Rorug06G0286000

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0016102
Physical Location & Seq
Forward (+)
43623711 .. 43627395
3685 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0286000.1

Sequence Viewer

Length: 1341 bp
ATGGGTCAGGGAACTCCGGGCGGTTTGAACCGGCAAGGCCTACCGGGCGACCGAAAGCCCGACGGCAACGACAAGAAGGAGAAGAAGTTCGAGCCGGCGGCTCCGCCGGCCCGAGTGGGCCGCAAGCAGCGGAAACAGAAGGGTCCAGAAGCGGCGGCGAGGCTTCCGACGGTGACGCCGCTGACCAAGTGCAAGCTCCGACTACTGAAGCTGGAGCGGATTAAGGATTACCTGCTCATGGAGGAGGAGTTTGTGACGAACCAGGAGCGGCTTAAGCCTCAGGAGGAGAAGGCCGAGGAGGACAGATCTAAGGTCGACGATCTACGTGGCTCGCCCATGAGCGTCGGCAATCTCGAGGAGCTGATCGACGAGAACCACGCGATTGTTTCGTCGTCGGTGGGGCCCGAGTACTATGTGGGGATCCTCTCCTTTGTCGATAAGGACCAGTTGGAGCCTGGGTGCGCCATTTTGATGCACAATAAGGTGCTTTCTGTTGTTGGGCTTCTGCAAGATGAAGTTGATCCAATGGTTTCAGTAATGAAGGTTGAAAAAGCTCCGCTGGAGTCATATGCTGACATTGGTGGATTAGATGCCCAAATACAGGAGATTAAAGAAGCAGTTGAGCTCCCACTGACGCATCCTGAGCTGTATGAAGACATTGGCATCAGGCCTCCCAAGGGAGTCATATTGTATGGAGAGCCTGGAACTGGCAAGACCTTGCTTGCAAAGGCTGTGGCTAACTCAACATCAGCAACTTTCTTGCGTGTTGTTGGTAGTGAATTGATTCAAAAGTATCTGGGAGATGGTCCCAAGTTAGTGAGGGAGCTCTTTAGGGTTGCTGATGACCTCTCACCCTCGATTGTCTTCATTGATGAAATTGATGCAGTTGGTACAAAGAGGTACGATGCCCATTCAGGTGGTGAAAGGGAAATACAGAGGACCATGTTGGAGTTACTGAACCAATTGGATGGCTTTGACTCAAGAGGTGATGTCAAGGTGATTCTTGCAACAAACAGAATTGATAGTCTTGACCCAGCCTTGCTTCGACCAGGACGAATCGATAGAAAGATTGAATTTCCGCTTCCAGATATCAAAACAAGGAGGCGCATCTTCCAGATTCACACATCAAGGATGACATTGGCTGACGATGTTAACCTAGAAGAATTCGTCATGACTAAAGATGAGTTCTCTGGGGCTGATATAAAGGCTATATGCACTGAAGCTGGTCTGCTTGCATTGAGAGAGCGCCGAATGAAGGTGACACATGTGGACTTCAAGAAGGCCAAGGAGAAGGTTATGTTTAAGAAGAAGGAAGGTGTTCCAGAAGGACTTTACATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
G-patch zf-CCCH

Protein Analysis

446

Amino Acids

49.73

Weight (kDa)

5.91

Isoelectric Point (pI)

39.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Prot_ATP_ID_OB_C PF16450 115 - 169 3.9e-10 Proteasomal ATPase OB C-terminal domain
AAA PF00004 228 - 361 7.6e-42 ATPase family associated with various cellular activities (AAA)
AAA_lid_3 PF17862 383 - 427 1e-11 AAA+ lid domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016102)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G24830
fragaria_vesca FvH4_2g41350
malus_domestica MD08G1051900.v1.1
prunus_persica Prupe.1G396900_v2.0.a1
pyrus_communis pycom08g04340
rosa_chinensis RchiOBHm_Chr6g0299181
rosa_laevigata RLG00000011456
rosa_multiflora Rmu_sc0001434.1_g000014
rosa_roxburghii Rroxscaffold_7G00168940
rosa_rugosa Rorug06G0286000
rosa_samantha Rh6AG396900 Rh6BG405600 Rh6CG411700 Rh6DG398400
rosa_wichuraiana Rw6G034760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 240
AccBSI CCGCTC 2 cut(s) 217, 268
AccI GTMKAC 1 cut(s) 315
AccII CGCG 1 cut(s) 380
AclWI GGATC 3 cut(s) 415, 428, 515
AcsI RAATTY 2 cut(s) 1073, 1163
AcuI CTGAAG 2 cut(s) 227, 1239
AcyI GRCGYC 1 cut(s) 176
AfaI GTAC 3 cut(s) 410, 892, 902
AfiI CCNNNNNNNGG 5 cut(s) 238, 601, 677, 707, 1255
AflII CTTAAG 1 cut(s) 272
AflIII ACRYGT 2 cut(s) 1264, 1335
AgsI TTSAA 5 cut(s) 28, 548, 788, 1073, 1276
AjnI CCWGG 4 cut(s) 261, 454, 700, 1048
AloI GAACNNNNNNTCC 2 cut(s) 71, 103
AluBI AGCT 8 cut(s) 196, 211, 361, 554, 625, 646, 826, 1223
AluI AGCT 8 cut(s) 196, 211, 361, 554, 625, 646, 826, 1223
Alw21I GWGCWC 2 cut(s) 627, 828
AlwI GGATC 3 cut(s) 415, 428, 515
Ama87I CYCGRG 3 cut(s) 111, 353, 404
AoxI GGCC 7 cut(s) 37, 108, 118, 291, 401, 668, 1281
ApaI GGGCCC 1 cut(s) 405
ApeKI GCWGC 1 cut(s) 127
ApoI RAATTY 2 cut(s) 1073, 1163
Asp700I GAANNNNTTC 3 cut(s) 86, 783, 1317
AspLEI GCGC 3 cut(s) 464, 1107, 1248
AspS9I GGNCC 8 cut(s) 109, 118, 143, 401, 402, 442, 806, 939
AsuC2I CCSGG 2 cut(s) 18, 45
AsuHPI GGTGA 6 cut(s) 184, 843, 932, 998, 1009, 1270
AvaI CYCGRG 3 cut(s) 111, 353, 404
AvaII GGWCC 4 cut(s) 143, 442, 806, 939
AxyI CCTNAGG 1 cut(s) 279
BaeGI GKGCMC 1 cut(s) 405
BamHI GGATCC 1 cut(s) 420
BanII GRGCYC 3 cut(s) 405, 627, 828
BbsI GAAGAC 2 cut(s) 660, 856
Bbv12I GWGCWC 2 cut(s) 627, 828
BbvI GCAGC 1 cut(s) 139
BccI CCATC 2 cut(s) 797, 962
BceAI ACGGC 1 cut(s) 79
BciT130I CCWGG 4 cut(s) 263, 456, 702, 1050
BcnI CCSGG 2 cut(s) 18, 45
BfaI CTAG 1 cut(s) 1157
BfoI RGCGCY 1 cut(s) 1249
BfrI CTTAAG 1 cut(s) 272
BfuAI ACCTGC 1 cut(s) 240
BglI GCCNNNNNGGC 1 cut(s) 45
BglII AGATCT 1 cut(s) 305
BisI GCNGC 7 cut(s) 99, 121, 128, 153, 156, 179, 269
BlsI GCNGC 7 cut(s) 100, 122, 129, 154, 157, 180, 270
BmcAI AGTACT 1 cut(s) 410
Bme1390I CCNGG 6 cut(s) 18, 45, 263, 456, 702, 1050
Bme18I GGWCC 4 cut(s) 143, 442, 806, 939
BmeT110I CYCGRG 3 cut(s) 111, 353, 404
BmgT120I GGNCC 8 cut(s) 109, 118, 143, 401, 402, 442, 806, 939
BmiI GGNNCC 7 cut(s) 102, 144, 402, 403, 422, 453, 808
BmrFI CCNGG 6 cut(s) 18, 45, 263, 456, 702, 1050
BmsI GCATC 7 cut(s) 462, 580, 646, 672, 871, 895, 1116
BpiI GAAGAC 2 cut(s) 660, 856
BpmI CTGGAG 2 cut(s) 233, 581
Bpu10I CCTNAGC 1 cut(s) 642
BpuEI CTTGAG 1 cut(s) 964
BpuMI CCSGG 2 cut(s) 18, 45
Bsa29I ATCGAT 1 cut(s) 1059
BsaAI YACGTR 1 cut(s) 326
BsaHI GRCGYC 1 cut(s) 176
BsaJI CCNNGG 4 cut(s) 294, 455, 675, 1284
BsaXI ACNNNNNCTCC 6 cut(s) 71, 101, 233, 263, 443, 473
Bsc4I CCNNNNNNNGG 5 cut(s) 238, 601, 677, 707, 1255
Bse118I RCCGGY 3 cut(s) 30, 94, 106
Bse1I ACTGG 2 cut(s) 445, 712
Bse21I CCTNAGG 1 cut(s) 279
BseBI CCWGG 4 cut(s) 263, 456, 702, 1050
BseCI ATCGAT 1 cut(s) 1059
BseDI CCNNGG 4 cut(s) 294, 455, 675, 1284
BseGI GGATG 3 cut(s) 637, 973, 1137
BseLI CCNNNNNNNGG 5 cut(s) 238, 601, 677, 707, 1255
BseMII CTCAG 2 cut(s) 293, 633
BseNI ACTGG 2 cut(s) 445, 712
BseRI GAGGAG 5 cut(s) 257, 260, 299, 311, 371
BseSI GKGCMC 1 cut(s) 405
BseXI GCAGC 1 cut(s) 139
BseYI CCCAGC 1 cut(s) 1033
Bsh1236I CGCG 1 cut(s) 380
Bsh1285I CGRYCG 1 cut(s) 52
BshFI GGCC 7 cut(s) 39, 110, 120, 293, 403, 670, 1283
BshVI ATCGAT 1 cut(s) 1059
BsiEI CGRYCG 1 cut(s) 52
BsiHKAI GWGCWC 2 cut(s) 627, 828
BsiHKCI CYCGRG 3 cut(s) 111, 353, 404
BsiSI CCGG 5 cut(s) 17, 31, 44, 95, 107
BslFI GGGAC 1 cut(s) 792
BslI CCNNNNNNNGG 5 cut(s) 238, 601, 677, 707, 1255
BsmFI GGGAC 1 cut(s) 792
BsnI GGCC 7 cut(s) 39, 110, 120, 293, 403, 670, 1283
BsoBI CYCGRG 3 cut(s) 111, 353, 404
Bsp120I GGGCCC 1 cut(s) 401
Bsp1286I GDGCHC 3 cut(s) 405, 627, 828
Bsp143I GATC 5 cut(s) 305, 319, 363, 420, 520
BspANI GGCC 7 cut(s) 39, 110, 120, 293, 403, 670, 1283
BspCNI CTCAG 2 cut(s) 292, 634
BspDI ATCGAT 1 cut(s) 1059
BspFNI CGCG 1 cut(s) 380
BspHI TCATGA 1 cut(s) 1170
BspLI GGNNCC 7 cut(s) 102, 144, 402, 403, 422, 453, 808
BspMI ACCTGC 1 cut(s) 240
BspPI GGATC 3 cut(s) 415, 428, 515
BspTI CTTAAG 1 cut(s) 272
BsrBI CCGCTC 2 cut(s) 217, 268
BsrFI RCCGGY 3 cut(s) 30, 94, 106
BsrI ACTGG 2 cut(s) 445, 712
BssAI RCCGGY 3 cut(s) 30, 94, 106
BssECI CCNNGG 4 cut(s) 294, 455, 675, 1284
BssMI GATC 5 cut(s) 305, 319, 363, 420, 520
BssNI GRCGYC 1 cut(s) 176
BssT1I CCWWGG 2 cut(s) 675, 1284
Bst2UI CCWGG 4 cut(s) 263, 456, 702, 1050
Bst4CI ACNGT 1 cut(s) 172
BstACI GRCGYC 1 cut(s) 176
BstAFI CTTAAG 1 cut(s) 272
BstBAI YACGTR 1 cut(s) 326
BstC8I GCNNGC 7 cut(s) 96, 108, 125, 194, 332, 723, 1233
BstDEI CTNAG 3 cut(s) 279, 309, 642
BstF5I GGATG 3 cut(s) 637, 973, 1137
BstFNI CGCG 1 cut(s) 380
BstH2I RGCGCY 1 cut(s) 1249
BstHHI GCGC 3 cut(s) 464, 1107, 1248
BstKTI GATC 5 cut(s) 308, 322, 366, 423, 523
BstMBI GATC 5 cut(s) 305, 319, 363, 420, 520
BstMCI CGRYCG 1 cut(s) 52
BstMWI GCNNNNNNNGC 4 cut(s) 45, 107, 274, 643
BstNI CCWGG 4 cut(s) 263, 456, 702, 1050
BstNSI RCATGY 2 cut(s) 1268, 1339
BstSCI CCNGG 6 cut(s) 16, 43, 261, 454, 700, 1048
BstSLI GKGCMC 1 cut(s) 405
BstUI CGCG 1 cut(s) 380
BstV1I GCAGC 1 cut(s) 139
BstV2I GAAGAC 2 cut(s) 660, 856
BstX2I RGATCY 2 cut(s) 305, 420
BstXI CCANNNNNNTGG 2 cut(s) 917, 968
BstYI RGATCY 2 cut(s) 305, 420
Bsu15I ATCGAT 1 cut(s) 1059
Bsu36I CCTNAGG 1 cut(s) 279
BsuRI GGCC 7 cut(s) 39, 110, 120, 293, 403, 670, 1283
BsuTUI ATCGAT 1 cut(s) 1059
BtsCI GGATG 3 cut(s) 637, 973, 1137
BtsIMutI CAGTG 2 cut(s) 629, 1215
BveI ACCTGC 1 cut(s) 240
Cac8I GCNNGC 7 cut(s) 96, 108, 125, 194, 332, 723, 1233
CciI TCATGA 1 cut(s) 1170
CfoI GCGC 3 cut(s) 464, 1107, 1248
Cfr10I RCCGGY 3 cut(s) 30, 94, 106
Cfr13I GGNCC 8 cut(s) 109, 118, 143, 401, 402, 442, 806, 939
ClaI ATCGAT 1 cut(s) 1059
CseI GACGC 3 cut(s) 184, 331, 643
Csp6I GTAC 3 cut(s) 409, 891, 901
CspCI CAANNNNNGTGG 2 cut(s) 714, 749
CviAII CATG 6 cut(s) 238, 337, 943, 1171, 1265, 1336
CviQI GTAC 3 cut(s) 409, 891, 901
DdeI CTNAG 3 cut(s) 279, 309, 642
DpnI GATC 5 cut(s) 307, 321, 365, 422, 522
DpnII GATC 5 cut(s) 305, 319, 363, 420, 520
EciI GGCGGA 1 cut(s) 93
Ecl136II GAGCTC 2 cut(s) 625, 826
Eco130I CCWWGG 2 cut(s) 675, 1284
Eco147I AGGCCT 2 cut(s) 39, 670
Eco24I GRGCYC 3 cut(s) 405, 627, 828
Eco32I GATATC 1 cut(s) 1090
Eco47I GGWCC 4 cut(s) 143, 442, 806, 939
Eco53kI GAGCTC 2 cut(s) 625, 826
Eco57I CTGAAG 2 cut(s) 227, 1239
Eco81I CCTNAGG 1 cut(s) 279
Eco88I CYCGRG 3 cut(s) 111, 353, 404
EcoICRI GAGCTC 2 cut(s) 625, 826
EcoO109I RGGNCCY 1 cut(s) 401
EcoRI GAATTC 1 cut(s) 1163
EcoRII CCWGG 4 cut(s) 261, 454, 700, 1048
EcoRV GATATC 1 cut(s) 1090
EcoT14I CCWWGG 2 cut(s) 675, 1284
EcoT38I GRGCYC 3 cut(s) 405, 627, 828
ErhI CCWWGG 2 cut(s) 675, 1284
FaeI CATG 6 cut(s) 241, 340, 946, 1174, 1268, 1339
FaqI GGGAC 1 cut(s) 792
FatI CATG 6 cut(s) 237, 336, 942, 1170, 1264, 1335
FauNDI CATATG 1 cut(s) 568
FblI GTMKAC 1 cut(s) 315
Fnu4HI GCNGC 7 cut(s) 99, 121, 128, 153, 156, 179, 269
FokI GGATG 3 cut(s) 624, 980, 1144
FriOI GRGCYC 3 cut(s) 405, 627, 828
Fsp4HI GCNGC 7 cut(s) 99, 121, 128, 153, 156, 179, 269
FspBI CTAG 1 cut(s) 1157
GlaI GCGC 3 cut(s) 463, 1106, 1247
GluI GCNGC 7 cut(s) 99, 121, 128, 153, 156, 179, 269
GsaI CCCAGC 1 cut(s) 1037
GsuI CTGGAG 2 cut(s) 233, 581
HaeII RGCGCY 1 cut(s) 1249
HaeIII GGCC 7 cut(s) 39, 110, 120, 293, 403, 670, 1283
HapII CCGG 5 cut(s) 17, 31, 44, 95, 107
HgaI GACGC 3 cut(s) 184, 331, 643
HhaI GCGC 3 cut(s) 464, 1107, 1248
Hin1I GRCGYC 1 cut(s) 176
Hin1II CATG 6 cut(s) 241, 340, 946, 1174, 1268, 1339
Hin6I GCGC 3 cut(s) 462, 1105, 1246
HinP1I GCGC 3 cut(s) 462, 1105, 1246
HincII GTYRAC 2 cut(s) 316, 1153
HindII GTYRAC 2 cut(s) 316, 1153
HinfI GANTC 7 cut(s) 563, 681, 784, 977, 1000, 1056, 1117
HpaI GTTAAC 1 cut(s) 1153
HpaII CCGG 5 cut(s) 17, 31, 44, 95, 107
HphI GGTGA 6 cut(s) 184, 843, 932, 998, 1009, 1270
Hpy166II GTNNAC 3 cut(s) 316, 1153, 1270
Hpy188I TCNGA 2 cut(s) 168, 200
Hpy8I GTNNAC 3 cut(s) 316, 1153, 1270
Hpy99I CGWCG 7 cut(s) 65, 172, 320, 347, 371, 394, 397
HpyCH4III ACNGT 1 cut(s) 172
HpyCH4IV ACGT 1 cut(s) 325
HpyCH4V TGCA 8 cut(s) 192, 475, 508, 725, 884, 1007, 1215, 1235
HpyF10VI GCNNNNNNNGC 4 cut(s) 45, 107, 274, 643
HpyF3I CTNAG 3 cut(s) 279, 309, 642
HpySE526I ACGT 1 cut(s) 325
Hsp92I GRCGYC 1 cut(s) 176
Hsp92II CATG 6 cut(s) 241, 340, 946, 1174, 1268, 1339
HspAI GCGC 3 cut(s) 462, 1105, 1246
KroI GCCGGC 2 cut(s) 94, 106
KroNI GCCGGC 2 cut(s) 96, 108
KspAI GTTAAC 1 cut(s) 1153
Kzo9I GATC 5 cut(s) 305, 319, 363, 420, 520
LmnI GCTCC 9 cut(s) 106, 201, 214, 265, 358, 451, 559, 630, 823
Lsp1109I GCAGC 1 cut(s) 139
LweI GCATC 7 cut(s) 462, 580, 646, 672, 871, 895, 1116
MaeI CTAG 1 cut(s) 1157
MaeII ACGT 1 cut(s) 325
MaeIII GTNAC 4 cut(s) 172, 253, 951, 1258
MalI GATC 5 cut(s) 307, 321, 365, 422, 522
MbiI CCGCTC 2 cut(s) 217, 268
MboI GATC 5 cut(s) 305, 319, 363, 420, 520
MboII GAAGA 6 cut(s) 94, 665, 856, 1102, 1172, 1318
MfeI CAATTG 1 cut(s) 962
MflI RGATCY 2 cut(s) 305, 420
MhlI GDGCHC 3 cut(s) 405, 627, 828
MluCI AATT 6 cut(s) 779, 876, 962, 1017, 1073, 1163
MlyI GAGTC 3 cut(s) 572, 690, 971
MmeI TCCRAC 4 cut(s) 191, 223, 429, 927
MroNI GCCGGC 2 cut(s) 94, 106
MroXI GAANNNNTTC 3 cut(s) 86, 783, 1317
MseI TTAA 5 cut(s) 222, 273, 609, 1152, 1302
MslI CAYNNNNRTG 2 cut(s) 470, 915
MspA1I CMGCKG 3 cut(s) 130, 181, 559
MspCI CTTAAG 1 cut(s) 272
MspI CCGG 5 cut(s) 17, 31, 44, 95, 107
MspR9I CCNGG 6 cut(s) 18, 45, 263, 456, 702, 1050
MunI CAATTG 1 cut(s) 962
MvaI CCWGG 4 cut(s) 263, 456, 702, 1050
MvnI CGCG 1 cut(s) 380
MwoI GCNNNNNNNGC 4 cut(s) 45, 107, 274, 643
NaeI GCCGGC 2 cut(s) 96, 108
NciI CCSGG 2 cut(s) 18, 45
NdeI CATATG 1 cut(s) 568
NdeII GATC 5 cut(s) 305, 319, 363, 420, 520
NgoMIV GCCGGC 2 cut(s) 94, 106
NlaIII CATG 6 cut(s) 241, 340, 946, 1174, 1268, 1339
NlaIV GGNNCC 7 cut(s) 102, 144, 402, 403, 422, 453, 808
NmeAIII GCCGAG 1 cut(s) 319
NmuCI GTSAC 3 cut(s) 172, 253, 1258
NspI RCATGY 2 cut(s) 1268, 1339
PaeR7I CTCGAG 1 cut(s) 353
PagI TCATGA 1 cut(s) 1170
PceI AGGCCT 2 cut(s) 39, 670
PciI ACATGT 2 cut(s) 1264, 1335
PcsI WCGNNNNNNNCGW 2 cut(s) 351, 1051
PdiI GCCGGC 2 cut(s) 96, 108
PdmI GAANNNNTTC 3 cut(s) 86, 783, 1317
PfeI GAWTC 4 cut(s) 784, 1000, 1056, 1117
PkrI GCNGC 7 cut(s) 100, 122, 129, 154, 157, 180, 270
PleI GAGTC 3 cut(s) 571, 689, 971
PpsI GAGTC 3 cut(s) 571, 689, 971
Ppu21I YACGTR 1 cut(s) 326
PscI ACATGT 2 cut(s) 1264, 1335
Psp124BI GAGCTC 2 cut(s) 627, 828
Psp6I CCWGG 4 cut(s) 261, 454, 700, 1048
PspFI CCCAGC 1 cut(s) 1033
PspGI CCWGG 4 cut(s) 261, 454, 700, 1048
PspN4I GGNNCC 7 cut(s) 102, 144, 402, 403, 422, 453, 808
PspOMI GGGCCC 1 cut(s) 401
PspPI GGNCC 8 cut(s) 109, 118, 143, 401, 402, 442, 806, 939
PsuI RGATCY 2 cut(s) 305, 420
RsaI GTAC 3 cut(s) 410, 892, 902
RsaNI GTAC 3 cut(s) 409, 891, 901
RseI CAYNNNNRTG 2 cut(s) 470, 915
SacI GAGCTC 2 cut(s) 627, 828
SalI GTCGAC 1 cut(s) 314
SaqAI TTAA 5 cut(s) 222, 273, 609, 1152, 1302
SatI GCNGC 7 cut(s) 99, 121, 128, 153, 156, 179, 269
Sau3AI GATC 5 cut(s) 305, 319, 363, 420, 520
Sau96I GGNCC 8 cut(s) 109, 118, 143, 401, 402, 442, 806, 939
ScaI AGTACT 1 cut(s) 410
SchI GAGTC 3 cut(s) 572, 690, 971
ScrFI CCNGG 6 cut(s) 18, 45, 263, 456, 702, 1050
SduI GDGCHC 3 cut(s) 405, 627, 828
SfaNI GCATC 7 cut(s) 462, 580, 646, 672, 871, 895, 1116
Sfr274I CTCGAG 1 cut(s) 353
SinI GGWCC 4 cut(s) 143, 442, 806, 939
SlaI CTCGAG 1 cut(s) 353
SmiMI CAYNNNNRTG 2 cut(s) 470, 915
SmlI CTYRAG 3 cut(s) 272, 353, 979
SmoI CTYRAG 3 cut(s) 272, 353, 979
Sse9I AATT 6 cut(s) 779, 876, 962, 1017, 1073, 1163
SseBI AGGCCT 2 cut(s) 39, 670
SspMI CTAG 1 cut(s) 1157
SstI GAGCTC 2 cut(s) 627, 828
StuI AGGCCT 2 cut(s) 39, 670
StyD4I CCNGG 6 cut(s) 16, 43, 261, 454, 700, 1048
StyI CCWWGG 2 cut(s) 675, 1284
TaaI ACNGT 1 cut(s) 172
TaiI ACGT 1 cut(s) 328
TaqI TCGA 8 cut(s) 90, 315, 354, 366, 435, 857, 1045, 1059
TaqII GACCGA 1 cut(s) 66
TasI AATT 6 cut(s) 779, 876, 962, 1017, 1073, 1163
TatI WGTACW 1 cut(s) 408
TauI GCSGC 6 cut(s) 101, 123, 155, 158, 181, 271
TfiI GAWTC 4 cut(s) 784, 1000, 1056, 1117
Tru1I TTAA 5 cut(s) 222, 273, 609, 1152, 1302
Tru9I TTAA 5 cut(s) 222, 273, 609, 1152, 1302
TscAI CASTG 2 cut(s) 636, 1222
TseFI GTSAC 3 cut(s) 172, 253, 1258
TseI GCWGC 1 cut(s) 127
Tsp45I GTSAC 3 cut(s) 172, 253, 1258
TspDTI ATGAA 6 cut(s) 528, 554, 666, 856, 888, 1268
TspRI CASTG 2 cut(s) 636, 1222
Vha464I CTTAAG 1 cut(s) 272
VpaK11BI GGWCC 4 cut(s) 143, 442, 806, 939
XapI RAATTY 2 cut(s) 1073, 1163
XceI RCATGY 2 cut(s) 1268, 1339
XcmI CCANNNNNNNNNTGG 1 cut(s) 452
XhoI CTCGAG 1 cut(s) 353
XmiI GTMKAC 1 cut(s) 315
XmnI GAANNNNTTC 3 cut(s) 86, 783, 1317
XspI CTAG 1 cut(s) 1157
ZrmI AGTACT 1 cut(s) 410
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.