zinc finger
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G24830 |
| fragaria_vesca | FvH4_2g41350 |
| malus_domestica | MD08G1051900.v1.1 |
| prunus_persica | Prupe.1G396900_v2.0.a1 |
| pyrus_communis | pycom08g04340 |
| rosa_chinensis | RchiOBHm_Chr6g0299181 |
| rosa_laevigata | RLG00000011456 |
| rosa_multiflora | Rmu_sc0001434.1_g000014 |
| rosa_roxburghii | Rroxscaffold_7G00168940 |
| rosa_rugosa | Rorug06G0286000 |
| rosa_samantha | Rh6AG396900 Rh6BG405600 Rh6CG411700 Rh6DG398400 |
| rosa_wichuraiana | Rw6G034760 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 1263 |
| AciI | CCGC | 4 cut(s) | 563, 636, 1015, 1207 |
| AclWI | GGATC | 2 cut(s) | 310, 685 |
| AcoI | YGGCCR | 1 cut(s) | 967 |
| AcsI | RAATTY | 1 cut(s) | 1194 |
| AcuI | CTGAAG | 4 cut(s) | 300, 527, 750, 795 |
| AcyI | GRCGYC | 1 cut(s) | 960 |
| AfaI | GTAC | 4 cut(s) | 704, 1002, 1221, 1420 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 278, 310 |
| Alw21I | GWGCWC | 2 cut(s) | 193, 1041 |
| Alw26I | GTCTC | 3 cut(s) | 813, 967, 1296 |
| AlwI | GGATC | 2 cut(s) | 310, 685 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 773, 1376 |
| AoxI | GGCC | 1 cut(s) | 967 |
| ApeKI | GCWGC | 6 cut(s) | 439, 1130, 1139, 1376, 1436, 1439 |
| ApoI | RAATTY | 1 cut(s) | 1194 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1240, 1272 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 33, 138, 910 |
| AspS9I | GGNCC | 2 cut(s) | 127, 1256 |
| AsuHPI | GGTGA | 1 cut(s) | 1351 |
| AsuII | TTCGAA | 1 cut(s) | 914 |
| AvaII | GGWCC | 2 cut(s) | 127, 1256 |
| BalI | TGGCCA | 1 cut(s) | 969 |
| BanII | GRGCYC | 1 cut(s) | 193 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 987, 1019 |
| Bbv12I | GWGCWC | 2 cut(s) | 193, 1041 |
| BbvI | GCAGC | 6 cut(s) | 451, 1142, 1151, 1363, 1426, 1448 |
| BccI | CCATC | 8 cut(s) | 112, 293, 323, 535, 719, 916, 943, 1330 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 431, 465 |
| BcoDI | GTCTC | 3 cut(s) | 813, 967, 1296 |
| BfaI | CTAG | 6 cut(s) | 485, 674, 830, 900, 1328, 1361 |
| BfmI | CTRYAG | 1 cut(s) | 1452 |
| BglII | AGATCT | 2 cut(s) | 384, 1357 |
| BisI | GCNGC | 6 cut(s) | 440, 1131, 1140, 1377, 1437, 1440 |
| BlsI | GCNGC | 6 cut(s) | 441, 1132, 1141, 1378, 1438, 1441 |
| BmcAI | AGTACT | 1 cut(s) | 1002 |
| Bme18I | GGWCC | 2 cut(s) | 127, 1256 |
| BmgT120I | GGNCC | 2 cut(s) | 127, 1256 |
| BmiI | GGNNCC | 1 cut(s) | 267 |
| BmsI | GCATC | 2 cut(s) | 229, 268 |
| BpmI | CTGGAG | 2 cut(s) | 264, 284 |
| Bpu10I | CCTNAGC | 1 cut(s) | 255 |
| Bpu14I | TTCGAA | 1 cut(s) | 914 |
| BpuEI | CTTGAG | 2 cut(s) | 1055, 1469 |
| BsaHI | GRCGYC | 1 cut(s) | 960 |
| BsaI | GGTCTC | 1 cut(s) | 813 |
| BsaJI | CCNNGG | 1 cut(s) | 970 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1078, 1108 |
| Bse1I | ACTGG | 2 cut(s) | 1026, 1259 |
| BseDI | CCNNGG | 1 cut(s) | 970 |
| BseGI | GGATG | 4 cut(s) | 304, 622, 754, 954 |
| BseMII | CTCAG | 5 cut(s) | 157, 246, 399, 516, 722 |
| BseNI | ACTGG | 2 cut(s) | 1026, 1259 |
| BseRI | GAGGAG | 5 cut(s) | 110, 749, 752, 755, 758 |
| BseXI | GCAGC | 6 cut(s) | 451, 1142, 1151, 1363, 1426, 1448 |
| BshFI | GGCC | 1 cut(s) | 969 |
| BsiHKAI | GWGCWC | 2 cut(s) | 193, 1041 |
| BsmAI | GTCTC | 3 cut(s) | 813, 967, 1296 |
| BsmBI | CGTCTC | 1 cut(s) | 967 |
| BsnI | GGCC | 1 cut(s) | 969 |
| Bso31I | GGTCTC | 1 cut(s) | 813 |
| Bsp119I | TTCGAA | 1 cut(s) | 914 |
| Bsp1286I | GDGCHC | 2 cut(s) | 193, 1041 |
| Bsp143I | GATC | 4 cut(s) | 302, 384, 677, 1357 |
| BspACI | CCGC | 4 cut(s) | 563, 636, 1015, 1207 |
| BspANI | GGCC | 1 cut(s) | 969 |
| BspCNI | CTCAG | 5 cut(s) | 156, 247, 400, 517, 721 |
| BspHI | TCATGA | 1 cut(s) | 235 |
| BspLI | GGNNCC | 1 cut(s) | 267 |
| BspPI | GGATC | 2 cut(s) | 310, 685 |
| BspT104I | TTCGAA | 1 cut(s) | 914 |
| BspTNI | GGTCTC | 1 cut(s) | 813 |
| BsrI | ACTGG | 2 cut(s) | 1026, 1259 |
| BssECI | CCNNGG | 1 cut(s) | 970 |
| BssMI | GATC | 4 cut(s) | 302, 384, 677, 1357 |
| BssNI | GRCGYC | 1 cut(s) | 960 |
| BssT1I | CCWWGG | 1 cut(s) | 970 |
| Bst4CI | ACNGT | 1 cut(s) | 941 |
| Bst6I | CTCTTC | 3 cut(s) | 276, 726, 1146 |
| BstACI | GRCGYC | 1 cut(s) | 960 |
| BstBI | TTCGAA | 1 cut(s) | 914 |
| BstC8I | GCNNGC | 1 cut(s) | 7 |
| BstDEI | CTNAG | 8 cut(s) | 143, 255, 381, 408, 525, 552, 708, 991 |
| BstEII | GGTNACC | 1 cut(s) | 935 |
| BstF5I | GGATG | 4 cut(s) | 304, 622, 754, 954 |
| BstKTI | GATC | 4 cut(s) | 305, 387, 680, 1360 |
| BstMAI | GTCTC | 3 cut(s) | 813, 967, 1296 |
| BstMBI | GATC | 4 cut(s) | 302, 384, 677, 1357 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 265, 878, 966, 1130, 1136, 1139, 1433, 1448 |
| BstNSI | RCATGY | 1 cut(s) | 1431 |
| BstPI | GGTNACC | 1 cut(s) | 935 |
| BstSFI | CTRYAG | 1 cut(s) | 1452 |
| BstV1I | GCAGC | 6 cut(s) | 451, 1142, 1151, 1363, 1426, 1448 |
| BstX2I | RGATCY | 3 cut(s) | 384, 677, 1357 |
| BstYI | RGATCY | 3 cut(s) | 384, 677, 1357 |
| BsuRI | GGCC | 1 cut(s) | 969 |
| BtsCI | GGATG | 4 cut(s) | 304, 622, 754, 954 |
| BtsI | GCAGTG | 1 cut(s) | 867 |
| BtsIMutI | CAGTG | 3 cut(s) | 151, 867, 1019 |
| Cac8I | GCNNGC | 1 cut(s) | 7 |
| CaiI | CAGNNNCTG | 2 cut(s) | 773, 1376 |
| CciI | TCATGA | 1 cut(s) | 235 |
| Cfr13I | GGNCC | 2 cut(s) | 127, 1256 |
| CseI | GACGC | 1 cut(s) | 949 |
| Csp6I | GTAC | 4 cut(s) | 703, 1001, 1220, 1419 |
| CviAII | CATG | 6 cut(s) | 131, 236, 479, 612, 1211, 1428 |
| CviQI | GTAC | 4 cut(s) | 703, 1001, 1220, 1419 |
| DdeI | CTNAG | 8 cut(s) | 143, 255, 381, 408, 525, 552, 708, 991 |
| DpnI | GATC | 4 cut(s) | 304, 386, 679, 1359 |
| DpnII | GATC | 4 cut(s) | 302, 384, 677, 1357 |
| DraI | TTTAAA | 1 cut(s) | 183 |
| EaeI | YGGCCR | 1 cut(s) | 967 |
| Eam1104I | CTCTTC | 3 cut(s) | 276, 726, 1146 |
| EarI | CTCTTC | 3 cut(s) | 276, 726, 1146 |
| EciI | GGCGGA | 1 cut(s) | 651 |
| Ecl136II | GAGCTC | 1 cut(s) | 191 |
| Eco130I | CCWWGG | 1 cut(s) | 970 |
| Eco24I | GRGCYC | 1 cut(s) | 193 |
| Eco31I | GGTCTC | 1 cut(s) | 813 |
| Eco32I | GATATC | 1 cut(s) | 498 |
| Eco47I | GGWCC | 2 cut(s) | 127, 1256 |
| Eco53kI | GAGCTC | 1 cut(s) | 191 |
| Eco57I | CTGAAG | 4 cut(s) | 300, 527, 750, 795 |
| Eco91I | GGTNACC | 1 cut(s) | 935 |
| EcoICRI | GAGCTC | 1 cut(s) | 191 |
| EcoO65I | GGTNACC | 1 cut(s) | 935 |
| EcoRV | GATATC | 1 cut(s) | 498 |
| EcoT14I | CCWWGG | 1 cut(s) | 970 |
| EcoT38I | GRGCYC | 1 cut(s) | 193 |
| ErhI | CCWWGG | 1 cut(s) | 970 |
| Esp3I | CGTCTC | 1 cut(s) | 967 |
| FaeI | CATG | 6 cut(s) | 134, 239, 482, 615, 1214, 1431 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 54, 86 |
| FatI | CATG | 6 cut(s) | 130, 235, 478, 611, 1210, 1427 |
| FauI | CCCGC | 1 cut(s) | 1214 |
| FblI | GTMKAC | 1 cut(s) | 1263 |
| Fnu4HI | GCNGC | 6 cut(s) | 440, 1131, 1140, 1377, 1437, 1440 |
| FokI | GGATG | 4 cut(s) | 311, 629, 761, 961 |
| FriOI | GRGCYC | 1 cut(s) | 193 |
| Fsp4HI | GCNGC | 6 cut(s) | 440, 1131, 1140, 1377, 1437, 1440 |
| FspBI | CTAG | 6 cut(s) | 485, 674, 830, 900, 1328, 1361 |
| GluI | GCNGC | 6 cut(s) | 440, 1131, 1140, 1377, 1437, 1440 |
| GsuI | CTGGAG | 2 cut(s) | 264, 284 |
| HaeIII | GGCC | 1 cut(s) | 969 |
| HgaI | GACGC | 1 cut(s) | 949 |
| Hin1I | GRCGYC | 1 cut(s) | 960 |
| Hin1II | CATG | 6 cut(s) | 134, 239, 482, 615, 1214, 1431 |
| HindIII | AAGCTT | 1 cut(s) | 1272 |
| HinfI | GANTC | 9 cut(s) | 65, 374, 608, 683, 770, 779, 892, 1157, 1229 |
| HphI | GGTGA | 1 cut(s) | 1351 |
| Hpy166II | GTNNAC | 3 cut(s) | 1222, 1264, 1342 |
| Hpy188III | TCNNGA | 6 cut(s) | 38, 113, 236, 263, 830, 1034 |
| Hpy8I | GTNNAC | 3 cut(s) | 1222, 1264, 1342 |
| Hpy99I | CGWCG | 1 cut(s) | 1384 |
| HpyAV | CCTTC | 4 cut(s) | 161, 359, 797, 938 |
| HpyCH4III | ACNGT | 1 cut(s) | 941 |
| HpyCH4V | TGCA | 6 cut(s) | 149, 178, 426, 439, 668, 1124 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 265, 878, 966, 1130, 1136, 1139, 1433, 1448 |
| HpyF3I | CTNAG | 8 cut(s) | 143, 255, 381, 408, 525, 552, 708, 991 |
| Hsp92I | GRCGYC | 1 cut(s) | 960 |
| Hsp92II | CATG | 6 cut(s) | 134, 239, 482, 615, 1214, 1431 |
| Kzo9I | GATC | 4 cut(s) | 302, 384, 677, 1357 |
| LmnI | GCTCC | 2 cut(s) | 265, 1086 |
| Lsp1109I | GCAGC | 6 cut(s) | 451, 1142, 1151, 1363, 1426, 1448 |
| LweI | GCATC | 2 cut(s) | 229, 268 |
| MaeI | CTAG | 6 cut(s) | 485, 674, 830, 900, 1328, 1361 |
| MaeIII | GTNAC | 3 cut(s) | 624, 935, 1017 |
| MalI | GATC | 4 cut(s) | 304, 386, 679, 1359 |
| MboI | GATC | 4 cut(s) | 302, 384, 677, 1357 |
| MfeI | CAATTG | 1 cut(s) | 536 |
| MflI | RGATCY | 3 cut(s) | 384, 677, 1357 |
| MhlI | GDGCHC | 2 cut(s) | 193, 1041 |
| MlsI | TGGCCA | 1 cut(s) | 969 |
| MluCI | AATT | 3 cut(s) | 51, 536, 1194 |
| MluNI | TGGCCA | 1 cut(s) | 969 |
| MlyI | GAGTC | 1 cut(s) | 1238 |
| Mox20I | TGGCCA | 1 cut(s) | 969 |
| MroXI | GAANNNNTTC | 3 cut(s) | 33, 138, 910 |
| MscI | TGGCCA | 1 cut(s) | 969 |
| MseI | TTAA | 4 cut(s) | 182, 249, 980, 1181 |
| MslI | CAYNNNNRTG | 2 cut(s) | 327, 1426 |
| Msp20I | TGGCCA | 1 cut(s) | 969 |
| MspA1I | CMGCKG | 1 cut(s) | 1439 |
| MunI | CAATTG | 1 cut(s) | 536 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 265, 878, 966, 1130, 1136, 1139, 1433, 1448 |
| NdeII | GATC | 4 cut(s) | 302, 384, 677, 1357 |
| NlaIII | CATG | 6 cut(s) | 134, 239, 482, 615, 1214, 1431 |
| NlaIV | GGNNCC | 1 cut(s) | 267 |
| NmuCI | GTSAC | 1 cut(s) | 1017 |
| NspI | RCATGY | 1 cut(s) | 1431 |
| NspV | TTCGAA | 1 cut(s) | 914 |
| PagI | TCATGA | 1 cut(s) | 235 |
| PdmI | GAANNNNTTC | 3 cut(s) | 33, 138, 910 |
| PfeI | GAWTC | 8 cut(s) | 65, 374, 608, 683, 770, 779, 892, 1157 |
| PkrI | GCNGC | 6 cut(s) | 441, 1132, 1141, 1378, 1438, 1441 |
| PleI | GAGTC | 1 cut(s) | 1237 |
| PpsI | GAGTC | 1 cut(s) | 1237 |
| Psp124BI | GAGCTC | 1 cut(s) | 193 |
| PspEI | GGTNACC | 1 cut(s) | 935 |
| PspN4I | GGNNCC | 1 cut(s) | 267 |
| PspPI | GGNCC | 2 cut(s) | 127, 1256 |
| PstNI | CAGNNNCTG | 2 cut(s) | 773, 1376 |
| PsuI | RGATCY | 3 cut(s) | 384, 677, 1357 |
| PvuII | CAGCTG | 1 cut(s) | 1439 |
| RsaI | GTAC | 4 cut(s) | 704, 1002, 1221, 1420 |
| RsaNI | GTAC | 4 cut(s) | 703, 1001, 1220, 1419 |
| RseI | CAYNNNNRTG | 2 cut(s) | 327, 1426 |
| SacI | GAGCTC | 1 cut(s) | 193 |
| SaqAI | TTAA | 4 cut(s) | 182, 249, 980, 1181 |
| SatI | GCNGC | 6 cut(s) | 440, 1131, 1140, 1377, 1437, 1440 |
| Sau3AI | GATC | 4 cut(s) | 302, 384, 677, 1357 |
| Sau96I | GGNCC | 2 cut(s) | 127, 1256 |
| ScaI | AGTACT | 1 cut(s) | 1002 |
| SchI | GAGTC | 1 cut(s) | 1238 |
| SduI | GDGCHC | 2 cut(s) | 193, 1041 |
| SfaNI | GCATC | 2 cut(s) | 229, 268 |
| SfcI | CTRYAG | 1 cut(s) | 1452 |
| SfuI | TTCGAA | 1 cut(s) | 914 |
| SinI | GGWCC | 2 cut(s) | 127, 1256 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 327, 1426 |
| SmlI | CTYRAG | 2 cut(s) | 1034, 1484 |
| SmoI | CTYRAG | 2 cut(s) | 1034, 1484 |
| Sse9I | AATT | 3 cut(s) | 51, 536, 1194 |
| SsiI | CCGC | 4 cut(s) | 563, 636, 1015, 1207 |
| SspMI | CTAG | 6 cut(s) | 485, 674, 830, 900, 1328, 1361 |
| SstI | GAGCTC | 1 cut(s) | 193 |
| StyI | CCWWGG | 1 cut(s) | 970 |
| TaaI | ACNGT | 1 cut(s) | 941 |
| TaqI | TCGA | 4 cut(s) | 305, 319, 914, 1160 |
| TaqII | GACCGA | 1 cut(s) | 115 |
| TasI | AATT | 3 cut(s) | 51, 536, 1194 |
| TatI | WGTACW | 3 cut(s) | 1000, 1219, 1418 |
| TfiI | GAWTC | 8 cut(s) | 65, 374, 608, 683, 770, 779, 892, 1157 |
| Tru1I | TTAA | 4 cut(s) | 182, 249, 980, 1181 |
| Tru9I | TTAA | 4 cut(s) | 182, 249, 980, 1181 |
| TscAI | CASTG | 3 cut(s) | 151, 874, 1026 |
| TseFI | GTSAC | 1 cut(s) | 1017 |
| TseI | GCWGC | 6 cut(s) | 439, 1130, 1139, 1376, 1436, 1439 |
| Tsp45I | GTSAC | 1 cut(s) | 1017 |
| TspDTI | ATGAA | 7 cut(s) | 147, 462, 531, 765, 816, 1203, 1308 |
| TspRI | CASTG | 3 cut(s) | 151, 874, 1026 |
| VpaK11BI | GGWCC | 2 cut(s) | 127, 1256 |
| XapI | RAATTY | 1 cut(s) | 1194 |
| XbaI | TCTAGA | 1 cut(s) | 829 |
| XceI | RCATGY | 1 cut(s) | 1431 |
| XmiI | GTMKAC | 1 cut(s) | 1263 |
| XmnI | GAANNNNTTC | 3 cut(s) | 33, 138, 910 |
| XspI | CTAG | 6 cut(s) | 485, 674, 830, 900, 1328, 1361 |
| ZrmI | AGTACT | 1 cut(s) | 1002 |