Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0008966

Physical Location & Seq

Genomic Coordinates Reverse (-)

407257 .. 411535

Gene Structure 4279 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g00820.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

ATGTCGTTAGTGCACAGCAACAGTAGCACTGCCATTATGATCTTCTTTTACTCCATATTAGTGTTCATGTTGTCTCTAACAACCACCACCATCAATGTGGCAGCGACGGCGAAAGAGCAAGAGCTAGATCGAATTACAGCGCTGCCGGGACAACCGCCAGTTTCGTTCTCACAGTATTCTGGTTACGTCACCGTCAACAAGAAACATGGCCGTGCTCTCTTCTACTGGTTCACTGAAGCCACTGCTTCTCCTCATAACAAACCTCTCGTTCTTTGGTTCAATGGAGGACCAGGTTGTTCATCAGTGGCTTATGGAGCATCAGAAGAAATTGGCCCATTTCGGATTAATAGAACCGGTTCATCTCTTTATCTCAACAAATATTCATGGAACAGAGAAGCGAATATTCTCTTTCTTGAATCGCCTGCTGGTGTCGGTTTCTCATATACAAACACAAGCGCTGACCTTATTGATTCTGGGGACAAAAGGACAGCTCAGGATGCTCTAACCTTTTTGCTCCAGTGGTTATCAAGATTTCCTCAATACAAATACAGAGAATTCTACATTTCCGGGGAGAGCTATGCAGGGCATTATGTTCCTCAGTTGGCCAAGGAAATCGTCAATTACAATAAAGCACATTCCCATCCCATTATCAATCTGAAGACTCGAATAGCAATGCATGCAAATATTACTAAAATCCCATACAAGTGGACTGCTTGCAGCGATACTCTTATCAAGAATTGGAATGATTCAGAAGATTCCATGCTGCCTACATACAAGGAGCTGATGGCAGCTGGTCTAAAAATCTGGGTTTTCAGCGGGGACACAGATTCAGTAGTACCAGTGACGGCTACTAGATTTTCTCTTAGTCATCTCAACCTTACTATCAAAACCCCTTGGTATCCATGGTACACAGGAGGCCAGGTGGGAGGATGGACAGAAGTCTACCATGGCTTAACCTTTGCAACTATACGAGGTGCCGGCCACGAGGTTCCACTGTTTCAGCCAAAGAGAGCCTTCGTGCTTTTCCAATCATTTTTAGCAGGAAAACAATTGCCAAGACCTAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004180 GO:0004185 GO:0005575 GO:0005576 GO:0005615 GO:0006508 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0008238 GO:0009056 GO:0009057 GO:0009719 GO:0009725 GO:0009741 GO:0009742 GO:0009755 GO:0009987 GO:0010033 GO:0014070 GO:0016787 GO:0017171 GO:0019538 GO:0023052 GO:0030163 GO:0032870 GO:0033993 GO:0042221 GO:0043170 GO:0043401 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0048545 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051716 GO:0065007 GO:0070008 GO:0070011 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S10

Protein Analysis

356

Amino Acids

39.84

Weight (kDa)

9.17

Isoelectric Point (pI)

46.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_S10	PF00450	49 - 221	3.9e-80	Serine carboxypeptidase
Peptidase_S10	PF00450	223 - 347	8.7e-35	Serine carboxypeptidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008966)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24000 AT2G24000 AT2G24010 AT2G24010 AT2G24010 AT2G24010 AT4G30610
fragaria_vesca	FvH4_1g00820
malus_domestica	MD15G1151600.v1.1
prunus_persica	Prupe.7G264200_v2.0.a1 Prupe.7G264200_v2.0.a1 Prupe.7G264200_v2.0.a1
pyrus_communis	pycom15g13550
rosa_chinensis	RchiOBHm_Chr2g0085541
rosa_laevigata	RLG00000015698
rosa_roxburghii	Rroxscaffold_2G00155280
rosa_rugosa	Rorug01G0461300
rosa_samantha	Rh2AG010000 Rh2BG010700 Rh2CG011400 Rh2DG012600
rosa_wichuraiana	Rw2G000900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	974
AccI	GTMKAC	1 cut(s)	942
AciI	CCGC	2 cut(s)	155, 816
AcoI	YGGCCR	3 cut(s)	208, 603, 979
AcsI	RAATTY	1 cut(s)	554
AcuI	CTGAAG	2 cut(s)	255, 677
AfaI	GTAC	2 cut(s)	837, 908
AfeI	AGCGCT	2 cut(s)	141, 457
AgeI	ACCGGT	1 cut(s)	353
AgsI	TTSAA	2 cut(s)	280, 416
AjnI	CCWGG	2 cut(s)	289, 918
AluBI	AGCT	5 cut(s)	124, 491, 576, 781, 791
AluI	AGCT	5 cut(s)	124, 491, 576, 781, 791
Alw21I	GWGCWC	2 cut(s)	15, 217
Alw26I	GTCTC	1 cut(s)	78
Alw44I	GTGCAC	1 cut(s)	11
Aor51HI	AGCGCT	2 cut(s)	141, 457
AoxI	GGCC	5 cut(s)	208, 331, 603, 916, 979
ApaLI	GTGCAC	1 cut(s)	11
ApeKI	GCWGC	5 cut(s)	101, 142, 717, 763, 788
ApoI	RAATTY	1 cut(s)	554
AseI	ATTAAT	1 cut(s)	345
AsiGI	ACCGGT	1 cut(s)	353
Asp700I	GAANNNNTTC	1 cut(s)	355
AspLEI	GCGC	2 cut(s)	142, 458
AspS9I	GGNCC	2 cut(s)	287, 332
AsuC2I	CCSGG	2 cut(s)	147, 568
AsuHPI	GGTGA	1 cut(s)	181
AvaII	GGWCC	1 cut(s)	287
BaeGI	GKGCMC	1 cut(s)	15
BalI	TGGCCA	1 cut(s)	605
BanI	GGYRCC	1 cut(s)	974
BauI	CACGAG	1 cut(s)	983
BbsI	GAAGAC	1 cut(s)	665
Bbv12I	GWGCWC	2 cut(s)	15, 217
BbvI	GCAGC	5 cut(s)	113, 129, 729, 750, 800
BccI	CCATC	4 cut(s)	98, 648, 778, 924
BceAI	ACGGC	3 cut(s)	123, 195, 861
BciT130I	CCWGG	2 cut(s)	291, 920
BciVI	GTATCC	1 cut(s)	909
BcnI	CCSGG	2 cut(s)	147, 568
BcoDI	GTCTC	1 cut(s)	78
BfaI	CTAG	2 cut(s)	125, 852
BfoI	RGCGCY	2 cut(s)	143, 459
BfuI	GTATCC	1 cut(s)	909
BisI	GCNGC	5 cut(s)	102, 143, 718, 764, 789
BlsI	GCNGC	5 cut(s)	103, 144, 719, 765, 790
Bme1390I	CCNGG	4 cut(s)	147, 291, 568, 920
Bme18I	GGWCC	1 cut(s)	287
BmgT120I	GGNCC	2 cut(s)	287, 332
BmiI	GGNNCC	2 cut(s)	976, 990
BmrFI	CCNGG	4 cut(s)	147, 291, 568, 920
BmsI	GCATC	2 cut(s)	326, 487
BoxI	GACNNNNGTC	1 cut(s)	938
BpiI	GAAGAC	1 cut(s)	665
BpmI	CTGGAG	1 cut(s)	500
Bpu10I	CCTNAGC	1 cut(s)	492
BpuMI	CCSGG	2 cut(s)	147, 568
BsaJI	CCNNGG	5 cut(s)	567, 606, 893, 902, 946
BsaWI	WCCGGW	1 cut(s)	353
BsaXI	ACNNNNNCTCC	4 cut(s)	232, 262, 906, 936
Bse118I	RCCGGY	2 cut(s)	353, 977
Bse1I	ACTGG	4 cut(s)	158, 230, 517, 839
Bse3DI	GCAATG	1 cut(s)	678
BseBI	CCWGG	2 cut(s)	291, 920
BseDI	CCNNGG	5 cut(s)	567, 606, 893, 902, 946
BseGI	GGATG	3 cut(s)	502, 640, 935
BseMI	GCAATG	1 cut(s)	678
BseMII	CTCAG	2 cut(s)	506, 611
BseNI	ACTGG	4 cut(s)	158, 230, 517, 839
BseRI	GAGGAG	1 cut(s)	240
BseSI	GKGCMC	1 cut(s)	15
BseXI	GCAGC	5 cut(s)	113, 129, 729, 750, 800
BshFI	GGCC	5 cut(s)	210, 333, 605, 918, 981
BshNI	GGYRCC	1 cut(s)	974
BshTI	ACCGGT	1 cut(s)	353
BsiHKAI	GWGCWC	2 cut(s)	15, 217
BsiSI	CCGG	4 cut(s)	146, 354, 567, 978
BslFI	GGGAC	3 cut(s)	162, 491, 833
BsmAI	GTCTC	1 cut(s)	78
BsmFI	GGGAC	3 cut(s)	162, 491, 833
BsnI	GGCC	5 cut(s)	210, 333, 605, 918, 981
Bsp1286I	GDGCHC	2 cut(s)	15, 217
Bsp143I	GATC	2 cut(s)	39, 127
Bsp19I	CCATGG	2 cut(s)	902, 946
BspACI	CCGC	2 cut(s)	155, 816
BspANI	GGCC	5 cut(s)	210, 333, 605, 918, 981
BspCNI	CTCAG	2 cut(s)	505, 610
BspLI	GGNNCC	2 cut(s)	976, 990
BspT107I	GGYRCC	1 cut(s)	974
BsrDI	GCAATG	1 cut(s)	678
BsrFI	RCCGGY	2 cut(s)	353, 977
BsrI	ACTGG	4 cut(s)	158, 230, 517, 839
BssAI	RCCGGY	2 cut(s)	353, 977
BssECI	CCNNGG	5 cut(s)	567, 606, 893, 902, 946
BssMI	GATC	2 cut(s)	39, 127
BssSI	CACGAG	1 cut(s)	983
BssT1I	CCWWGG	4 cut(s)	606, 893, 902, 946
Bst2BI	CACGAG	1 cut(s)	983
Bst2UI	CCWGG	2 cut(s)	291, 920
Bst4CI	ACNGT	4 cut(s)	23, 174, 193, 996
Bst6I	CTCTTC	1 cut(s)	224
BstAPI	GCANNNNNTGC	1 cut(s)	677
BstC8I	GCNNGC	4 cut(s)	423, 678, 715, 979
BstDEI	CTNAG	3 cut(s)	492, 597, 863
BstDSI	CCRYGG	2 cut(s)	902, 946
BstF5I	GGATG	3 cut(s)	502, 640, 935
BstH2I	RGCGCY	2 cut(s)	143, 459
BstHHI	GCGC	2 cut(s)	142, 458
BstKTI	GATC	2 cut(s)	42, 130
BstMAI	GTCTC	1 cut(s)	78
BstMBI	GATC	2 cut(s)	39, 127
BstMWI	GCNNNNNNNGC	5 cut(s)	24, 107, 314, 497, 677
BstNI	CCWGG	2 cut(s)	291, 920
BstNSI	RCATGY	1 cut(s)	680
BstPAI	GACNNNNGTC	1 cut(s)	938
BstSCI	CCNGG	4 cut(s)	145, 289, 566, 918
BstSLI	GKGCMC	1 cut(s)	15
BstV1I	GCAGC	5 cut(s)	113, 129, 729, 750, 800
BstV2I	GAAGAC	1 cut(s)	665
BstXI	CCANNNNNNTGG	2 cut(s)	97, 705
BsuI	GTATCC	1 cut(s)	909
BsuRI	GGCC	5 cut(s)	210, 333, 605, 918, 981
BtgI	CCRYGG	2 cut(s)	902, 946
BtsCI	GGATG	3 cut(s)	502, 640, 935
BtsI	GCAGTG	2 cut(s)	27, 240
BtsIMutI	CAGTG	7 cut(s)	27, 231, 240, 309, 524, 846, 992
Cac8I	GCNNGC	4 cut(s)	423, 678, 715, 979
CfoI	GCGC	2 cut(s)	142, 458
Cfr10I	RCCGGY	2 cut(s)	353, 977
Cfr13I	GGNCC	2 cut(s)	287, 332
CsiI	ACCWGGT	1 cut(s)	289
Csp6I	GTAC	2 cut(s)	836, 907
CspAI	ACCGGT	1 cut(s)	353
CviAII	CATG	7 cut(s)	67, 206, 384, 677, 760, 903, 947
CviQI	GTAC	2 cut(s)	836, 907
DdeI	CTNAG	3 cut(s)	492, 597, 863
DpnI	GATC	2 cut(s)	41, 129
DpnII	GATC	2 cut(s)	39, 127
EaeI	YGGCCR	3 cut(s)	208, 603, 979
Eam1104I	CTCTTC	1 cut(s)	224
EarI	CTCTTC	1 cut(s)	224
Eco130I	CCWWGG	4 cut(s)	606, 893, 902, 946
Eco47I	GGWCC	1 cut(s)	287
Eco47III	AGCGCT	2 cut(s)	141, 457
Eco57I	CTGAAG	2 cut(s)	255, 677
EcoRI	GAATTC	1 cut(s)	554
EcoRII	CCWGG	2 cut(s)	289, 918
EcoT14I	CCWWGG	4 cut(s)	606, 893, 902, 946
EcoT22I	ATGCAT	1 cut(s)	678
ErhI	CCWWGG	4 cut(s)	606, 893, 902, 946
FaeI	CATG	7 cut(s)	70, 209, 387, 680, 763, 906, 950
FalI	AAGNNNNNCTT	2 cut(s)	998, 1030
FaqI	GGGAC	3 cut(s)	162, 491, 833
FatI	CATG	7 cut(s)	66, 205, 383, 676, 759, 902, 946
FauI	CCCGC	1 cut(s)	809
FblI	GTMKAC	1 cut(s)	942
Fnu4HI	GCNGC	5 cut(s)	102, 143, 718, 764, 789
FokI	GGATG	3 cut(s)	509, 627, 942
Fsp4HI	GCNGC	5 cut(s)	102, 143, 718, 764, 789
FspBI	CTAG	2 cut(s)	125, 852
GlaI	GCGC	2 cut(s)	141, 457
GluI	GCNGC	5 cut(s)	102, 143, 718, 764, 789
GsuI	CTGGAG	1 cut(s)	500
HaeII	RGCGCY	2 cut(s)	143, 459
HaeIII	GGCC	5 cut(s)	210, 333, 605, 918, 981
HapII	CCGG	4 cut(s)	146, 354, 567, 978
HhaI	GCGC	2 cut(s)	142, 458
Hin1II	CATG	7 cut(s)	70, 209, 387, 680, 763, 906, 950
Hin6I	GCGC	2 cut(s)	140, 456
HinP1I	GCGC	2 cut(s)	140, 456
HincII	GTYRAC	1 cut(s)	196
HindII	GTYRAC	1 cut(s)	196
HinfI	GANTC	6 cut(s)	416, 470, 661, 746, 755, 827
HpaII	CCGG	4 cut(s)	146, 354, 567, 978
HphI	GGTGA	1 cut(s)	181
Hpy166II	GTNNAC	6 cut(s)	13, 196, 231, 708, 909, 943
Hpy188I	TCNGA	4 cut(s)	322, 342, 657, 751
Hpy188III	TCNNGA	4 cut(s)	413, 494, 528, 733
Hpy8I	GTNNAC	6 cut(s)	13, 196, 231, 708, 909, 943
Hpy99I	CGWCG	1 cut(s)	109
HpyAV	CCTTC	1 cut(s)	1024
HpyCH4III	ACNGT	4 cut(s)	23, 174, 193, 996
HpyCH4IV	ACGT	1 cut(s)	186
HpyCH4V	TGCA	6 cut(s)	13, 581, 676, 680, 717, 962
HpyF10VI	GCNNNNNNNGC	5 cut(s)	24, 107, 314, 497, 677
HpyF3I	CTNAG	3 cut(s)	492, 597, 863
HpySE526I	ACGT	1 cut(s)	186
Hsp92II	CATG	7 cut(s)	70, 209, 387, 680, 763, 906, 950
HspAI	GCGC	2 cut(s)	140, 456
KroI	GCCGGC	1 cut(s)	977
KroNI	GCCGGC	1 cut(s)	979
Kzo9I	GATC	2 cut(s)	39, 127
LmnI	GCTCC	3 cut(s)	314, 519, 778
Lsp1109I	GCAGC	5 cut(s)	113, 129, 729, 750, 800
LweI	GCATC	2 cut(s)	326, 487
MabI	ACCWGGT	1 cut(s)	289
MaeI	CTAG	2 cut(s)	125, 852
MaeII	ACGT	1 cut(s)	186
MaeIII	GTNAC	3 cut(s)	182, 187, 841
MalI	GATC	2 cut(s)	41, 129
MboI	GATC	2 cut(s)	39, 127
MboII	GAAGA	5 cut(s)	34, 211, 335, 670, 764
MfeI	CAATTG	1 cut(s)	1049
MhlI	GDGCHC	2 cut(s)	15, 217
MlsI	TGGCCA	1 cut(s)	605
MluCI	AATT	7 cut(s)	132, 327, 554, 619, 736, 1049, 1063
MluNI	TGGCCA	1 cut(s)	605
MlyI	GAGTC	1 cut(s)	655
MnlI	CCTC	9 cut(s)	261, 273, 278, 546, 606, 908, 920, 965, 979
Mox20I	TGGCCA	1 cut(s)	605
Mph1103I	ATGCAT	1 cut(s)	678
MroNI	GCCGGC	1 cut(s)	977
MroXI	GAANNNNTTC	1 cut(s)	355
MscI	TGGCCA	1 cut(s)	605
MseI	TTAA	2 cut(s)	345, 953
MslI	CAYNNNNRTG	4 cut(s)	59, 95, 210, 703
Msp20I	TGGCCA	1 cut(s)	605
MspA1I	CMGCKG	2 cut(s)	791, 816
MspI	CCGG	4 cut(s)	146, 354, 567, 978
MspR9I	CCNGG	4 cut(s)	147, 291, 568, 920
MunI	CAATTG	1 cut(s)	1049
MvaI	CCWGG	2 cut(s)	291, 920
MwoI	GCNNNNNNNGC	5 cut(s)	24, 107, 314, 497, 677
NaeI	GCCGGC	1 cut(s)	979
NciI	CCSGG	2 cut(s)	147, 568
NcoI	CCATGG	2 cut(s)	902, 946
NdeII	GATC	2 cut(s)	39, 127
NgoMIV	GCCGGC	1 cut(s)	977
NlaIII	CATG	7 cut(s)	70, 209, 387, 680, 763, 906, 950
NlaIV	GGNNCC	2 cut(s)	976, 990
NmuCI	GTSAC	2 cut(s)	187, 841
NsiI	ATGCAT	1 cut(s)	678
NspI	RCATGY	1 cut(s)	680
PaeI	GCATGC	1 cut(s)	680
PdiI	GCCGGC	1 cut(s)	979
PdmI	GAANNNNTTC	1 cut(s)	355
PfeI	GAWTC	5 cut(s)	416, 470, 746, 755, 827
PinAI	ACCGGT	1 cut(s)	353
PkrI	GCNGC	5 cut(s)	103, 144, 719, 765, 790
PleI	GAGTC	1 cut(s)	655
PpsI	GAGTC	1 cut(s)	655
PshAI	GACNNNNGTC	1 cut(s)	938
PshBI	ATTAAT	1 cut(s)	345
Psp6I	CCWGG	2 cut(s)	289, 918
PspGI	CCWGG	2 cut(s)	289, 918
PspN4I	GGNNCC	2 cut(s)	976, 990
PspPI	GGNCC	2 cut(s)	287, 332
PvuII	CAGCTG	1 cut(s)	791
RsaI	GTAC	2 cut(s)	837, 908
RsaNI	GTAC	2 cut(s)	836, 907
RseI	CAYNNNNRTG	4 cut(s)	59, 95, 210, 703
SaqAI	TTAA	2 cut(s)	345, 953
SatI	GCNGC	5 cut(s)	102, 143, 718, 764, 789
Sau3AI	GATC	2 cut(s)	39, 127
Sau96I	GGNCC	2 cut(s)	287, 332
SchI	GAGTC	1 cut(s)	655
ScrFI	CCNGG	4 cut(s)	147, 291, 568, 920
SduI	GDGCHC	2 cut(s)	15, 217
SexAI	ACCWGGT	1 cut(s)	289
SfaNI	GCATC	2 cut(s)	326, 487
SinI	GGWCC	1 cut(s)	287
SmiMI	CAYNNNNRTG	4 cut(s)	59, 95, 210, 703
SphI	GCATGC	1 cut(s)	680
Sse9I	AATT	7 cut(s)	132, 327, 554, 619, 736, 1049, 1063
SsiI	CCGC	2 cut(s)	155, 816
SspI	AATATT	3 cut(s)	380, 403, 685
SspMI	CTAG	2 cut(s)	125, 852
StyD4I	CCNGG	4 cut(s)	145, 289, 566, 918
StyI	CCWWGG	4 cut(s)	606, 893, 902, 946
TaaI	ACNGT	4 cut(s)	23, 174, 193, 996
TaiI	ACGT	1 cut(s)	189
TaqI	TCGA	2 cut(s)	130, 664
TasI	AATT	7 cut(s)	132, 327, 554, 619, 736, 1049, 1063
TfiI	GAWTC	5 cut(s)	416, 470, 746, 755, 827
Tru1I	TTAA	2 cut(s)	345, 953
Tru9I	TTAA	2 cut(s)	345, 953
TscAI	CASTG	7 cut(s)	34, 238, 247, 309, 524, 846, 999
TseFI	GTSAC	2 cut(s)	187, 841
TseI	GCWGC	5 cut(s)	101, 142, 717, 763, 788
Tsp45I	GTSAC	2 cut(s)	187, 841
TspDTI	ATGAA	4 cut(s)	55, 288, 348, 372
TspRI	CASTG	7 cut(s)	34, 238, 247, 309, 524, 846, 999
VneI	GTGCAC	1 cut(s)	11
VpaK11BI	GGWCC	1 cut(s)	287
VspI	ATTAAT	1 cut(s)	345
XapI	RAATTY	1 cut(s)	554
XceI	RCATGY	1 cut(s)	680
XcmI	CCANNNNNNNNNTGG	1 cut(s)	94
XmiI	GTMKAC	1 cut(s)	942
XmnI	GAANNNNTTC	1 cut(s)	355
XspI	CTAG	2 cut(s)	125, 852
Zsp2I	ATGCAT	1 cut(s)	678

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.