Rroxscaffold_7G00168940

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0016102
Physical Location & Seq
Forward (+)
9645075 .. 9647830
2756 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00168940.1

Sequence Viewer

Length: 1482 bp
ATGGGAAGCGAGGACGAGAGGGTTCTGGAGAACCTGCTAGACGTTCAATTGCAAGAGCAAAAAGACTCTCTTGCAACCCTCAACCACGCCTTAGTCTCCGACCCCAAAAATCCCGAGCTCCGAGCTCTTCAAGAGGAGGTTGTTCAGGCAATTAAAGATGTTGAGGAAGGGCTTCTGCACCTAAAGCGTGCACGGTTATTACGAGAAGTCGATTCAGCTCTGGATCCTTCTCATCACGCTGATAAGGATGTCCAGGCAGAGACTCTTGATCCGACGGAGGTTCAGCCAGAGCCTCTTGAGGAACCAAGTTACAGTGTTGGATCAAAATGTAGGTTCCGTCACTCTGATGGACGTTGGTACAATGGTCAAGTTATAGGACTGGATGCTTCTAATACCGCAAAAATTGCTTTCCTCAATCCTACTTCTGAAAATATGCTGATTTGCAAGTTCTTTCTACAACAACGATGTCGATTTGGTACTAATTGCCGCTTATCACATGGAGTTGATGTCCCACTCTCCTCCTTGAAGATGTATACGCCAACTATGTGGGAGCAGTCACTAGTAGGGTCAAGTATTTGGGCTGTCTCAGATGGTGAAGAAGGTATTTGGAGGAAAGCTGAACTTGAATCATGGGATGGTTTACTTGGGGTTGGGCGAGTTGTTTTCCAAGATGATGGAAGCTCTGCAAATCTTGGGGAAGAAGCTATAGCATTATCTGAGTTTTCTCAAATGAGTGATGAAGAAGATTCTAGCTCAGAACAATCTGATTACAGTGAGTACGAAGACGATGCCTCACAGGGTTTAGGATTTCTTGAAAGCACCCAACTACAGAGGGGCATTCAGACAGAAACGGCCATATTTGCTAAGTGGGAGAACCACACCCGTGGTATTGCTTCCAAGATGATGGCCAATATGGGTTACCTTGAAGGGACAGGTCTAGGCGCATCTGGGCAGGGAATTGTAGATCCCATCTCTGTGAAGGTCCTTCCACCAAAACAATCTCTTGATCATGCTGTGGAAGCTTGTGAGAAGGAAGAGGGCGAAGGGAATCAGGGAAAGAAGCGTAGCAGAGGTGGTAAAAGGAAACGTGACAAGAAGTTTGCAGCATTGACAAGAGCAGCGAAAGAAGTGGAGTCAACACCTGATATGTTTAGTTTTATTAATAGCCAACTTGCTATGCACGGTGAAGCTTTAAATGGTGGATCAGCAAAGAAGCAGCAGAACAAAGGGTCAGGGGAGGGGAAGAAAGTTGATAGGCGGGATTTGGTGGCTTATGAGGATGAAGTGAAGGAGTTGAAGATGCGAGTTGGAAAGCTAGAAGAAATGGTGAGTAGAAACAAAAAAGAGAAGGTGGTTTATGAGGCTGCAATGAGAAAATTGATTGAAACTCGCAGAGTCTTGGCAGAGCGGGAGACAGCTCAGGCTTCTGCATCAAATGCGGTTGTCAGTAGAGAAAAAGAGAAGAGATGGCTTAAGTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
G-patch zf-CCCH

Protein Analysis

493

Amino Acids

54.87

Weight (kDa)

5.28

Isoelectric Point (pI)

45.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CCCH_4 PF18044 147 - 166 3.4e-07 CCCH-type zinc finger
G-patch PF01585 294 - 336 9.7e-14 G-patch domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016102)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G24830
fragaria_vesca FvH4_2g41350
malus_domestica MD08G1051900.v1.1
prunus_persica Prupe.1G396900_v2.0.a1
pyrus_communis pycom08g04340
rosa_chinensis RchiOBHm_Chr6g0299181
rosa_laevigata RLG00000011456
rosa_multiflora Rmu_sc0001434.1_g000014
rosa_roxburghii Rroxscaffold_7G00168940
rosa_rugosa Rorug06G0286000
rosa_samantha Rh6AG396900 Rh6BG405600 Rh6CG411700 Rh6DG398400
rosa_wichuraiana Rw6G034760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 42
AccBSI CCGCTC 1 cut(s) 1408
AccI GTMKAC 1 cut(s) 533
AciI CCGC 5 cut(s) 396, 487, 1258, 1408, 1439
AclWI GGATC 6 cut(s) 218, 231, 263, 328, 959, 1210
AcoI YGGCCR 2 cut(s) 852, 906
AfaI GTAC 3 cut(s) 359, 478, 779
AflII CTTAAG 1 cut(s) 1472
AgsI TTSAA 8 cut(s) 47, 131, 526, 626, 815, 926, 1297, 1385
AhlI ACTAGT 1 cut(s) 559
AjnI CCWGG 1 cut(s) 252
AleI CACNNNNGTG 1 cut(s) 882
Alw21I GWGCWC 3 cut(s) 120, 127, 193
Alw26I GTCTC 4 cut(s) 100, 254, 589, 1406
Alw44I GTGCAC 1 cut(s) 189
AlwI GGATC 6 cut(s) 218, 231, 263, 328, 959, 1210
Ama87I CYCGRG 1 cut(s) 113
AoxI GGCC 2 cut(s) 852, 906
ApaLI GTGCAC 1 cut(s) 189
ApeKI GCWGC 4 cut(s) 1103, 1118, 1216, 1364
ArsI GACNNNNNNTTYG 2 cut(s) 1082, 1114
AseI ATTAAT 1 cut(s) 1161
Asp700I GAANNNNTTC 1 cut(s) 171
AspLEI GCGC 1 cut(s) 944
AspS9I GGNCC 1 cut(s) 982
AsuHPI GGTGA 3 cut(s) 605, 1196, 1339
AvaI CYCGRG 1 cut(s) 113
AvaII GGWCC 1 cut(s) 982
BaeGI GKGCMC 1 cut(s) 193
BaeI ACNNNNGTAYC 2 cut(s) 349, 382
BalI TGGCCA 1 cut(s) 908
BamHI GGATCC 1 cut(s) 223
BanII GRGCYC 2 cut(s) 120, 127
BbsI GAAGAC 1 cut(s) 789
Bbv12I GWGCWC 3 cut(s) 120, 127, 193
BbvI GCAGC 4 cut(s) 1115, 1130, 1228, 1351
BccI CCATC 7 cut(s) 341, 584, 629, 668, 898, 977, 1461
BceAI ACGGC 1 cut(s) 867
BcgI CGANNNNNNTGC 2 cut(s) 770, 804
BciT130I CCWGG 1 cut(s) 254
BclI TGATCA 1 cut(s) 1006
BcoDI GTCTC 4 cut(s) 100, 254, 589, 1406
BcuI ACTAGT 1 cut(s) 559
BfaI CTAG 5 cut(s) 38, 560, 750, 938, 1316
BfmI CTRYAG 2 cut(s) 705, 827
BfrI CTTAAG 1 cut(s) 1472
BfuAI ACCTGC 1 cut(s) 42
BisI GCNGC 5 cut(s) 487, 1104, 1119, 1217, 1365
BlsI GCNGC 5 cut(s) 488, 1105, 1120, 1218, 1366
Bme1390I CCNGG 1 cut(s) 254
Bme18I GGWCC 1 cut(s) 982
BmeT110I CYCGRG 1 cut(s) 113
BmgT120I GGNCC 1 cut(s) 982
BmiI GGNNCC 3 cut(s) 225, 303, 335
BmrFI CCNGG 1 cut(s) 254
BmsI GCATC 5 cut(s) 373, 778, 953, 1290, 1439
BpiI GAAGAC 1 cut(s) 789
BpmI CTGGAG 1 cut(s) 47
Bpu10I CCTNAGC 1 cut(s) 1419
BpuEI CTTGAG 1 cut(s) 317
BsaJI CCNNGG 1 cut(s) 883
BsaXI ACNNNNNCTCC 2 cut(s) 492, 522
Bse1I ACTGG 1 cut(s) 384
Bse3DI GCAATG 1 cut(s) 1374
BseBI CCWGG 1 cut(s) 254
BseDI CCNNGG 1 cut(s) 883
BseGI GGATG 4 cut(s) 253, 388, 640, 1285
BseMI GCAATG 1 cut(s) 1374
BseMII CTCAG 4 cut(s) 600, 708, 768, 1433
BseNI ACTGG 1 cut(s) 384
BseRI GAGGAG 2 cut(s) 149, 508
BseSI GKGCMC 1 cut(s) 193
BseXI GCAGC 4 cut(s) 1115, 1130, 1228, 1351
BsgI GTGCAG 1 cut(s) 161
BshFI GGCC 2 cut(s) 854, 908
BsiHKAI GWGCWC 3 cut(s) 120, 127, 193
BsiHKCI CYCGRG 1 cut(s) 113
BslFI GGGAC 2 cut(s) 494, 943
BsmAI GTCTC 4 cut(s) 100, 254, 589, 1406
BsmFI GGGAC 2 cut(s) 494, 943
BsmI GAATGC 1 cut(s) 837
BsnI GGCC 2 cut(s) 854, 908
BsoBI CYCGRG 1 cut(s) 113
Bsp1286I GDGCHC 3 cut(s) 120, 127, 193
Bsp143I GATC 6 cut(s) 223, 268, 320, 964, 1006, 1202
BspACI CCGC 5 cut(s) 396, 487, 1258, 1408, 1439
BspANI GGCC 2 cut(s) 854, 908
BspCNI CTCAG 4 cut(s) 599, 709, 767, 1432
BspLI GGNNCC 3 cut(s) 225, 303, 335
BspMI ACCTGC 1 cut(s) 42
BspPI GGATC 6 cut(s) 218, 231, 263, 328, 959, 1210
BspQI GCTCTTC 1 cut(s) 132
BspTI CTTAAG 1 cut(s) 1472
BsrBI CCGCTC 1 cut(s) 1408
BsrDI GCAATG 1 cut(s) 1374
BsrI ACTGG 1 cut(s) 384
BssECI CCNNGG 1 cut(s) 883
BssMI GATC 6 cut(s) 223, 268, 320, 964, 1006, 1202
BssNAI GTATAC 1 cut(s) 534
Bst1107I GTATAC 1 cut(s) 534
Bst2UI CCWGG 1 cut(s) 254
Bst4CI ACNGT 4 cut(s) 195, 314, 773, 1184
Bst6I CTCTTC 3 cut(s) 132, 1029, 1457
BstAFI CTTAAG 1 cut(s) 1472
BstAPI GCANNNNNTGC 2 cut(s) 404, 1436
BstC8I GCNNGC 1 cut(s) 189
BstDEI CTNAG 6 cut(s) 91, 586, 717, 754, 864, 1419
BstDSI CCRYGG 1 cut(s) 883
BstEII GGTNACC 1 cut(s) 917
BstF5I GGATG 4 cut(s) 253, 388, 640, 1285
BstHHI GCGC 1 cut(s) 944
BstKTI GATC 6 cut(s) 226, 271, 323, 967, 1009, 1205
BstMAI GTCTC 4 cut(s) 100, 254, 589, 1406
BstMBI GATC 6 cut(s) 223, 268, 320, 964, 1006, 1202
BstMWI GCNNNNNNNGC 5 cut(s) 184, 404, 860, 1019, 1436
BstNI CCWGG 1 cut(s) 254
BstPI GGTNACC 1 cut(s) 917
BstSCI CCNGG 1 cut(s) 252
BstSFI CTRYAG 2 cut(s) 705, 827
BstSLI GKGCMC 1 cut(s) 193
BstV1I GCAGC 4 cut(s) 1115, 1130, 1228, 1351
BstV2I GAAGAC 1 cut(s) 789
BstX2I RGATCY 2 cut(s) 223, 964
BstXI CCANNNNNNTGG 4 cut(s) 546, 674, 884, 904
BstYI RGATCY 2 cut(s) 223, 964
BstZ17I GTATAC 1 cut(s) 534
BsuRI GGCC 2 cut(s) 854, 908
BtgI CCRYGG 1 cut(s) 883
BtsCI GGATG 4 cut(s) 253, 388, 640, 1285
BtsIMutI CAGTG 2 cut(s) 319, 778
BveI ACCTGC 1 cut(s) 42
Cac8I GCNNGC 1 cut(s) 189
CfoI GCGC 1 cut(s) 944
Cfr13I GGNCC 1 cut(s) 982
Csp6I GTAC 3 cut(s) 358, 477, 778
CviAII CATG 3 cut(s) 497, 630, 1010
CviQI GTAC 3 cut(s) 358, 477, 778
DdeI CTNAG 6 cut(s) 91, 586, 717, 754, 864, 1419
DpnI GATC 6 cut(s) 225, 270, 322, 966, 1008, 1204
DpnII GATC 6 cut(s) 223, 268, 320, 964, 1006, 1202
DraI TTTAAA 1 cut(s) 1194
EaeI YGGCCR 2 cut(s) 852, 906
Eam1104I CTCTTC 3 cut(s) 132, 1029, 1457
EarI CTCTTC 3 cut(s) 132, 1029, 1457
Ecl136II GAGCTC 2 cut(s) 118, 125
Eco24I GRGCYC 2 cut(s) 120, 127
Eco47I GGWCC 1 cut(s) 982
Eco53kI GAGCTC 2 cut(s) 118, 125
Eco88I CYCGRG 1 cut(s) 113
Eco91I GGTNACC 1 cut(s) 917
EcoICRI GAGCTC 2 cut(s) 118, 125
EcoO109I RGGNCCY 1 cut(s) 982
EcoO65I GGTNACC 1 cut(s) 917
EcoRII CCWGG 1 cut(s) 252
EcoT38I GRGCYC 2 cut(s) 120, 127
FaeI CATG 3 cut(s) 500, 633, 1013
FalI AAGNNNNNCTT 4 cut(s) 54, 86, 606, 638
FaqI GGGAC 2 cut(s) 494, 943
FatI CATG 3 cut(s) 496, 629, 1009
FauI CCCGC 2 cut(s) 1251, 1401
FbaI TGATCA 1 cut(s) 1006
FblI GTMKAC 1 cut(s) 533
Fnu4HI GCNGC 5 cut(s) 487, 1104, 1119, 1217, 1365
FokI GGATG 4 cut(s) 260, 395, 647, 1292
FriOI GRGCYC 2 cut(s) 120, 127
Fsp4HI GCNGC 5 cut(s) 487, 1104, 1119, 1217, 1365
FspBI CTAG 5 cut(s) 38, 560, 750, 938, 1316
GlaI GCGC 1 cut(s) 943
GluI GCNGC 5 cut(s) 487, 1104, 1119, 1217, 1365
GsuI CTGGAG 1 cut(s) 47
HaeIII GGCC 2 cut(s) 854, 908
HhaI GCGC 1 cut(s) 944
Hin1II CATG 3 cut(s) 500, 633, 1013
Hin6I GCGC 1 cut(s) 942
HinP1I GCGC 1 cut(s) 942
HincII GTYRAC 1 cut(s) 1137
HindII GTYRAC 1 cut(s) 1137
HindIII AAGCTT 2 cut(s) 1020, 1188
HinfI GANTC 8 cut(s) 65, 212, 262, 626, 746, 1048, 1133, 1395
HphI GGTGA 3 cut(s) 605, 1196, 1339
Hpy166II GTNNAC 4 cut(s) 191, 534, 641, 1137
Hpy188III TCNNGA 8 cut(s) 26, 113, 131, 221, 266, 296, 812, 1004
Hpy8I GTNNAC 4 cut(s) 191, 534, 641, 1137
Hpy99I CGWCG 1 cut(s) 277
HpyCH4III ACNGT 4 cut(s) 195, 314, 773, 1184
HpyCH4IV ACGT 3 cut(s) 42, 352, 1087
HpyF10VI GCNNNNNNNGC 5 cut(s) 184, 404, 860, 1019, 1436
HpyF3I CTNAG 6 cut(s) 91, 586, 717, 754, 864, 1419
HpySE526I ACGT 3 cut(s) 42, 352, 1087
Hsp92II CATG 3 cut(s) 500, 633, 1013
HspAI GCGC 1 cut(s) 942
Ksp22I TGATCA 1 cut(s) 1006
Kzo9I GATC 6 cut(s) 223, 268, 320, 964, 1006, 1202
LguI GCTCTTC 1 cut(s) 132
LmnI GCTCC 2 cut(s) 123, 550
Lsp1109I GCAGC 4 cut(s) 1115, 1130, 1228, 1351
LweI GCATC 5 cut(s) 373, 778, 953, 1290, 1439
MaeI CTAG 5 cut(s) 38, 560, 750, 938, 1316
MaeII ACGT 3 cut(s) 42, 352, 1087
MaeIII GTNAC 5 cut(s) 308, 338, 555, 917, 1088
MalI GATC 6 cut(s) 225, 270, 322, 966, 1008, 1204
MbiI CCGCTC 1 cut(s) 1408
MboI GATC 6 cut(s) 223, 268, 320, 964, 1006, 1202
MfeI CAATTG 1 cut(s) 47
MflI RGATCY 2 cut(s) 223, 964
MhlI GDGCHC 3 cut(s) 120, 127, 193
MlsI TGGCCA 1 cut(s) 908
MluCI AATT 6 cut(s) 47, 150, 402, 481, 957, 1376
MluNI TGGCCA 1 cut(s) 908
MlyI GAGTC 4 cut(s) 59, 256, 1142, 1404
MmeI TCCRAC 4 cut(s) 123, 296, 298, 1288
Mox20I TGGCCA 1 cut(s) 908
MroXI GAANNNNTTC 1 cut(s) 171
MscI TGGCCA 1 cut(s) 908
MseI TTAA 4 cut(s) 153, 1161, 1193, 1473
MslI CAYNNNNRTG 3 cut(s) 345, 882, 974
Msp20I TGGCCA 1 cut(s) 908
MspCI CTTAAG 1 cut(s) 1472
MspR9I CCNGG 1 cut(s) 254
MunI CAATTG 1 cut(s) 47
Mva1269I GAATGC 1 cut(s) 837
MvaI CCWGG 1 cut(s) 254
MwoI GCNNNNNNNGC 5 cut(s) 184, 404, 860, 1019, 1436
NdeII GATC 6 cut(s) 223, 268, 320, 964, 1006, 1202
NlaIII CATG 3 cut(s) 500, 633, 1013
NlaIV GGNNCC 3 cut(s) 225, 303, 335
NmuCI GTSAC 3 cut(s) 338, 555, 1088
OliI CACNNNNGTG 1 cut(s) 882
PciSI GCTCTTC 1 cut(s) 132
PcsI WCGNNNNNNNCGW 1 cut(s) 199
PctI GAATGC 1 cut(s) 837
PdmI GAANNNNTTC 1 cut(s) 171
PfeI GAWTC 4 cut(s) 212, 626, 746, 1048
PkrI GCNGC 5 cut(s) 488, 1105, 1120, 1218, 1366
PleI GAGTC 4 cut(s) 59, 256, 1141, 1403
PpsI GAGTC 4 cut(s) 59, 256, 1141, 1403
PpuMI RGGWCCY 1 cut(s) 982
PshBI ATTAAT 1 cut(s) 1161
Psp124BI GAGCTC 2 cut(s) 120, 127
Psp5II RGGWCCY 1 cut(s) 982
Psp6I CCWGG 1 cut(s) 252
PspEI GGTNACC 1 cut(s) 917
PspGI CCWGG 1 cut(s) 252
PspN4I GGNNCC 3 cut(s) 225, 303, 335
PspPI GGNCC 1 cut(s) 982
PspPPI RGGWCCY 1 cut(s) 982
PsuI RGATCY 2 cut(s) 223, 964
RsaI GTAC 3 cut(s) 359, 478, 779
RsaNI GTAC 3 cut(s) 358, 477, 778
RseI CAYNNNNRTG 3 cut(s) 345, 882, 974
SacI GAGCTC 2 cut(s) 120, 127
SapI GCTCTTC 1 cut(s) 132
SaqAI TTAA 4 cut(s) 153, 1161, 1193, 1473
SatI GCNGC 5 cut(s) 487, 1104, 1119, 1217, 1365
Sau3AI GATC 6 cut(s) 223, 268, 320, 964, 1006, 1202
Sau96I GGNCC 1 cut(s) 982
SchI GAGTC 4 cut(s) 59, 256, 1142, 1404
ScrFI CCNGG 1 cut(s) 254
SduI GDGCHC 3 cut(s) 120, 127, 193
SfaNI GCATC 5 cut(s) 373, 778, 953, 1290, 1439
SfcI CTRYAG 2 cut(s) 705, 827
SinI GGWCC 1 cut(s) 982
SmiMI CAYNNNNRTG 3 cut(s) 345, 882, 974
SmlI CTYRAG 2 cut(s) 296, 1472
SmoI CTYRAG 2 cut(s) 296, 1472
SpeI ACTAGT 1 cut(s) 559
Sse9I AATT 6 cut(s) 47, 150, 402, 481, 957, 1376
SsiI CCGC 5 cut(s) 396, 487, 1258, 1408, 1439
SspMI CTAG 5 cut(s) 38, 560, 750, 938, 1316
SstI GAGCTC 2 cut(s) 120, 127
StyD4I CCNGG 1 cut(s) 252
TaaI ACNGT 4 cut(s) 195, 314, 773, 1184
TaiI ACGT 3 cut(s) 45, 355, 1090
TaqI TCGA 2 cut(s) 210, 469
TasI AATT 6 cut(s) 47, 150, 402, 481, 957, 1376
TauI GCSGC 1 cut(s) 489
TfiI GAWTC 4 cut(s) 212, 626, 746, 1048
Tru1I TTAA 4 cut(s) 153, 1161, 1193, 1473
Tru9I TTAA 4 cut(s) 153, 1161, 1193, 1473
TscAI CASTG 2 cut(s) 319, 778
TseFI GTSAC 3 cut(s) 338, 555, 1088
TseI GCWGC 4 cut(s) 1103, 1118, 1216, 1364
Tsp45I GTSAC 3 cut(s) 338, 555, 1088
TspDTI ATGAA 2 cut(s) 753, 1296
TspGWI ACGGA 2 cut(s) 290, 326
TspRI CASTG 2 cut(s) 319, 778
Vha464I CTTAAG 1 cut(s) 1472
VneI GTGCAC 1 cut(s) 189
VpaK11BI GGWCC 1 cut(s) 982
VspI ATTAAT 1 cut(s) 1161
XmiI GTMKAC 1 cut(s) 533
XmnI GAANNNNTTC 1 cut(s) 171
XspI CTAG 5 cut(s) 38, 560, 750, 938, 1316
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.