MD08G1051900.v1.1

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
OG0016102
Physical Location & Seq
Reverse (-)
4088954 .. 4090736
1783 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1051900.v1.1.491

Sequence Viewer

Length: 1077 bp
ATGATGATTTGCAAGTTCTTTCTTCAACAACGATGTCGATTTGGTACCAACTGCCGCTTATCACATGGAGTTGATGTCCCACTTTCCTCACTGAGAAAGTATATCCCGACAATATGGGAGCAGTCACTGGTCGGGTCTAATATTTGGGCAGTATCAGATAGTAAAACTGGTGTGTGGAGGGAAGCTGAACTTGAATCATGGGACGGTGCACTTGGGGTTGGAAAAGTTGTATTCCGAGATGATGGAAGCTCTGCAGATCTTGGGGAGGACGCTATAACATTGTCCGAGCATGCTCAGATGAGCGATGAAGAAGAAAGTGATTCAAGCTCTGACCAATCTGATTCTAGTGACTATGAAGATGAAACCCCACAGGGTTTAGGATTTCTTGAAAGCACAATCCTCCAGAGGGGTATTCAGACAGAAACTGCCATATTTGCAAAGTGGGAGAACCACACCCGTGGCATAGCGTCCAGGATGATGGCCAACATGGGTTACCTTGAAGGAACTGGTCTAGGTGCATCTGGCCAGGGAATTATAGATCCCATCTCCGTGAAGGTCCTTCCGCCAAAGCAATCTCTCGATCATGCAGTCAAAACCCGTGAAGGTGAAGAGAGTAAAGAGAGTAAAGAGAGCAAAGAGAATCAAGGAAAGAAGCGTAGCAGGGGTGGTAAGAGGAAGCGTGAAAAGAAGTTTGCAGCACTGGCAAGAGCAGCAAAAGAAGAAGAGGAATCAACACCAGATGTCTTTAGTCTTATTAATAGCCAACTTGCAAAGCACGGTGAAGCATTGAATGGTAAATCAGCGAAGAAGCAGCAGAGCAATGGATCAGGGGAGGGAAAGAAAGTTGATAGGCGGGCTTTGGTTGCTTACGATGATGAAGTGAAGGACTTGAAGGCGCGAGTTGGGAAGCTTGAAGAAATGGCAATTAGAAACAAAAATGAGAAGGTGGTTTATGATGCTGCGATGAGGAAATTGACGGAGACTCGCAACGCTTTGGCACAGGCAGAGGCCGCTCAAGCGTCTGCGTCGAATGCGGTTGTCAGTAAGGAAAAAGAGAAGAGATGGCTTAAATTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
G-patch zf-CCCH

Protein Analysis

359

Amino Acids

39.5

Weight (kDa)

6.59

Isoelectric Point (pI)

42.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CCCH_4 PF18044 3 - 22 3.1e-07 CCCH-type zinc finger
G-patch PF01585 152 - 194 1.1e-13 G-patch domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016102)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G24830
fragaria_vesca FvH4_2g41350
malus_domestica MD08G1051900.v1.1
prunus_persica Prupe.1G396900_v2.0.a1
pyrus_communis pycom08g04340
rosa_chinensis RchiOBHm_Chr6g0299181
rosa_laevigata RLG00000011456
rosa_multiflora Rmu_sc0001434.1_g000014
rosa_roxburghii Rroxscaffold_7G00168940
rosa_rugosa Rorug06G0286000
rosa_samantha Rh6AG396900 Rh6BG405600 Rh6CG411700 Rh6DG398400
rosa_wichuraiana Rw6G034760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 44
AccB1I GGYRCC 1 cut(s) 44
AccBSI CCGCTC 1 cut(s) 1013
AccII CGCG 1 cut(s) 898
AciI CCGC 5 cut(s) 55, 563, 853, 1011, 1034
AclWI GGATC 2 cut(s) 533, 832
AcoI YGGCCR 2 cut(s) 480, 523
AcsI RAATTY 1 cut(s) 1070
AfaI GTAC 1 cut(s) 46
AfiI CCNNNNNNNGG 1 cut(s) 406
AgsI TTSAA 8 cut(s) 26, 194, 324, 389, 500, 790, 892, 914
AjnI CCWGG 2 cut(s) 470, 525
AleI CACNNNNGTG 1 cut(s) 456
AluBI AGCT 4 cut(s) 185, 249, 327, 910
AluI AGCT 4 cut(s) 185, 249, 327, 910
Alw21I GWGCWC 1 cut(s) 211
Alw26I GTCTC 1 cut(s) 974
Alw44I GTGCAC 1 cut(s) 207
AlwI GGATC 2 cut(s) 533, 832
AlwNI CAGNNNCTG 2 cut(s) 127, 425
AoxI GGCC 3 cut(s) 480, 523, 1008
ApaLI GTGCAC 1 cut(s) 207
ApeKI GCWGC 4 cut(s) 695, 710, 811, 959
ApoI RAATTY 1 cut(s) 1070
AseI ATTAAT 1 cut(s) 756
Asp718I GGTACC 1 cut(s) 44
AspLEI GCGC 1 cut(s) 898
AspS9I GGNCC 1 cut(s) 556
AsuHPI GGTGA 2 cut(s) 617, 791
AvaII GGWCC 1 cut(s) 556
BaeGI GKGCMC 1 cut(s) 211
BalI TGGCCA 2 cut(s) 482, 525
BanI GGYRCC 1 cut(s) 44
Bbv12I GWGCWC 1 cut(s) 211
BbvI GCAGC 4 cut(s) 707, 722, 823, 946
BccI CCATC 4 cut(s) 236, 472, 551, 1056
BciT130I CCWGG 2 cut(s) 472, 527
BcoDI GTCTC 1 cut(s) 974
BfaI CTAG 2 cut(s) 345, 512
BfmI CTRYAG 1 cut(s) 252
BglII AGATCT 1 cut(s) 256
BisI GCNGC 6 cut(s) 55, 696, 711, 812, 960, 1011
BlsI GCNGC 6 cut(s) 56, 697, 712, 813, 961, 1012
Bme1390I CCNGG 2 cut(s) 472, 527
Bme18I GGWCC 1 cut(s) 556
BmgT120I GGNCC 1 cut(s) 556
BmiI GGNNCC 1 cut(s) 46
BmrFI CCNGG 2 cut(s) 472, 527
BmsI GCATC 2 cut(s) 527, 946
BpmI CTGGAG 1 cut(s) 386
BpuEI CTTGAG 1 cut(s) 999
BsaJI CCNNGG 2 cut(s) 457, 526
BsaXI ACNNNNNCTCC 2 cut(s) 60, 90
Bsc4I CCNNNNNNNGG 1 cut(s) 406
Bse1I ACTGG 4 cut(s) 132, 172, 511, 705
Bse3DI GCAATG 1 cut(s) 826
BseBI CCWGG 2 cut(s) 472, 527
BseDI CCNNGG 2 cut(s) 457, 526
BseGI GGATG 1 cut(s) 480
BseLI CCNNNNNNNGG 1 cut(s) 406
BseMI GCAATG 1 cut(s) 826
BseMII CTCAG 2 cut(s) 83, 308
BseNI ACTGG 4 cut(s) 132, 172, 511, 705
BseSI GKGCMC 1 cut(s) 211
BseXI GCAGC 4 cut(s) 707, 722, 823, 946
Bsh1236I CGCG 1 cut(s) 898
BshFI GGCC 3 cut(s) 482, 525, 1010
BshNI GGYRCC 1 cut(s) 44
BsiHKAI GWGCWC 1 cut(s) 211
BslFI GGGAC 2 cut(s) 62, 215
BslI CCNNNNNNNGG 1 cut(s) 406
BsmAI GTCTC 1 cut(s) 974
BsmFI GGGAC 2 cut(s) 62, 215
BsmI GAATGC 1 cut(s) 1036
BsnI GGCC 3 cut(s) 482, 525, 1010
Bsp1286I GDGCHC 1 cut(s) 211
Bsp143I GATC 4 cut(s) 256, 538, 580, 824
BspACI CCGC 5 cut(s) 55, 563, 853, 1011, 1034
BspANI GGCC 3 cut(s) 482, 525, 1010
BspCNI CTCAG 2 cut(s) 84, 307
BspFNI CGCG 1 cut(s) 898
BspLI GGNNCC 1 cut(s) 46
BspMAI CTGCAG 1 cut(s) 256
BspPI GGATC 2 cut(s) 533, 832
BspT107I GGYRCC 1 cut(s) 44
BsrBI CCGCTC 1 cut(s) 1013
BsrDI GCAATG 1 cut(s) 826
BsrI ACTGG 4 cut(s) 132, 172, 511, 705
BssECI CCNNGG 2 cut(s) 457, 526
BssMI GATC 4 cut(s) 256, 538, 580, 824
Bst2UI CCWGG 2 cut(s) 472, 527
Bst4CI ACNGT 2 cut(s) 206, 779
Bst6I CTCTTC 3 cut(s) 603, 717, 1052
BstC8I GCNNGC 2 cut(s) 291, 855
BstDEI CTNAG 2 cut(s) 92, 294
BstDSI CCRYGG 1 cut(s) 457
BstEII GGTNACC 1 cut(s) 491
BstF5I GGATG 1 cut(s) 480
BstFNI CGCG 1 cut(s) 898
BstHHI GCGC 1 cut(s) 898
BstKTI GATC 4 cut(s) 259, 541, 583, 827
BstMAI GTCTC 1 cut(s) 974
BstMBI GATC 4 cut(s) 256, 538, 580, 824
BstMWI GCNNNNNNNGC 7 cut(s) 434, 701, 710, 863, 1010, 1016, 1031
BstNI CCWGG 2 cut(s) 472, 527
BstNSI RCATGY 1 cut(s) 293
BstPI GGTNACC 1 cut(s) 491
BstSCI CCNGG 2 cut(s) 470, 525
BstSFI CTRYAG 1 cut(s) 252
BstSLI GKGCMC 1 cut(s) 211
BstUI CGCG 1 cut(s) 898
BstV1I GCAGC 4 cut(s) 707, 722, 823, 946
BstX2I RGATCY 2 cut(s) 256, 538
BstXI CCANNNNNNTGG 2 cut(s) 458, 478
BstYI RGATCY 2 cut(s) 256, 538
BsuRI GGCC 3 cut(s) 482, 525, 1010
BtgI CCRYGG 1 cut(s) 457
BtgZI GCGATG 2 cut(s) 318, 977
BtsCI GGATG 1 cut(s) 480
BtsIMutI CAGTG 3 cut(s) 89, 125, 698
Cac8I GCNNGC 2 cut(s) 291, 855
CaiI CAGNNNCTG 2 cut(s) 127, 425
CfoI GCGC 1 cut(s) 898
Cfr13I GGNCC 1 cut(s) 556
CseI GACGC 4 cut(s) 278, 456, 1008, 1014
Csp6I GTAC 1 cut(s) 45
CviAII CATG 5 cut(s) 65, 198, 290, 487, 584
CviQI GTAC 1 cut(s) 45
DdeI CTNAG 2 cut(s) 92, 294
DpnI GATC 4 cut(s) 258, 540, 582, 826
DpnII GATC 4 cut(s) 256, 538, 580, 824
EaeI YGGCCR 2 cut(s) 480, 523
Eam1104I CTCTTC 3 cut(s) 603, 717, 1052
EarI CTCTTC 3 cut(s) 603, 717, 1052
EciI GGCGGA 1 cut(s) 552
Eco47I GGWCC 1 cut(s) 556
Eco91I GGTNACC 1 cut(s) 491
EcoO109I RGGNCCY 1 cut(s) 556
EcoO65I GGTNACC 1 cut(s) 491
EcoRII CCWGG 2 cut(s) 470, 525
FaeI CATG 5 cut(s) 68, 201, 293, 490, 587
FalI AAGNNNNNCTT 2 cut(s) 174, 206
FaqI GGGAC 2 cut(s) 62, 215
FatI CATG 5 cut(s) 64, 197, 289, 486, 583
FauI CCCGC 1 cut(s) 846
Fnu4HI GCNGC 6 cut(s) 55, 696, 711, 812, 960, 1011
FokI GGATG 1 cut(s) 487
Fsp4HI GCNGC 6 cut(s) 55, 696, 711, 812, 960, 1011
FspBI CTAG 2 cut(s) 345, 512
GlaI GCGC 1 cut(s) 897
GluI GCNGC 6 cut(s) 55, 696, 711, 812, 960, 1011
GsuI CTGGAG 1 cut(s) 386
HaeIII GGCC 3 cut(s) 482, 525, 1010
HgaI GACGC 4 cut(s) 278, 456, 1008, 1014
HhaI GCGC 1 cut(s) 898
Hin1II CATG 5 cut(s) 68, 201, 293, 490, 587
Hin6I GCGC 1 cut(s) 896
HinP1I GCGC 1 cut(s) 896
HindIII AAGCTT 1 cut(s) 908
HinfI GANTC 6 cut(s) 194, 320, 341, 640, 728, 982
HphI GGTGA 2 cut(s) 617, 791
Hpy166II GTNNAC 1 cut(s) 209
Hpy188I TCNGA 7 cut(s) 157, 236, 286, 297, 331, 340, 417
Hpy188III TCNNGA 4 cut(s) 106, 386, 403, 578
Hpy8I GTNNAC 1 cut(s) 209
Hpy99I CGWCG 1 cut(s) 1030
HpyAV CCTTC 7 cut(s) 494, 547, 569, 596, 877, 886, 937
HpyCH4III ACNGT 2 cut(s) 206, 779
HpyCH4V TGCA 8 cut(s) 12, 209, 254, 437, 518, 587, 695, 770
HpyF10VI GCNNNNNNNGC 7 cut(s) 434, 701, 710, 863, 1010, 1016, 1031
HpyF3I CTNAG 2 cut(s) 92, 294
Hsp92II CATG 5 cut(s) 68, 201, 293, 490, 587
HspAI GCGC 1 cut(s) 896
KpnI GGTACC 1 cut(s) 48
Kzo9I GATC 4 cut(s) 256, 538, 580, 824
LmnI GCTCC 1 cut(s) 118
Lsp1109I GCAGC 4 cut(s) 707, 722, 823, 946
LweI GCATC 2 cut(s) 527, 946
MaeI CTAG 2 cut(s) 345, 512
MaeIII GTNAC 3 cut(s) 123, 347, 491
MalI GATC 4 cut(s) 258, 540, 582, 826
MbiI CCGCTC 1 cut(s) 1013
MboI GATC 4 cut(s) 256, 538, 580, 824
MflI RGATCY 2 cut(s) 256, 538
MhlI GDGCHC 1 cut(s) 211
MlsI TGGCCA 2 cut(s) 482, 525
MluCI AATT 4 cut(s) 531, 924, 971, 1070
MluNI TGGCCA 2 cut(s) 482, 525
MlyI GAGTC 1 cut(s) 976
MmeI TCCRAC 1 cut(s) 199
Mox20I TGGCCA 2 cut(s) 482, 525
MscI TGGCCA 2 cut(s) 482, 525
MseI TTAA 2 cut(s) 756, 1068
MslI CAYNNNNRTG 2 cut(s) 456, 548
Msp20I TGGCCA 2 cut(s) 482, 525
MspR9I CCNGG 2 cut(s) 472, 527
Mva1269I GAATGC 1 cut(s) 1036
MvaI CCWGG 2 cut(s) 472, 527
MvnI CGCG 1 cut(s) 898
MwoI GCNNNNNNNGC 7 cut(s) 434, 701, 710, 863, 1010, 1016, 1031
NdeII GATC 4 cut(s) 256, 538, 580, 824
NlaIII CATG 5 cut(s) 68, 201, 293, 490, 587
NlaIV GGNNCC 1 cut(s) 46
NmuCI GTSAC 2 cut(s) 123, 347
NspI RCATGY 1 cut(s) 293
OliI CACNNNNGTG 1 cut(s) 456
PaeI GCATGC 1 cut(s) 293
PctI GAATGC 1 cut(s) 1036
PfeI GAWTC 5 cut(s) 194, 320, 341, 640, 728
PfoI TCCNGGA 1 cut(s) 470
PkrI GCNGC 6 cut(s) 56, 697, 712, 813, 961, 1012
PleI GAGTC 1 cut(s) 976
PpsI GAGTC 1 cut(s) 976
PpuMI RGGWCCY 1 cut(s) 556
PshBI ATTAAT 1 cut(s) 756
Psp5II RGGWCCY 1 cut(s) 556
Psp6I CCWGG 2 cut(s) 470, 525
PspEI GGTNACC 1 cut(s) 491
PspGI CCWGG 2 cut(s) 470, 525
PspN4I GGNNCC 1 cut(s) 46
PspPI GGNCC 1 cut(s) 556
PspPPI RGGWCCY 1 cut(s) 556
PstI CTGCAG 1 cut(s) 256
PstNI CAGNNNCTG 2 cut(s) 127, 425
PsuI RGATCY 2 cut(s) 256, 538
RsaI GTAC 1 cut(s) 46
RsaNI GTAC 1 cut(s) 45
RseI CAYNNNNRTG 2 cut(s) 456, 548
SaqAI TTAA 2 cut(s) 756, 1068
SatI GCNGC 6 cut(s) 55, 696, 711, 812, 960, 1011
Sau3AI GATC 4 cut(s) 256, 538, 580, 824
Sau96I GGNCC 1 cut(s) 556
SchI GAGTC 1 cut(s) 976
ScrFI CCNGG 2 cut(s) 472, 527
SduI GDGCHC 1 cut(s) 211
SetI ASST 9 cut(s) 187, 251, 329, 498, 517, 558, 607, 912, 948
SfaNI GCATC 2 cut(s) 527, 946
SfcI CTRYAG 1 cut(s) 252
SinI GGWCC 1 cut(s) 556
SmiMI CAYNNNNRTG 2 cut(s) 456, 548
SmlI CTYRAG 1 cut(s) 1014
SmoI CTYRAG 1 cut(s) 1014
SphI GCATGC 1 cut(s) 293
Sse9I AATT 4 cut(s) 531, 924, 971, 1070
SsiI CCGC 5 cut(s) 55, 563, 853, 1011, 1034
SspI AATATT 1 cut(s) 142
SspMI CTAG 2 cut(s) 345, 512
StyD4I CCNGG 2 cut(s) 470, 525
TaaI ACNGT 2 cut(s) 206, 779
TaqI TCGA 3 cut(s) 37, 579, 1028
TasI AATT 4 cut(s) 531, 924, 971, 1070
TauI GCSGC 2 cut(s) 57, 1013
TfiI GAWTC 5 cut(s) 194, 320, 341, 640, 728
Tru1I TTAA 2 cut(s) 756, 1068
Tru9I TTAA 2 cut(s) 756, 1068
TscAI CASTG 3 cut(s) 96, 132, 705
TseFI GTSAC 2 cut(s) 123, 347
TseI GCWGC 4 cut(s) 695, 710, 811, 959
Tsp45I GTSAC 2 cut(s) 123, 347
TspDTI ATGAA 4 cut(s) 321, 369, 375, 891
TspGWI ACGGA 2 cut(s) 538, 992
TspRI CASTG 3 cut(s) 96, 132, 705
VneI GTGCAC 1 cut(s) 207
VpaK11BI GGWCC 1 cut(s) 556
VspI ATTAAT 1 cut(s) 756
XapI RAATTY 1 cut(s) 1070
XceI RCATGY 1 cut(s) 293
XspI CTAG 2 cut(s) 345, 512
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.