Prupe.1G396900_v2.0.a1

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0016102
Physical Location & Seq
Forward (+)
35170660 .. 35173581
2922 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G396900.1

Sequence Viewer

Length: 1500 bp
ATGGCAAACGAGGAAGAGAGGGTTCTAGAGAACCTGCTGGAGCTTCAATTGCAAGAGCAACGAGTCTCTCTCGCTACCATCAACGACGCTTTAGCCTCCGAGCCTAACAATACCGAGATACTCGCGCTTCATGAGGAGATTGTTCAGGCGATTAAAGATGCTGAGGAAGGGCTCCTGCACCTTAAACGTGCTCGGTTATTACGAGAAGCTGATTTAGTATTAGATGGTTCTGCTCATGCTGATGAGGATGTCAAGATGGAGACTCTTGATCCAACAGATGTTGAGCCGGAGCCGCTAGAGGAACCGAGCTATACTGTTGGGTCGAAATGTAGGTTCTGTCACACTGATGGGCGCTGGTATAATGGTCAAGTTATAGGGTTGGATGGTTCTAATTCTGCTAAGATTTCTTTCCTCACTCCTACATCAGAAAATATGCTGATATGCAAGTTCTTTCTACAACAACGATGTCGATTTGGTACTAACTGCCGCTTATCACATGGAGTTGATGTCCCACTATCCTCACTGAAAAAGTATACCCCAACAATATGGGAGCAGTCACATGTGGGGTCAAATATTTGGGCAGTCACTGATGGTAAAACTGGTGTTTGGAGGGAAGCTAAACTTGAATCATGGGATGGTGGTGCGCTTGGTGTTGGGAAAGTTGTTTTCCGAGATGATGGAAGCTCTGCAAATCTTGGTGAAGAAGCTATTACATTATCGGAGTATGCTCAAATGAGTGCTGAAGAAGAAAGTGATTCCAGCTCAGAACAATCTGATTTTAGTGACGATGAAGATGAGGGCCCACAGGGTTTAGGATTCCTTGAAAGCACCATCTTGCAGAGGGGCATCCAGACAGATACTGCCATATTTGCAAAGTGGGAGAACCACACCAGGGGCATAGCTTCCAAGATGATGGCCAATATGGGTTACCTTGAAGGAACGGGTCTTGGTGCATCTGGGCAGGGAATTGTAGATCCCATCTCTGTGAAGGTCCTTCCAGCAAAGCAATCTCTTGACCTTGCTGTTGGTTCTTGTGAAGGCAAAGTTGAAGAGGGTAAGGAGAATCAAGGAAAGAAGCGTAGCCGGGGTGGTAAGAGGAAACGTGAAAAGAAGTTTGCAGCATTGGCAAGGGCAGCAAAAGAAGAAGAGGAATCCACACCAGATGTCTTTAGTCTTATTAATAGCCAACTTGCAATGCATGGTGAAGCTTTGAATGGTGGATCAGGGAAGAAGCAGCAGAACAAAGGTTCAGGGGAGGGGAAGAGAGTTGATCGACGGGCGTTAGTTGCGTATGATGATGAAGTGAAGGACTTGAAGGTGCGAGTTGTGAAGCTTGAAGAAATGGCGAGTAGAAACAAAAAAGAGAAGGTGGTTTATGAGGCTGCAATGAGGAAATTGACAGAGACTCGCAAAGCTTTGGCAGAGGCTGAGGCAGCTCAGGCTTCTGCATCAAATGCAGTTGTCAGTAGAGAAAAAGAGAAGAGATGGCTTAAGTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
G-patch zf-CCCH

Protein Analysis

500

Amino Acids

54.85

Weight (kDa)

5.21

Isoelectric Point (pI)

45.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016102)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G24830
fragaria_vesca FvH4_2g41350
malus_domestica MD08G1051900.v1.1
prunus_persica Prupe.1G396900_v2.0.a1
pyrus_communis pycom08g04340
rosa_chinensis RchiOBHm_Chr6g0299181
rosa_laevigata RLG00000011456
rosa_multiflora Rmu_sc0001434.1_g000014
rosa_roxburghii Rroxscaffold_7G00168940
rosa_rugosa Rorug06G0286000
rosa_samantha Rh6AG396900 Rh6BG405600 Rh6CG411700 Rh6DG398400
rosa_wichuraiana Rw6G034760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 42
AccI GTMKAC 1 cut(s) 533
AccII CGCG 1 cut(s) 125
AciI CCGC 2 cut(s) 293, 487
AclWI GGATC 3 cut(s) 263, 968, 1228
AcoI YGGCCR 1 cut(s) 915
AcuI CTGAAG 1 cut(s) 762
AfaI GTAC 1 cut(s) 478
AfiI CCNNNNNNNGG 1 cut(s) 892
AflII CTTAAG 1 cut(s) 1490
AflIII ACRYGT 1 cut(s) 559
AgsI TTSAA 8 cut(s) 47, 626, 824, 935, 1049, 1213, 1315, 1337
AjnI CCWGG 1 cut(s) 890
Alw21I GWGCWC 1 cut(s) 193
Alw26I GTCTC 3 cut(s) 70, 254, 1397
AlwI GGATC 3 cut(s) 263, 968, 1228
AlwNI CAGNNNCTG 3 cut(s) 587, 860, 1427
AoxI GGCC 2 cut(s) 799, 915
ApaI GGGCCC 1 cut(s) 803
ApeKI GCWGC 5 cut(s) 1118, 1133, 1234, 1382, 1433
AseI ATTAAT 1 cut(s) 1179
AspLEI GCGC 3 cut(s) 127, 354, 646
AspS9I GGNCC 3 cut(s) 799, 800, 991
AsuC2I CCSGG 1 cut(s) 1085
AsuHPI GGTGA 2 cut(s) 710, 1214
AvaII GGWCC 1 cut(s) 991
BaeGI GKGCMC 1 cut(s) 803
BalI TGGCCA 1 cut(s) 917
BanII GRGCYC 2 cut(s) 174, 803
Bbv12I GWGCWC 1 cut(s) 193
BbvCI CCTCAGC 2 cut(s) 162, 1428
BbvI GCAGC 5 cut(s) 1130, 1145, 1246, 1369, 1445
BciT130I CCWGG 1 cut(s) 892
BcnI CCSGG 1 cut(s) 1085
BcoDI GTCTC 3 cut(s) 70, 254, 1397
BfaI CTAG 2 cut(s) 26, 296
BfoI RGCGCY 1 cut(s) 355
BfrI CTTAAG 1 cut(s) 1490
BfuAI ACCTGC 1 cut(s) 42
BisI GCNGC 7 cut(s) 293, 487, 1119, 1134, 1235, 1383, 1434
BlsI GCNGC 7 cut(s) 294, 488, 1120, 1135, 1236, 1384, 1435
Bme1390I CCNGG 2 cut(s) 892, 1085
Bme18I GGWCC 1 cut(s) 991
BmgT120I GGNCC 3 cut(s) 799, 800, 991
BmiI GGNNCC 4 cut(s) 173, 291, 303, 801
BmrFI CCNGG 2 cut(s) 892, 1085
BmsI GCATC 4 cut(s) 148, 855, 962, 1457
BplI GAGNNNNNCTC 2 cut(s) 54, 86
BpmI CTGGAG 1 cut(s) 59
Bpu10I CCTNAGC 3 cut(s) 162, 1428, 1437
BpuMI CCSGG 1 cut(s) 1085
BsaJI CCNNGG 2 cut(s) 891, 1084
BsaXI ACNNNNNCTCC 2 cut(s) 492, 522
Bsc4I CCNNNNNNNGG 1 cut(s) 892
Bse1I ACTGG 1 cut(s) 604
Bse3DI GCAATG 2 cut(s) 1200, 1392
BseBI CCWGG 1 cut(s) 892
BseDI CCNNGG 2 cut(s) 891, 1084
BseGI GGATG 4 cut(s) 253, 388, 640, 846
BseLI CCNNNNNNNGG 1 cut(s) 892
BseMI GCAATG 2 cut(s) 1200, 1392
BseMII CTCAG 4 cut(s) 153, 777, 1419, 1451
BseNI ACTGG 1 cut(s) 604
BseRI GAGGAG 1 cut(s) 149
BseSI GKGCMC 1 cut(s) 803
BseXI GCAGC 5 cut(s) 1130, 1145, 1246, 1369, 1445
BsgI GTGCAG 1 cut(s) 161
Bsh1236I CGCG 1 cut(s) 125
BshFI GGCC 2 cut(s) 801, 917
BsiHKAI GWGCWC 1 cut(s) 193
BsiSI CCGG 2 cut(s) 287, 1084
BslFI GGGAC 1 cut(s) 494
BslI CCNNNNNNNGG 1 cut(s) 892
BsmAI GTCTC 3 cut(s) 70, 254, 1397
BsmFI GGGAC 1 cut(s) 494
BsnI GGCC 2 cut(s) 801, 917
Bsp120I GGGCCC 1 cut(s) 799
Bsp1286I GDGCHC 3 cut(s) 174, 193, 803
Bsp143I GATC 4 cut(s) 268, 973, 1220, 1270
BspACI CCGC 2 cut(s) 293, 487
BspANI GGCC 2 cut(s) 801, 917
BspCNI CTCAG 4 cut(s) 154, 776, 1420, 1450
BspFNI CGCG 1 cut(s) 125
BspHI TCATGA 1 cut(s) 130
BspLI GGNNCC 4 cut(s) 173, 291, 303, 801
BspMI ACCTGC 1 cut(s) 42
BspPI GGATC 3 cut(s) 263, 968, 1228
BspTI CTTAAG 1 cut(s) 1490
BsrDI GCAATG 2 cut(s) 1200, 1392
BsrI ACTGG 1 cut(s) 604
BssECI CCNNGG 2 cut(s) 891, 1084
BssMI GATC 4 cut(s) 268, 973, 1220, 1270
BssNAI GTATAC 1 cut(s) 534
Bst1107I GTATAC 1 cut(s) 534
Bst2UI CCWGG 1 cut(s) 892
Bst4CI ACNGT 1 cut(s) 316
Bst6I CTCTTC 5 cut(s) 9, 1044, 1140, 1256, 1475
BstAFI CTTAAG 1 cut(s) 1490
BstAPI GCANNNNNTGC 1 cut(s) 1454
BstDEI CTNAG 5 cut(s) 162, 399, 763, 1428, 1437
BstEII GGTNACC 1 cut(s) 926
BstF5I GGATG 4 cut(s) 253, 388, 640, 846
BstFNI CGCG 1 cut(s) 125
BstH2I RGCGCY 1 cut(s) 355
BstHHI GCGC 3 cut(s) 127, 354, 646
BstKTI GATC 4 cut(s) 271, 976, 1223, 1273
BstMAI GTCTC 3 cut(s) 70, 254, 1397
BstMBI GATC 4 cut(s) 268, 973, 1220, 1270
BstMWI GCNNNNNNNGC 9 cut(s) 49, 292, 869, 1124, 1133, 1286, 1433, 1439, 1454
BstNI CCWGG 1 cut(s) 892
BstNSI RCATGY 1 cut(s) 563
BstPI GGTNACC 1 cut(s) 926
BstSCI CCNGG 2 cut(s) 890, 1083
BstSLI GKGCMC 1 cut(s) 803
BstUI CGCG 1 cut(s) 125
BstV1I GCAGC 5 cut(s) 1130, 1145, 1246, 1369, 1445
BstX2I RGATCY 1 cut(s) 973
BstXI CCANNNNNNTGG 2 cut(s) 546, 913
BstYI RGATCY 1 cut(s) 973
BstZ17I GTATAC 1 cut(s) 534
BsuRI GGCC 2 cut(s) 801, 917
BtsCI GGATG 4 cut(s) 253, 388, 640, 846
BtsIMutI CAGTG 3 cut(s) 342, 521, 585
BveI ACCTGC 1 cut(s) 42
CaiI CAGNNNCTG 3 cut(s) 587, 860, 1427
CciI TCATGA 1 cut(s) 130
CfoI GCGC 3 cut(s) 127, 354, 646
Cfr13I GGNCC 3 cut(s) 799, 800, 991
CseI GACGC 1 cut(s) 95
Csp6I GTAC 1 cut(s) 477
CviAII CATG 6 cut(s) 131, 236, 497, 560, 630, 1199
CviQI GTAC 1 cut(s) 477
DdeI CTNAG 5 cut(s) 162, 399, 763, 1428, 1437
DpnI GATC 4 cut(s) 270, 975, 1222, 1272
DpnII GATC 4 cut(s) 268, 973, 1220, 1270
EaeI YGGCCR 1 cut(s) 915
Eam1104I CTCTTC 5 cut(s) 9, 1044, 1140, 1256, 1475
EarI CTCTTC 5 cut(s) 9, 1044, 1140, 1256, 1475
Eco24I GRGCYC 2 cut(s) 174, 803
Eco47I GGWCC 1 cut(s) 991
Eco57I CTGAAG 1 cut(s) 762
Eco91I GGTNACC 1 cut(s) 926
EcoO109I RGGNCCY 2 cut(s) 799, 991
EcoO65I GGTNACC 1 cut(s) 926
EcoRII CCWGG 1 cut(s) 890
EcoT22I ATGCAT 1 cut(s) 1200
EcoT38I GRGCYC 2 cut(s) 174, 803
FaeI CATG 6 cut(s) 134, 239, 500, 563, 633, 1202
FalI AAGNNNNNCTT 2 cut(s) 606, 638
FaqI GGGAC 1 cut(s) 494
FatI CATG 6 cut(s) 130, 235, 496, 559, 629, 1198
FblI GTMKAC 1 cut(s) 533
Fnu4HI GCNGC 7 cut(s) 293, 487, 1119, 1134, 1235, 1383, 1434
FokI GGATG 4 cut(s) 260, 395, 647, 833
FriOI GRGCYC 2 cut(s) 174, 803
Fsp4HI GCNGC 7 cut(s) 293, 487, 1119, 1134, 1235, 1383, 1434
FspBI CTAG 2 cut(s) 26, 296
GlaI GCGC 3 cut(s) 126, 353, 645
GluI GCNGC 7 cut(s) 293, 487, 1119, 1134, 1235, 1383, 1434
GsuI CTGGAG 1 cut(s) 59
HaeII RGCGCY 1 cut(s) 355
HaeIII GGCC 2 cut(s) 801, 917
HapII CCGG 2 cut(s) 287, 1084
HgaI GACGC 1 cut(s) 95
HhaI GCGC 3 cut(s) 127, 354, 646
Hin1II CATG 6 cut(s) 134, 239, 500, 563, 633, 1202
Hin6I GCGC 3 cut(s) 125, 352, 644
HinP1I GCGC 3 cut(s) 125, 352, 644
HindIII AAGCTT 3 cut(s) 1206, 1331, 1413
HinfI GANTC 8 cut(s) 63, 262, 626, 755, 816, 1063, 1151, 1405
HpaII CCGG 2 cut(s) 287, 1084
HphI GGTGA 2 cut(s) 710, 1214
Hpy166II GTNNAC 1 cut(s) 534
Hpy188I TCNGA 6 cut(s) 100, 427, 671, 721, 766, 775
Hpy188III TCNNGA 6 cut(s) 26, 131, 253, 266, 850, 1013
Hpy8I GTNNAC 1 cut(s) 534
Hpy99I CGWCG 2 cut(s) 89, 1278
HpyAV CCTTC 8 cut(s) 161, 929, 982, 1004, 1031, 1300, 1309, 1360
HpyCH4III ACNGT 1 cut(s) 316
HpyCH4IV ACGT 2 cut(s) 187, 1102
HpyF10VI GCNNNNNNNGC 9 cut(s) 49, 292, 869, 1124, 1133, 1286, 1433, 1439, 1454
HpyF3I CTNAG 5 cut(s) 162, 399, 763, 1428, 1437
HpySE526I ACGT 2 cut(s) 187, 1102
Hsp92II CATG 6 cut(s) 134, 239, 500, 563, 633, 1202
HspAI GCGC 3 cut(s) 125, 352, 644
Kzo9I GATC 4 cut(s) 268, 973, 1220, 1270
LmnI GCTCC 4 cut(s) 40, 177, 289, 550
Lsp1109I GCAGC 5 cut(s) 1130, 1145, 1246, 1369, 1445
LweI GCATC 4 cut(s) 148, 855, 962, 1457
MaeI CTAG 2 cut(s) 26, 296
MaeII ACGT 2 cut(s) 187, 1102
MaeIII GTNAC 5 cut(s) 338, 555, 583, 782, 926
MalI GATC 4 cut(s) 270, 975, 1222, 1272
MboI GATC 4 cut(s) 268, 973, 1220, 1270
MfeI CAATTG 1 cut(s) 47
MflI RGATCY 1 cut(s) 973
MhlI GDGCHC 3 cut(s) 174, 193, 803
MlsI TGGCCA 1 cut(s) 917
MluCI AATT 4 cut(s) 47, 391, 966, 1394
MluNI TGGCCA 1 cut(s) 917
MlyI GAGTC 3 cut(s) 72, 256, 1399
MmeI TCCRAC 2 cut(s) 296, 360
Mox20I TGGCCA 1 cut(s) 917
Mph1103I ATGCAT 1 cut(s) 1200
MscI TGGCCA 1 cut(s) 917
MseI TTAA 4 cut(s) 153, 183, 1179, 1491
MslI CAYNNNNRTG 3 cut(s) 240, 345, 983
Msp20I TGGCCA 1 cut(s) 917
MspCI CTTAAG 1 cut(s) 1490
MspI CCGG 2 cut(s) 287, 1084
MspR9I CCNGG 2 cut(s) 892, 1085
MunI CAATTG 1 cut(s) 47
MvaI CCWGG 1 cut(s) 892
MvnI CGCG 1 cut(s) 125
MwoI GCNNNNNNNGC 9 cut(s) 49, 292, 869, 1124, 1133, 1286, 1433, 1439, 1454
NciI CCSGG 1 cut(s) 1085
NdeII GATC 4 cut(s) 268, 973, 1220, 1270
NlaIII CATG 6 cut(s) 134, 239, 500, 563, 633, 1202
NlaIV GGNNCC 4 cut(s) 173, 291, 303, 801
NmuCI GTSAC 4 cut(s) 338, 555, 583, 782
NsiI ATGCAT 1 cut(s) 1200
NspI RCATGY 1 cut(s) 563
PagI TCATGA 1 cut(s) 130
PciI ACATGT 1 cut(s) 559
PcsI WCGNNNNNNNCGW 1 cut(s) 199
PfeI GAWTC 5 cut(s) 626, 755, 816, 1063, 1151
PkrI GCNGC 7 cut(s) 294, 488, 1120, 1135, 1236, 1384, 1435
PleI GAGTC 3 cut(s) 71, 256, 1399
PpsI GAGTC 3 cut(s) 71, 256, 1399
PpuMI RGGWCCY 1 cut(s) 991
PscI ACATGT 1 cut(s) 559
PshBI ATTAAT 1 cut(s) 1179
Psp5II RGGWCCY 1 cut(s) 991
Psp6I CCWGG 1 cut(s) 890
PspEI GGTNACC 1 cut(s) 926
PspGI CCWGG 1 cut(s) 890
PspN4I GGNNCC 4 cut(s) 173, 291, 303, 801
PspOMI GGGCCC 1 cut(s) 799
PspPI GGNCC 3 cut(s) 799, 800, 991
PspPPI RGGWCCY 1 cut(s) 991
PstNI CAGNNNCTG 3 cut(s) 587, 860, 1427
PsuI RGATCY 1 cut(s) 973
RsaI GTAC 1 cut(s) 478
RsaNI GTAC 1 cut(s) 477
RseI CAYNNNNRTG 3 cut(s) 240, 345, 983
SaqAI TTAA 4 cut(s) 153, 183, 1179, 1491
SatI GCNGC 7 cut(s) 293, 487, 1119, 1134, 1235, 1383, 1434
Sau3AI GATC 4 cut(s) 268, 973, 1220, 1270
Sau96I GGNCC 3 cut(s) 799, 800, 991
SchI GAGTC 3 cut(s) 72, 256, 1399
ScrFI CCNGG 2 cut(s) 892, 1085
SduI GDGCHC 3 cut(s) 174, 193, 803
SfaNI GCATC 4 cut(s) 148, 855, 962, 1457
SinI GGWCC 1 cut(s) 991
SmiMI CAYNNNNRTG 3 cut(s) 240, 345, 983
SmlI CTYRAG 1 cut(s) 1490
SmoI CTYRAG 1 cut(s) 1490
Sse9I AATT 4 cut(s) 47, 391, 966, 1394
SsiI CCGC 2 cut(s) 293, 487
SspI AATATT 1 cut(s) 574
SspMI CTAG 2 cut(s) 26, 296
StyD4I CCNGG 2 cut(s) 890, 1083
TaaI ACNGT 1 cut(s) 316
TaiI ACGT 2 cut(s) 190, 1105
TaqI TCGA 3 cut(s) 323, 469, 1273
TasI AATT 4 cut(s) 47, 391, 966, 1394
TauI GCSGC 2 cut(s) 295, 489
TfiI GAWTC 5 cut(s) 626, 755, 816, 1063, 1151
Tru1I TTAA 4 cut(s) 153, 183, 1179, 1491
Tru9I TTAA 4 cut(s) 153, 183, 1179, 1491
TscAI CASTG 3 cut(s) 349, 528, 592
TseFI GTSAC 4 cut(s) 338, 555, 583, 782
TseI GCWGC 5 cut(s) 1118, 1133, 1234, 1382, 1433
Tsp45I GTSAC 4 cut(s) 338, 555, 583, 782
TspDTI ATGAA 3 cut(s) 119, 804, 1314
TspRI CASTG 3 cut(s) 349, 528, 592
Vha464I CTTAAG 1 cut(s) 1490
VpaK11BI GGWCC 1 cut(s) 991
VspI ATTAAT 1 cut(s) 1179
XbaI TCTAGA 1 cut(s) 25
XceI RCATGY 1 cut(s) 563
XmiI GTMKAC 1 cut(s) 533
XspI CTAG 2 cut(s) 26, 296
Zsp2I ATGCAT 1 cut(s) 1200
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.