FvH4_2g41350

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0016102
Physical Location & Seq
Forward (+)
29257396 .. 29259817
2422 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g41350.t1

Sequence Viewer

Length: 1467 bp
ATGGGAAGCGAGGACGAGAGGGTTCTGGAGAACCTGCTAGAGATTCAGTTGCAGGAGCAAAGAGACTCTCTTGCAACCCTCAACGACGCCTTAGCCTCCGACCCCACCAATCCCGAGCTCCGCGCTCTTCAAGAGGAGGTTATTCAGGCAATCAAAGATGCTGAGGAAGGGCTTCTGCACCTAAAACGTGCAAGGTTATTACGAGAAGTCGATTCAGCTCTGGCTCCTTCTCATCATGCCAGTAAGGATGCTAAGGCAGAGACTCTTGATCCAACGCAGCCTCTTGAGGAACCAAGCTACAGTGTTGGATCAAAGTGTAGGTTCCGTCACTCTGATGGACGTTGGTACAATGGTCAAGTTATAGGACTGGATGCTTCTAACAATGCAAAGATTGCTTTCCTCACTCCTACTTCTGAAAATATGCTGATTTGCAAATTCTTTCTACAACAACGATGTCGATTTGCTAGCAACTGCCGCTTATCACATGGAGTTGATGTGCCACTCTCCTCTCTGAAGATGTATACCCCAACTATGTGGGAGGAGTCACTAGTAGGGTCAAGTATTTGGGCGGCCTCAGACGGTGAAGATGGTGTTTGGAGGAAAGCTGAACTTGAATCATGGGATGGTTTACTTGGGGTTGGAAGAGTTGTTTTCCAAGATGATGGAAGCTCTGCAAATCTTGGGGAAGAATCTATAACATTATCTGAGTTTGCTCAAATGAGTGATGAAGAAGATTCTAGCTCAGAAAACTCTGATTATAGTGAGTATGAAGATGAGGCCCCTCAGGGTGTAGGATTTCTTGAAAGCACCCTACTACAGAGGGGCATTCAGACTGAAACGAGCATATTTGCTAAGTGGGAGAACCACACCCGTGGTATTGCATCCAAGATGATGGCCAATATGGGTTACCTTGAAGGGACAGGTCTAGGCGCATCTGGGCAGGGTATTGTAGATCCCATCTCTGTGAAGGTCCTTCCACCAAAGCAATCTCTTGATCATGCAGTGGAATCTTGTGAAAAGGAAGAGGGTGAAGGGACTCAAGGAAAGAAGCGTAGCAGAGGTGGTAAAAGAAAACGTGACAAGAAGTTTGCTGCATTGACAAGAGCAGCGAAAGAAGTGGAGTCAACACCTGATATGTTTAGTTTTATTAATAGCCAACTTGCTATTCATGGTGAAGCTTCAAACGGTGGAACATCAAAGAAGCAGAACAAAGGGTCAGGGGAGGGGAAGAAAGTTGATAGGCGGGATTTGGTGGCCTACGAGGATGAAGTGAAGGAGCTGAAGATGCGAGTAGGAAAACTTGAAGAGATGGTGAGTAGAAACAAAAAAGAGAAGGTGGTTTATGAAGCTGCAATGAGAAAATTGATTGAAACTCGCAAAGTCTTAGCAGAGGCGGAGACAGCTCAGGCTTCGGCATCAAATGCGGTTGTCAGTAGAGAAAAAGAGAAGAGATGGCTTAAGTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
G-patch zf-CCCH

Protein Analysis

489

Amino Acids

54.0

Weight (kDa)

5.29

Isoelectric Point (pI)

42.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
G-patch PF01585 290 - 332 9.6e-14 G-patch domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016102)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G24830
fragaria_vesca FvH4_2g41350
malus_domestica MD08G1051900.v1.1
prunus_persica Prupe.1G396900_v2.0.a1
pyrus_communis pycom08g04340
rosa_chinensis RchiOBHm_Chr6g0299181
rosa_laevigata RLG00000011456
rosa_multiflora Rmu_sc0001434.1_g000014
rosa_roxburghii Rroxscaffold_7G00168940
rosa_rugosa Rorug06G0286000
rosa_samantha Rh6AG396900 Rh6BG405600 Rh6CG411700 Rh6DG398400
rosa_wichuraiana Rw6G034760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 42
AccI GTMKAC 1 cut(s) 521
AccII CGCG 1 cut(s) 123
AciI CCGC 6 cut(s) 121, 475, 569, 1243, 1394, 1424
AclWI GGATC 3 cut(s) 263, 316, 947
AcoI YGGCCR 1 cut(s) 894
AcsI RAATTY 1 cut(s) 434
AcuI CTGAAG 2 cut(s) 533, 1301
AcyI GRCGYC 1 cut(s) 87
AfaI GTAC 1 cut(s) 347
AflII CTTAAG 1 cut(s) 1457
AgsI TTSAA 7 cut(s) 131, 614, 803, 914, 1182, 1304, 1370
AhlI ACTAGT 1 cut(s) 547
AjuI GAANNNNNNNTTGG 2 cut(s) 1149, 1181
AleI CACNNNNGTG 1 cut(s) 870
Alw21I GWGCWC 1 cut(s) 120
Alw26I GTCTC 3 cut(s) 57, 254, 1391
AlwI GGATC 3 cut(s) 263, 316, 947
Ama87I CYCGRG 1 cut(s) 113
AoxI GGCC 4 cut(s) 570, 777, 894, 1254
ApeKI GCWGC 4 cut(s) 277, 1091, 1106, 1349
ApoI RAATTY 1 cut(s) 434
ArsI GACNNNNNNTTYG 2 cut(s) 1070, 1102
AseI ATTAAT 1 cut(s) 1149
Asp700I GAANNNNTTC 1 cut(s) 171
AspLEI GCGC 2 cut(s) 125, 932
AspS9I GGNCC 2 cut(s) 778, 970
AsuHPI GGTGA 4 cut(s) 593, 1040, 1184, 1324
AsuNHI GCTAGC 1 cut(s) 464
AvaI CYCGRG 1 cut(s) 113
AvaII GGWCC 1 cut(s) 970
AxyI CCTNAGG 1 cut(s) 783
BaeI ACNNNNGTAYC 2 cut(s) 337, 370
BalI TGGCCA 1 cut(s) 896
BanII GRGCYC 1 cut(s) 120
Bbv12I GWGCWC 1 cut(s) 120
BbvCI CCTCAGC 1 cut(s) 162
BbvI GCAGC 4 cut(s) 289, 1078, 1118, 1336
BccI CCATC 8 cut(s) 329, 581, 617, 656, 886, 965, 1303, 1446
BclI TGATCA 1 cut(s) 994
BcoDI GTCTC 3 cut(s) 57, 254, 1391
BcuI ACTAGT 1 cut(s) 547
BfaI CTAG 5 cut(s) 38, 465, 548, 738, 926
BfmI CTRYAG 2 cut(s) 298, 815
BfrI CTTAAG 1 cut(s) 1457
BfuAI ACCTGC 1 cut(s) 42
BisI GCNGC 6 cut(s) 278, 475, 570, 1092, 1107, 1350
BlsI GCNGC 6 cut(s) 279, 476, 571, 1093, 1108, 1351
Bme18I GGWCC 1 cut(s) 970
BmeT110I CYCGRG 1 cut(s) 113
BmgT120I GGNCC 2 cut(s) 778, 970
BmiI GGNNCC 4 cut(s) 225, 291, 323, 780
BmsI GCATC 7 cut(s) 148, 238, 361, 890, 941, 1275, 1424
BmtI GCTAGC 1 cut(s) 468
BpmI CTGGAG 1 cut(s) 47
Bpu10I CCTNAGC 4 cut(s) 91, 162, 252, 1404
BpuEI CTTGAG 2 cut(s) 305, 1023
BsaHI GRCGYC 1 cut(s) 87
BsaJI CCNNGG 1 cut(s) 871
BsaXI ACNNNNNCTCC 2 cut(s) 480, 510
Bse1I ACTGG 2 cut(s) 240, 372
Bse21I CCTNAGG 1 cut(s) 783
Bse3DI GCAATG 1 cut(s) 1359
BseDI CCNNGG 1 cut(s) 871
BseGI GGATG 5 cut(s) 253, 376, 628, 881, 1270
BseMI GCAATG 1 cut(s) 1359
BseMII CTCAG 6 cut(s) 153, 588, 696, 756, 797, 1418
BseNI ACTGG 2 cut(s) 240, 372
BseRI GAGGAG 3 cut(s) 149, 496, 554
BseXI GCAGC 4 cut(s) 289, 1078, 1118, 1336
BsgI GTGCAG 1 cut(s) 161
Bsh1236I CGCG 1 cut(s) 123
BshFI GGCC 4 cut(s) 572, 779, 896, 1256
BsiHKAI GWGCWC 1 cut(s) 120
BsiHKCI CYCGRG 1 cut(s) 113
BslFI GGGAC 2 cut(s) 931, 1048
BsmAI GTCTC 3 cut(s) 57, 254, 1391
BsmFI GGGAC 2 cut(s) 931, 1048
BsmI GAATGC 1 cut(s) 825
BsnI GGCC 4 cut(s) 572, 779, 896, 1256
BsoBI CYCGRG 1 cut(s) 113
Bsp1286I GDGCHC 1 cut(s) 120
Bsp143I GATC 4 cut(s) 268, 308, 952, 994
BspACI CCGC 6 cut(s) 121, 475, 569, 1243, 1394, 1424
BspANI GGCC 4 cut(s) 572, 779, 896, 1256
BspCNI CTCAG 6 cut(s) 154, 587, 697, 755, 796, 1417
BspFNI CGCG 1 cut(s) 123
BspLI GGNNCC 4 cut(s) 225, 291, 323, 780
BspMI ACCTGC 1 cut(s) 42
BspOI GCTAGC 1 cut(s) 468
BspPI GGATC 3 cut(s) 263, 316, 947
BspQI GCTCTTC 1 cut(s) 132
BspTI CTTAAG 1 cut(s) 1457
BsrDI GCAATG 1 cut(s) 1359
BsrI ACTGG 2 cut(s) 240, 372
BssECI CCNNGG 1 cut(s) 871
BssMI GATC 4 cut(s) 268, 308, 952, 994
BssNAI GTATAC 1 cut(s) 522
BssNI GRCGYC 1 cut(s) 87
Bst1107I GTATAC 1 cut(s) 522
Bst4CI ACNGT 3 cut(s) 302, 581, 1187
Bst6I CTCTTC 5 cut(s) 132, 637, 1017, 1299, 1442
BstACI GRCGYC 1 cut(s) 87
BstAFI CTTAAG 1 cut(s) 1457
BstAPI GCANNNNNTGC 2 cut(s) 392, 1421
BstC8I GCNNGC 1 cut(s) 466
BstDSI CCRYGG 1 cut(s) 871
BstEII GGTNACC 1 cut(s) 905
BstF5I GGATG 5 cut(s) 253, 376, 628, 881, 1270
BstFNI CGCG 1 cut(s) 123
BstHHI GCGC 2 cut(s) 125, 932
BstKTI GATC 4 cut(s) 271, 311, 955, 997
BstMAI GTCTC 3 cut(s) 57, 254, 1391
BstMBI GATC 4 cut(s) 268, 308, 952, 994
BstMWI GCNNNNNNNGC 5 cut(s) 392, 474, 1285, 1400, 1421
BstPI GGTNACC 1 cut(s) 905
BstSFI CTRYAG 2 cut(s) 298, 815
BstUI CGCG 1 cut(s) 123
BstV1I GCAGC 4 cut(s) 289, 1078, 1118, 1336
BstX2I RGATCY 1 cut(s) 952
BstXI CCANNNNNNTGG 4 cut(s) 534, 662, 872, 892
BstYI RGATCY 1 cut(s) 952
BstZ17I GTATAC 1 cut(s) 522
Bsu36I CCTNAGG 1 cut(s) 783
BsuRI GGCC 4 cut(s) 572, 779, 896, 1256
BtgI CCRYGG 1 cut(s) 871
BtsCI GGATG 5 cut(s) 253, 376, 628, 881, 1270
BtsI GCAGTG 1 cut(s) 1008
BtsIMutI CAGTG 2 cut(s) 307, 1008
BveI ACCTGC 1 cut(s) 42
Cac8I GCNNGC 1 cut(s) 466
CfoI GCGC 2 cut(s) 125, 932
Cfr13I GGNCC 2 cut(s) 778, 970
CseI GACGC 1 cut(s) 95
Csp6I GTAC 1 cut(s) 346
CviAII CATG 5 cut(s) 236, 485, 618, 998, 1169
CviQI GTAC 1 cut(s) 346
DpnI GATC 4 cut(s) 270, 310, 954, 996
DpnII GATC 4 cut(s) 268, 308, 952, 994
EaeI YGGCCR 1 cut(s) 894
Eam1104I CTCTTC 5 cut(s) 132, 637, 1017, 1299, 1442
EarI CTCTTC 5 cut(s) 132, 637, 1017, 1299, 1442
EciI GGCGGA 1 cut(s) 1409
Ecl136II GAGCTC 1 cut(s) 118
Eco24I GRGCYC 1 cut(s) 120
Eco47I GGWCC 1 cut(s) 970
Eco53kI GAGCTC 1 cut(s) 118
Eco57I CTGAAG 2 cut(s) 533, 1301
Eco81I CCTNAGG 1 cut(s) 783
Eco88I CYCGRG 1 cut(s) 113
Eco91I GGTNACC 1 cut(s) 905
EcoICRI GAGCTC 1 cut(s) 118
EcoO109I RGGNCCY 2 cut(s) 778, 970
EcoO65I GGTNACC 1 cut(s) 905
EcoT38I GRGCYC 1 cut(s) 120
FaeI CATG 5 cut(s) 239, 488, 621, 1001, 1172
FalI AAGNNNNNCTT 2 cut(s) 594, 626
FaqI GGGAC 2 cut(s) 931, 1048
FatI CATG 5 cut(s) 235, 484, 617, 997, 1168
FauI CCCGC 1 cut(s) 1236
FbaI TGATCA 1 cut(s) 994
FblI GTMKAC 1 cut(s) 521
Fnu4HI GCNGC 6 cut(s) 278, 475, 570, 1092, 1107, 1350
FokI GGATG 5 cut(s) 260, 383, 635, 868, 1277
FriOI GRGCYC 1 cut(s) 120
Fsp4HI GCNGC 6 cut(s) 278, 475, 570, 1092, 1107, 1350
FspBI CTAG 5 cut(s) 38, 465, 548, 738, 926
GlaI GCGC 2 cut(s) 124, 931
GluI GCNGC 6 cut(s) 278, 475, 570, 1092, 1107, 1350
GsuI CTGGAG 1 cut(s) 47
HaeIII GGCC 4 cut(s) 572, 779, 896, 1256
HgaI GACGC 1 cut(s) 95
HhaI GCGC 2 cut(s) 125, 932
Hin1I GRCGYC 1 cut(s) 87
Hin1II CATG 5 cut(s) 239, 488, 621, 1001, 1172
Hin6I GCGC 2 cut(s) 123, 930
HinP1I GCGC 2 cut(s) 123, 930
HincII GTYRAC 1 cut(s) 1125
HindII GTYRAC 1 cut(s) 1125
HindIII AAGCTT 1 cut(s) 1176
HphI GGTGA 4 cut(s) 593, 1040, 1184, 1324
Hpy166II GTNNAC 3 cut(s) 522, 629, 1125
Hpy188I TCNGA 9 cut(s) 100, 334, 415, 513, 577, 706, 745, 754, 831
Hpy188III TCNNGA 7 cut(s) 26, 113, 131, 266, 284, 800, 992
Hpy8I GTNNAC 3 cut(s) 522, 629, 1125
Hpy99I CGWCG 1 cut(s) 89
HpyAV CCTTC 8 cut(s) 161, 237, 908, 961, 983, 1025, 1267, 1327
HpyCH4III ACNGT 3 cut(s) 302, 581, 1187
HpyCH4IV ACGT 3 cut(s) 187, 340, 1075
HpyF10VI GCNNNNNNNGC 5 cut(s) 392, 474, 1285, 1400, 1421
HpySE526I ACGT 3 cut(s) 187, 340, 1075
Hsp92I GRCGYC 1 cut(s) 87
Hsp92II CATG 5 cut(s) 239, 488, 621, 1001, 1172
HspAI GCGC 2 cut(s) 123, 930
Ksp22I TGATCA 1 cut(s) 994
Kzo9I GATC 4 cut(s) 268, 308, 952, 994
LguI GCTCTTC 1 cut(s) 132
LmnI GCTCC 4 cut(s) 55, 123, 229, 1276
Lsp1109I GCAGC 4 cut(s) 289, 1078, 1118, 1336
LweI GCATC 7 cut(s) 148, 238, 361, 890, 941, 1275, 1424
MaeI CTAG 5 cut(s) 38, 465, 548, 738, 926
MaeII ACGT 3 cut(s) 187, 340, 1075
MaeIII GTNAC 4 cut(s) 326, 543, 905, 1076
MalI GATC 4 cut(s) 270, 310, 954, 996
MboI GATC 4 cut(s) 268, 308, 952, 994
MflI RGATCY 1 cut(s) 952
MhlI GDGCHC 1 cut(s) 120
MlsI TGGCCA 1 cut(s) 896
MluCI AATT 2 cut(s) 434, 1361
MluNI TGGCCA 1 cut(s) 896
MlyI GAGTC 5 cut(s) 59, 256, 551, 1030, 1130
MmeI TCCRAC 4 cut(s) 123, 286, 296, 619
Mox20I TGGCCA 1 cut(s) 896
MroXI GAANNNNTTC 1 cut(s) 171
MscI TGGCCA 1 cut(s) 896
MseI TTAA 2 cut(s) 1149, 1458
MslI CAYNNNNRTG 3 cut(s) 333, 870, 962
Msp20I TGGCCA 1 cut(s) 896
MspCI CTTAAG 1 cut(s) 1457
Mva1269I GAATGC 1 cut(s) 825
MvnI CGCG 1 cut(s) 123
MwoI GCNNNNNNNGC 5 cut(s) 392, 474, 1285, 1400, 1421
NdeII GATC 4 cut(s) 268, 308, 952, 994
NheI GCTAGC 1 cut(s) 464
NlaIII CATG 5 cut(s) 239, 488, 621, 1001, 1172
NlaIV GGNNCC 4 cut(s) 225, 291, 323, 780
NmuCI GTSAC 3 cut(s) 326, 543, 1076
OliI CACNNNNGTG 1 cut(s) 870
PciSI GCTCTTC 1 cut(s) 132
PctI GAATGC 1 cut(s) 825
PdmI GAANNNNTTC 1 cut(s) 171
PfeI GAWTC 6 cut(s) 43, 212, 614, 689, 734, 1007
PkrI GCNGC 6 cut(s) 279, 476, 571, 1093, 1108, 1351
PleI GAGTC 5 cut(s) 59, 256, 550, 1030, 1129
PpsI GAGTC 5 cut(s) 59, 256, 550, 1030, 1129
PpuMI RGGWCCY 1 cut(s) 970
PshBI ATTAAT 1 cut(s) 1149
Psp124BI GAGCTC 1 cut(s) 120
Psp5II RGGWCCY 1 cut(s) 970
PspEI GGTNACC 1 cut(s) 905
PspN4I GGNNCC 4 cut(s) 225, 291, 323, 780
PspPI GGNCC 2 cut(s) 778, 970
PspPPI RGGWCCY 1 cut(s) 970
PsuI RGATCY 1 cut(s) 952
RsaI GTAC 1 cut(s) 347
RsaNI GTAC 1 cut(s) 346
RseI CAYNNNNRTG 3 cut(s) 333, 870, 962
SacI GAGCTC 1 cut(s) 120
SapI GCTCTTC 1 cut(s) 132
SaqAI TTAA 2 cut(s) 1149, 1458
SatI GCNGC 6 cut(s) 278, 475, 570, 1092, 1107, 1350
Sau3AI GATC 4 cut(s) 268, 308, 952, 994
Sau96I GGNCC 2 cut(s) 778, 970
SchI GAGTC 5 cut(s) 59, 256, 551, 1030, 1130
SduI GDGCHC 1 cut(s) 120
SfaNI GCATC 7 cut(s) 148, 238, 361, 890, 941, 1275, 1424
SfcI CTRYAG 2 cut(s) 298, 815
SinI GGWCC 1 cut(s) 970
SmiMI CAYNNNNRTG 3 cut(s) 333, 870, 962
SmlI CTYRAG 3 cut(s) 284, 1038, 1457
SmoI CTYRAG 3 cut(s) 284, 1038, 1457
SpeI ACTAGT 1 cut(s) 547
Sse9I AATT 2 cut(s) 434, 1361
SsiI CCGC 6 cut(s) 121, 475, 569, 1243, 1394, 1424
SspMI CTAG 5 cut(s) 38, 465, 548, 738, 926
SstI GAGCTC 1 cut(s) 120
TaaI ACNGT 3 cut(s) 302, 581, 1187
TaiI ACGT 3 cut(s) 190, 343, 1078
TaqI TCGA 2 cut(s) 210, 457
TasI AATT 2 cut(s) 434, 1361
TauI GCSGC 2 cut(s) 477, 572
TfiI GAWTC 6 cut(s) 43, 212, 614, 689, 734, 1007
Tru1I TTAA 2 cut(s) 1149, 1458
Tru9I TTAA 2 cut(s) 1149, 1458
TscAI CASTG 2 cut(s) 307, 1008
TseFI GTSAC 3 cut(s) 326, 543, 1076
TseI GCWGC 4 cut(s) 277, 1091, 1106, 1349
Tsp45I GTSAC 3 cut(s) 326, 543, 1076
TspDTI ATGAA 5 cut(s) 741, 783, 1157, 1281, 1359
TspGWI ACGGA 1 cut(s) 314
TspRI CASTG 2 cut(s) 307, 1008
Vha464I CTTAAG 1 cut(s) 1457
VpaK11BI GGWCC 1 cut(s) 970
VspI ATTAAT 1 cut(s) 1149
XapI RAATTY 1 cut(s) 434
XmiI GTMKAC 1 cut(s) 521
XmnI GAANNNNTTC 1 cut(s) 171
XspI CTAG 5 cut(s) 38, 465, 548, 738, 926
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.