Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0008966

Physical Location & Seq

Genomic Coordinates Forward (+)

91654027 .. 91658538

Gene Structure 4512 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00155280.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGGCGTTAGTACATAGCAACAGTAGCGCTACCATTATGATCTTCTTTTACGCCATATTAGTGTTCATGTTATCTCTAACAACCACCACCATCAATGTGGCTGCGACGGCGAAAGAGCAAGAGCTAGACCGAATCTCAGTGCTGCCGGGACAACCGCCGGTTTCGTTCTCGCAGTATTCTGGTTACGTCACCGTCAACGAGAAACATGGCCGAGCTCTCTTCTACTGGTTCATTGAAGCCACTGCTTCTCCTCAGAACAAACCTCTGGTTCTTTGGCTCAATGGAGGACCAGGTTGTTCATCAGTGGCATATGGAGCATCAGAAGAAATCGGCCCGTTTCGGATTAAGACAACTGGTTCATCTCTTTATCTCAACAAGTATTCATGGAACAGAGAAGCGAATATTCTCTTTCTTGAATCGCCCGCTGGTGTCGGTTTCTCGTATACAAACACAAGCGCTGACCTTAAAGATTCTGGGGACAAAAGGACTGGGCATTATGTTCCTCAGTTGGCAAAGGAAATTGTCAATTACAATAAAGCACATTCCCATCCCATTATCAATCTAAAGGGGTTTATTGTAACCGATAAATCAACCACGCAATGCGATGATGCTGTAGATTATGCCATGAACCATGAATTTGGAGACATTGACCACGGGGACACAGATTCAGTAGTACCAGTGACTGCTACTAGGTTCTCCCTCAGTCATCTCAACCTTACTATCAAAACCCCATGGTATCCATGGTACACAGGAGGGCCAGGTGGGAGGATGGACAGAAGTCTACAATGGCTTGACCTTTGCAACTATACGAGGTGCTGGCCACGAGGTTCCACTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004180 GO:0004185 GO:0005575 GO:0005576 GO:0005615 GO:0006508 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0008238 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010033 GO:0014070 GO:0016787 GO:0017171 GO:0019538 GO:0023052 GO:0030163 GO:0032870 GO:0033993 GO:0042221 GO:0043170 GO:0043401 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0048545 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051716 GO:0065007 GO:0070008 GO:0070011 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S10

Protein Analysis

279

Amino Acids

30.93

Weight (kDa)

6.44

Isoelectric Point (pI)

39.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_S10	PF00450	49 - 163	3.9e-51	Serine carboxypeptidase
Peptidase_S10	PF00450	163 - 211	3.9e-07	Serine carboxypeptidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008966)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24000 AT2G24000 AT2G24010 AT2G24010 AT2G24010 AT2G24010 AT4G30610
fragaria_vesca	FvH4_1g00820
malus_domestica	MD15G1151600.v1.1
prunus_persica	Prupe.7G264200_v2.0.a1 Prupe.7G264200_v2.0.a1 Prupe.7G264200_v2.0.a1
pyrus_communis	pycom15g13550
rosa_chinensis	RchiOBHm_Chr2g0085541
rosa_laevigata	RLG00000015698
rosa_roxburghii	Rroxscaffold_2G00155280
rosa_rugosa	Rorug01G0461300
rosa_samantha	Rh2AG010000 Rh2BG010700 Rh2CG011400 Rh2DG012600
rosa_wichuraiana	Rw2G000900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	443, 781
AciI	CCGC	2 cut(s)	155, 423
AcoI	YGGCCR	2 cut(s)	208, 818
AcsI	RAATTY	1 cut(s)	635
AfaI	GTAC	3 cut(s)	12, 675, 746
AfeI	AGCGCT	2 cut(s)	28, 457
AgsI	TTSAA	2 cut(s)	236, 416
AjnI	CCWGG	2 cut(s)	289, 757
AluBI	AGCT	2 cut(s)	124, 215
AluI	AGCT	2 cut(s)	124, 215
Alw21I	GWGCWC	1 cut(s)	217
Alw26I	GTCTC	1 cut(s)	636
AlwNI	CAGNNNCTG	1 cut(s)	683
Aor51HI	AGCGCT	2 cut(s)	28, 457
AoxI	GGCC	4 cut(s)	208, 331, 755, 818
ApeKI	GCWGC	2 cut(s)	101, 142
ApoI	RAATTY	1 cut(s)	635
AspLEI	GCGC	2 cut(s)	29, 458
AspS9I	GGNCC	3 cut(s)	287, 332, 755
AsuC2I	CCSGG	1 cut(s)	147
AsuHPI	GGTGA	1 cut(s)	181
AvaII	GGWCC	1 cut(s)	287
BalI	TGGCCA	1 cut(s)	820
BanII	GRGCYC	1 cut(s)	217
BauI	CACGAG	1 cut(s)	822
Bbv12I	GWGCWC	1 cut(s)	217
BbvI	GCAGC	2 cut(s)	88, 129
BccI	CCATC	3 cut(s)	98, 555, 763
BceAI	ACGGC	1 cut(s)	123
BciT130I	CCWGG	2 cut(s)	291, 759
BciVI	GTATCC	1 cut(s)	747
BcnI	CCSGG	1 cut(s)	147
BcoDI	GTCTC	1 cut(s)	636
BfaI	CTAG	2 cut(s)	125, 690
BfmI	CTRYAG	1 cut(s)	612
BfoI	RGCGCY	2 cut(s)	30, 459
BfuI	GTATCC	1 cut(s)	747
BisI	GCNGC	2 cut(s)	102, 143
BlsI	GCNGC	2 cut(s)	103, 144
Bme1390I	CCNGG	3 cut(s)	147, 291, 759
Bme18I	GGWCC	1 cut(s)	287
BmgT120I	GGNCC	3 cut(s)	287, 332, 755
BmiI	GGNNCC	1 cut(s)	829
BmrFI	CCNGG	3 cut(s)	147, 291, 759
BmrI	ACTGGG	1 cut(s)	498
BmsI	GCATC	2 cut(s)	326, 598
BmuI	ACTGGG	1 cut(s)	498
BoxI	GACNNNNGTC	1 cut(s)	777
BpuMI	CCSGG	1 cut(s)	147
BsaJI	CCNNGG	3 cut(s)	652, 731, 740
BsaXI	ACNNNNNCTCC	2 cut(s)	232, 262
Bse118I	RCCGGY	1 cut(s)	157
Bse1I	ACTGG	4 cut(s)	230, 358, 493, 677
Bse3DI	GCAATG	1 cut(s)	605
BseBI	CCWGG	2 cut(s)	291, 759
BseDI	CCNNGG	3 cut(s)	652, 731, 740
BseGI	GGATG	2 cut(s)	547, 774
BseMI	GCAATG	1 cut(s)	605
BseMII	CTCAG	4 cut(s)	150, 266, 518, 715
BseNI	ACTGG	4 cut(s)	230, 358, 493, 677
BseRI	GAGGAG	1 cut(s)	240
BseXI	GCAGC	2 cut(s)	88, 129
BshFI	GGCC	4 cut(s)	210, 333, 757, 820
BsiHKAI	GWGCWC	1 cut(s)	217
BsiSI	CCGG	2 cut(s)	146, 158
BslFI	GGGAC	3 cut(s)	162, 491, 671
BsmAI	GTCTC	1 cut(s)	636
BsmFI	GGGAC	3 cut(s)	162, 491, 671
BsnI	GGCC	4 cut(s)	210, 333, 757, 820
Bsp1286I	GDGCHC	1 cut(s)	217
Bsp143I	GATC	1 cut(s)	39
Bsp19I	CCATGG	2 cut(s)	731, 740
BspACI	CCGC	2 cut(s)	155, 423
BspANI	GGCC	4 cut(s)	210, 333, 757, 820
BspCNI	CTCAG	4 cut(s)	149, 265, 517, 714
BspLI	GGNNCC	1 cut(s)	829
BsrDI	GCAATG	1 cut(s)	605
BsrFI	RCCGGY	1 cut(s)	157
BsrI	ACTGG	4 cut(s)	230, 358, 493, 677
BssAI	RCCGGY	1 cut(s)	157
BssECI	CCNNGG	3 cut(s)	652, 731, 740
BssMI	GATC	1 cut(s)	39
BssNAI	GTATAC	1 cut(s)	444
BssSI	CACGAG	1 cut(s)	822
BssT1I	CCWWGG	2 cut(s)	731, 740
Bst1107I	GTATAC	1 cut(s)	444
Bst2BI	CACGAG	1 cut(s)	822
Bst2UI	CCWGG	2 cut(s)	291, 759
Bst4CI	ACNGT	3 cut(s)	23, 193, 835
Bst6I	CTCTTC	1 cut(s)	224
BstC8I	GCNNGC	2 cut(s)	423, 818
BstDEI	CTNAG	4 cut(s)	136, 252, 504, 701
BstDSI	CCRYGG	3 cut(s)	652, 731, 740
BstF5I	GGATG	2 cut(s)	547, 774
BstH2I	RGCGCY	2 cut(s)	30, 459
BstHHI	GCGC	2 cut(s)	29, 458
BstKTI	GATC	1 cut(s)	42
BstMAI	GTCTC	1 cut(s)	636
BstMBI	GATC	1 cut(s)	39
BstMWI	GCNNNNNNNGC	3 cut(s)	24, 107, 314
BstNI	CCWGG	2 cut(s)	291, 759
BstPAI	GACNNNNGTC	1 cut(s)	777
BstSCI	CCNGG	3 cut(s)	145, 289, 757
BstSFI	CTRYAG	1 cut(s)	612
BstV1I	GCAGC	2 cut(s)	88, 129
BstXI	CCANNNNNNTGG	2 cut(s)	97, 638
BstZ17I	GTATAC	1 cut(s)	444
BsuI	GTATCC	1 cut(s)	747
BsuRI	GGCC	4 cut(s)	210, 333, 757, 820
BtgI	CCRYGG	3 cut(s)	652, 731, 740
BtgZI	GCGATG	1 cut(s)	618
BtsCI	GGATG	2 cut(s)	547, 774
BtsI	GCAGTG	1 cut(s)	240
BtsIMutI	CAGTG	5 cut(s)	144, 240, 309, 684, 831
Cac8I	GCNNGC	2 cut(s)	423, 818
CaiI	CAGNNNCTG	1 cut(s)	683
CfoI	GCGC	2 cut(s)	29, 458
Cfr10I	RCCGGY	1 cut(s)	157
Cfr13I	GGNCC	3 cut(s)	287, 332, 755
CsiI	ACCWGGT	1 cut(s)	289
Csp6I	GTAC	3 cut(s)	11, 674, 745
CviAII	CATG	7 cut(s)	67, 206, 384, 625, 632, 732, 741
CviQI	GTAC	3 cut(s)	11, 674, 745
DdeI	CTNAG	4 cut(s)	136, 252, 504, 701
DpnI	GATC	1 cut(s)	41
DpnII	GATC	1 cut(s)	39
EaeI	YGGCCR	2 cut(s)	208, 818
Eam1104I	CTCTTC	1 cut(s)	224
EarI	CTCTTC	1 cut(s)	224
Ecl136II	GAGCTC	1 cut(s)	215
Eco130I	CCWWGG	2 cut(s)	731, 740
Eco24I	GRGCYC	1 cut(s)	217
Eco47I	GGWCC	1 cut(s)	287
Eco47III	AGCGCT	2 cut(s)	28, 457
Eco53kI	GAGCTC	1 cut(s)	215
EcoICRI	GAGCTC	1 cut(s)	215
EcoRII	CCWGG	2 cut(s)	289, 757
EcoT14I	CCWWGG	2 cut(s)	731, 740
EcoT38I	GRGCYC	1 cut(s)	217
ErhI	CCWWGG	2 cut(s)	731, 740
FaeI	CATG	7 cut(s)	70, 209, 387, 628, 635, 735, 744
FaqI	GGGAC	3 cut(s)	162, 491, 671
FatI	CATG	7 cut(s)	66, 205, 383, 624, 631, 731, 740
FauI	CCCGC	1 cut(s)	430
FauNDI	CATATG	1 cut(s)	310
FblI	GTMKAC	2 cut(s)	443, 781
Fnu4HI	GCNGC	2 cut(s)	102, 143
FokI	GGATG	2 cut(s)	534, 781
FriOI	GRGCYC	1 cut(s)	217
Fsp4HI	GCNGC	2 cut(s)	102, 143
FspBI	CTAG	2 cut(s)	125, 690
GlaI	GCGC	2 cut(s)	28, 457
GluI	GCNGC	2 cut(s)	102, 143
HaeII	RGCGCY	2 cut(s)	30, 459
HaeIII	GGCC	4 cut(s)	210, 333, 757, 820
HapII	CCGG	2 cut(s)	146, 158
HhaI	GCGC	2 cut(s)	29, 458
Hin1II	CATG	7 cut(s)	70, 209, 387, 628, 635, 735, 744
Hin6I	GCGC	2 cut(s)	27, 456
HinP1I	GCGC	2 cut(s)	27, 456
HincII	GTYRAC	1 cut(s)	196
HindII	GTYRAC	1 cut(s)	196
HinfI	GANTC	4 cut(s)	132, 416, 470, 665
HpaII	CCGG	2 cut(s)	146, 158
HphI	GGTGA	1 cut(s)	181
Hpy166II	GTNNAC	4 cut(s)	196, 444, 747, 782
Hpy188I	TCNGA	3 cut(s)	255, 322, 342
Hpy188III	TCNNGA	1 cut(s)	413
Hpy8I	GTNNAC	4 cut(s)	196, 444, 747, 782
Hpy99I	CGWCG	1 cut(s)	109
HpyCH4III	ACNGT	3 cut(s)	23, 193, 835
HpyCH4IV	ACGT	1 cut(s)	186
HpyCH4V	TGCA	1 cut(s)	801
HpyF10VI	GCNNNNNNNGC	3 cut(s)	24, 107, 314
HpyF3I	CTNAG	4 cut(s)	136, 252, 504, 701
HpySE526I	ACGT	1 cut(s)	186
Hsp92II	CATG	7 cut(s)	70, 209, 387, 628, 635, 735, 744
HspAI	GCGC	2 cut(s)	27, 456
Kzo9I	GATC	1 cut(s)	39
LmnI	GCTCC	1 cut(s)	314
Lsp1109I	GCAGC	2 cut(s)	88, 129
LweI	GCATC	2 cut(s)	326, 598
MabI	ACCWGGT	1 cut(s)	289
MaeI	CTAG	2 cut(s)	125, 690
MaeII	ACGT	1 cut(s)	186
MaeIII	GTNAC	4 cut(s)	182, 187, 577, 679
MalI	GATC	1 cut(s)	41
MboI	GATC	1 cut(s)	39
MboII	GAAGA	3 cut(s)	34, 211, 335
MhlI	GDGCHC	1 cut(s)	217
MlsI	TGGCCA	1 cut(s)	820
MluCI	AATT	3 cut(s)	519, 526, 635
MluNI	TGGCCA	1 cut(s)	820
MnlI	CCTC	9 cut(s)	261, 273, 278, 513, 710, 746, 759, 804, 818
Mox20I	TGGCCA	1 cut(s)	820
MscI	TGGCCA	1 cut(s)	820
MseI	TTAA	3 cut(s)	345, 465, 838
MslI	CAYNNNNRTG	2 cut(s)	59, 95
Msp20I	TGGCCA	1 cut(s)	820
MspA1I	CMGCKG	1 cut(s)	425
MspI	CCGG	2 cut(s)	146, 158
MspR9I	CCNGG	3 cut(s)	147, 291, 759
MvaI	CCWGG	2 cut(s)	291, 759
MwoI	GCNNNNNNNGC	3 cut(s)	24, 107, 314
NciI	CCSGG	1 cut(s)	147
NcoI	CCATGG	2 cut(s)	731, 740
NdeI	CATATG	1 cut(s)	310
NdeII	GATC	1 cut(s)	39
NlaIII	CATG	7 cut(s)	70, 209, 387, 628, 635, 735, 744
NlaIV	GGNNCC	1 cut(s)	829
NmeAIII	GCCGAG	1 cut(s)	236
NmuCI	GTSAC	2 cut(s)	187, 679
PfeI	GAWTC	4 cut(s)	132, 416, 470, 665
PkrI	GCNGC	2 cut(s)	103, 144
PshAI	GACNNNNGTC	1 cut(s)	777
Psp124BI	GAGCTC	1 cut(s)	217
Psp6I	CCWGG	2 cut(s)	289, 757
PspGI	CCWGG	2 cut(s)	289, 757
PspN4I	GGNNCC	1 cut(s)	829
PspPI	GGNCC	3 cut(s)	287, 332, 755
PstNI	CAGNNNCTG	1 cut(s)	683
RsaI	GTAC	3 cut(s)	12, 675, 746
RsaNI	GTAC	3 cut(s)	11, 674, 745
RseI	CAYNNNNRTG	2 cut(s)	59, 95
SacI	GAGCTC	1 cut(s)	217
SaqAI	TTAA	3 cut(s)	345, 465, 838
SatI	GCNGC	2 cut(s)	102, 143
Sau3AI	GATC	1 cut(s)	39
Sau96I	GGNCC	3 cut(s)	287, 332, 755
ScrFI	CCNGG	3 cut(s)	147, 291, 759
SduI	GDGCHC	1 cut(s)	217
SexAI	ACCWGGT	1 cut(s)	289
SfaNI	GCATC	2 cut(s)	326, 598
SfcI	CTRYAG	1 cut(s)	612
SinI	GGWCC	1 cut(s)	287
SmiMI	CAYNNNNRTG	2 cut(s)	59, 95
Sse9I	AATT	3 cut(s)	519, 526, 635
SsiI	CCGC	2 cut(s)	155, 423
SspI	AATATT	1 cut(s)	403
SspMI	CTAG	2 cut(s)	125, 690
SstI	GAGCTC	1 cut(s)	217
StyD4I	CCNGG	3 cut(s)	145, 289, 757
StyI	CCWWGG	2 cut(s)	731, 740
TaaI	ACNGT	3 cut(s)	23, 193, 835
TaiI	ACGT	1 cut(s)	189
TaqII	GACCGA	1 cut(s)	144
TasI	AATT	3 cut(s)	519, 526, 635
TatI	WGTACW	1 cut(s)	10
TfiI	GAWTC	4 cut(s)	132, 416, 470, 665
Tru1I	TTAA	3 cut(s)	345, 465, 838
Tru9I	TTAA	3 cut(s)	345, 465, 838
TscAI	CASTG	5 cut(s)	144, 247, 309, 684, 838
TseFI	GTSAC	2 cut(s)	187, 679
TseI	GCWGC	2 cut(s)	101, 142
Tsp45I	GTSAC	2 cut(s)	187, 679
TspDTI	ATGAA	7 cut(s)	55, 220, 288, 348, 372, 641, 648
TspRI	CASTG	5 cut(s)	144, 247, 309, 684, 838
VpaK11BI	GGWCC	1 cut(s)	287
XapI	RAATTY	1 cut(s)	635
XcmI	CCANNNNNNNNNTGG	2 cut(s)	94, 738
XmiI	GTMKAC	2 cut(s)	443, 781
XspI	CTAG	2 cut(s)	125, 690

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.