BstMWI GCNNNNNNNGC 5 cut(s) 275, 892, 998, 1315, 1339
BstNI CCWGG 3 cut(s) 105, 252, 1247
BstNSI RCATGY 1 cut(s) 1001
BstPI GGTNACC 1 cut(s) 635
BstSCI CCNGG 3 cut(s) 103, 250, 1245
BstSFI CTRYAG 1 cut(s) 1138
BstSLI GKGCMC 1 cut(s) 1311
BstUI CGCG 1 cut(s) 698
BstV1I GCAGC 4 cut(s) 242, 781, 784, 1102
BstX2I RGATCY 1 cut(s) 1385
BstXI CCANNNNNNTGG 1 cut(s) 1026
BstYI RGATCY 1 cut(s) 1385
BstZ17I GTATAC 1 cut(s) 1270
Bsu15I ATCGAT 1 cut(s) 816
Bsu36I CCTNAGG 1 cut(s) 978
BsuRI GGCC 1 cut(s) 168
BsuTUI ATCGAT 1 cut(s) 816
BtgZI GCGATG 1 cut(s) 713
BtsCI GGATG 2 cut(s) 489, 726
BtsI GCAGTG 2 cut(s) 1008, 1045
BtsIMutI CAGTG 5 cut(s) 156, 1008, 1045, 1147, 1173
Cac8I GCNNGC 3 cut(s) 564, 999, 1036
CciI TCATGA 1 cut(s) 577
CfoI GCGC 1 cut(s) 1342
Cfr10I RCCGGY 3 cut(s) 314, 504, 542
Cfr13I GGNCC 2 cut(s) 248, 293
ClaI ATCGAT 1 cut(s) 816
CseI GACGC 1 cut(s) 719
CsiI ACCWGGT 1 cut(s) 1245
Csp6I GTAC 9 cut(s) 447, 502, 583, 823, 848, 942, 983, 1225, 1234
CspAI ACCGGT 2 cut(s) 314, 504
CviAII CATG 4 cut(s) 164, 578, 628, 998
CviQI GTAC 9 cut(s) 447, 502, 583, 823, 848, 942, 983, 1225, 1234
DdeI CTNAG 5 cut(s) 453, 498, 558, 978, 1124
DpnI GATC 8 cut(s) 92, 172, 305, 704, 819, 927, 1357, 1387
DpnII GATC 8 cut(s) 90, 170, 303, 702, 817, 925, 1355, 1385
DraIII CACNNNGTG 1 cut(s) 1315
EaeI YGGCCR 1 cut(s) 166
Eam1104I CTCTTC 1 cut(s) 182
EarI CTCTTC 1 cut(s) 182
EciI GGCGGA 1 cut(s) 769
Eco130I CCWWGG 2 cut(s) 1189, 1229
Eco31I GGTCTC 1 cut(s) 696
Eco47I GGWCC 2 cut(s) 248, 293
Eco81I CCTNAGG 1 cut(s) 978
Eco91I GGTNACC 1 cut(s) 635
EcoO65I GGTNACC 1 cut(s) 635
EcoRII CCWGG 3 cut(s) 103, 250, 1245
EcoT14I CCWWGG 2 cut(s) 1189, 1229
EcoT22I ATGCAT 1 cut(s) 999
ErhI CCWWGG 2 cut(s) 1189, 1229
Esp3I CGTCTC 1 cut(s) 432
FaeI CATG 4 cut(s) 167, 581, 631, 1001
FaqI GGGAC 1 cut(s) 685
FatI CATG 4 cut(s) 163, 577, 627, 997
FauI CCCGC 1 cut(s) 1297
FblI GTMKAC 2 cut(s) 1137, 1269
Fnu4HI GCNGC 4 cut(s) 256, 795, 798, 1116
FokI GGATG 2 cut(s) 496, 713
Fsp4HI GCNGC 4 cut(s) 256, 795, 798, 1116
FspBI CTAG 1 cut(s) 668
GlaI GCGC 1 cut(s) 1341
GluI GCNGC 4 cut(s) 256, 795, 798, 1116
HaeIII GGCC 1 cut(s) 168
HapII CCGG 5 cut(s) 315, 435, 505, 543, 1239
HgaI GACGC 1 cut(s) 719
HhaI GCGC 1 cut(s) 1342
Hin1II CATG 4 cut(s) 167, 581, 631, 1001
Hin6I GCGC 1 cut(s) 1340
HinP1I GCGC 1 cut(s) 1340
HpaII CCGG 5 cut(s) 315, 435, 505, 543, 1239
HphI GGTGA 3 cut(s) 181, 542, 1157
Hpy166II GTNNAC 5 cut(s) 154, 848, 1029, 1138, 1270
Hpy188I TCNGA 5 cut(s) 283, 303, 421, 709, 1078
Hpy188III TCNNGA 8 cut(s) 374, 435, 455, 489, 578, 977, 1239, 1383
Hpy8I GTNNAC 5 cut(s) 154, 848, 1029, 1138, 1270
Hpy99I CGWCG 1 cut(s) 265
HpyCH4III ACNGT 5 cut(s) 151, 740, 974, 1142, 1294
HpyCH4IV ACGT 3 cut(s) 144, 445, 680
HpyCH4V TGCA 5 cut(s) 321, 895, 901, 997, 1038
HpyF10VI GCNNNNNNNGC 5 cut(s) 275, 892, 998, 1315, 1339
HpyF3I CTNAG 5 cut(s) 453, 498, 558, 978, 1124
HpySE526I ACGT 3 cut(s) 144, 445, 680
Hsp92II CATG 4 cut(s) 167, 581, 631, 1001
HspAI GCGC 1 cut(s) 1340
Kpn2I TCCGGA 2 cut(s) 434, 1238
KpnI GGTACC 1 cut(s) 1228
Kzo9I GATC 8 cut(s) 90, 170, 303, 702, 817, 925, 1355, 1385
LmnI GCTCC 1 cut(s) 275
Lsp1109I GCAGC 4 cut(s) 242, 781, 784, 1102
LweI GCATC 3 cut(s) 735, 837, 882
MabI ACCWGGT 1 cut(s) 1245
MaeI CTAG 1 cut(s) 668
MaeII ACGT 3 cut(s) 144, 445, 680
MaeIII GTNAC 8 cut(s) 140, 145, 159, 635, 1040, 1089, 1168, 1288
MalI GATC 8 cut(s) 92, 172, 305, 704, 819, 927, 1357, 1387
MboI GATC 8 cut(s) 90, 170, 303, 702, 817, 925, 1355, 1385
MboII GAAGA 8 cut(s) 17, 169, 192, 221, 440, 935, 1196, 1315
MflI RGATCY 1 cut(s) 1385
MhlI GDGCHC 2 cut(s) 39, 1311
MluCI AATT 7 cut(s) 131, 288, 460, 573, 1063, 1081, 1161
MlyI GAGTC 4 cut(s) 167, 203, 1037, 1171
MmeI TCCRAC 4 cut(s) 373, 461, 1101, 1351
Mph1103I ATGCAT 1 cut(s) 999
MroI TCCGGA 2 cut(s) 434, 1238
MseI TTAA 3 cut(s) 618, 1053, 1352
MslI CAYNNNNRTG 2 cut(s) 841, 1024
MspA1I CMGCKG 1 cut(s) 752
MspI CCGG 5 cut(s) 315, 435, 505, 543, 1239
MspR9I CCNGG 3 cut(s) 105, 252, 1247
Mva1269I GAATGC 1 cut(s) 776
MvaI CCWGG 3 cut(s) 105, 252, 1247
MvnI CGCG 1 cut(s) 698
MwoI GCNNNNNNNGC 5 cut(s) 275, 892, 998, 1315, 1339
NdeII GATC 8 cut(s) 90, 170, 303, 702, 817, 925, 1355, 1385
NlaIII CATG 4 cut(s) 167, 581, 631, 1001
NlaIV GGNNCC 2 cut(s) 1226, 1317
NmeAIII GCCGAG 1 cut(s) 982
NmuCI GTSAC 5 cut(s) 145, 159, 1040, 1168, 1288
NsiI ATGCAT 1 cut(s) 999
NspI RCATGY 1 cut(s) 1001
OliI CACNNNNGTG 1 cut(s) 841
PaeI GCATGC 1 cut(s) 1001
PagI TCATGA 1 cut(s) 577
PcsI WCGNNNNNNNCGW 1 cut(s) 798
PctI GAATGC 1 cut(s) 776
PfeI GAWTC 9 cut(s) 123, 377, 431, 759, 776, 1073, 1128, 1154, 1201
PflFI GACNNNGTC 1 cut(s) 1046
PinAI ACCGGT 2 cut(s) 314, 504
PkrI GCNGC 4 cut(s) 257, 796, 799, 1117
PleI GAGTC 4 cut(s) 166, 202, 1037, 1171
PpsI GAGTC 4 cut(s) 166, 202, 1037, 1171
Ppu21I YACGTR 1 cut(s) 145
PsiI TTATAA 2 cut(s) 476, 969
Psp6I CCWGG 3 cut(s) 103, 250, 1245
PspEI GGTNACC 1 cut(s) 635
PspGI CCWGG 3 cut(s) 103, 250, 1245
PspN4I GGNNCC 2 cut(s) 1226, 1317
PspPI GGNCC 2 cut(s) 248, 293
PsuI RGATCY 1 cut(s) 1385
PsyI GACNNNGTC 1 cut(s) 1046
RsaI GTAC 9 cut(s) 448, 503, 584, 824, 849, 943, 984, 1226, 1235
RsaNI GTAC 9 cut(s) 447, 502, 583, 823, 848, 942, 983, 1225, 1234
RseI CAYNNNNRTG 2 cut(s) 841, 1024
SaqAI TTAA 3 cut(s) 618, 1053, 1352
SatI GCNGC 4 cut(s) 256, 795, 798, 1116
Sau3AI GATC 8 cut(s) 90, 170, 303, 702, 817, 925, 1355, 1385
Sau96I GGNCC 2 cut(s) 248, 293
SchI GAGTC 4 cut(s) 167, 203, 1037, 1171
ScrFI CCNGG 3 cut(s) 105, 252, 1247
SduI GDGCHC 2 cut(s) 39, 1311
SexAI ACCWGGT 1 cut(s) 1245
SfaNI GCATC 3 cut(s) 735, 837, 882
SfcI CTRYAG 1 cut(s) 1138
SinI GGWCC 2 cut(s) 248, 293
SmiMI CAYNNNNRTG 2 cut(s) 841, 1024
SphI GCATGC 1 cut(s) 1001
Sse9I AATT 7 cut(s) 131, 288, 460, 573, 1063, 1081, 1161
SsiI CCGC 4 cut(s) 752, 780, 1304, 1331
SspMI CTAG 1 cut(s) 668
StyD4I CCNGG 3 cut(s) 103, 250, 1245
StyI CCWWGG 2 cut(s) 1189, 1229
TaaI ACNGT 5 cut(s) 151, 740, 974, 1142, 1294
TaiI ACGT 3 cut(s) 147, 448, 683
TaqI TCGA 4 cut(s) 263, 816, 1180, 1207
TasI AATT 7 cut(s) 131, 288, 460, 573, 1063, 1081, 1161
TatI WGTACW 2 cut(s) 582, 822
TfiI GAWTC 9 cut(s) 123, 377, 431, 759, 776, 1073, 1128, 1154, 1201
Tru1I TTAA 3 cut(s) 618, 1053, 1352
Tru9I TTAA 3 cut(s) 618, 1053, 1352
TscAI CASTG 5 cut(s) 156, 1015, 1045, 1147, 1173
TseFI GTSAC 5 cut(s) 145, 159, 1040, 1168, 1288
TseI GCWGC 4 cut(s) 255, 794, 797, 1115
Tsp45I GTSAC 5 cut(s) 145, 159, 1040, 1168, 1288
TspDTI ATGAA 3 cut(s) 390, 566, 616
TspRI CASTG 5 cut(s) 156, 1015, 1045, 1147, 1173
Tth111I GACNNNGTC 1 cut(s) 1046
VpaK11BI GGWCC 2 cut(s) 248, 293
XapI RAATTY 2 cut(s) 460, 573
XceI RCATGY 1 cut(s) 1001
XcmI CCANNNNNNNNNTGG 1 cut(s) 231
XmiI GTMKAC 2 cut(s) 1137, 1269
XspI CTAG 1 cut(s) 668
Zsp2I ATGCAT 1 cut(s) 999
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.