AT2G26340

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0012130
Physical Location & Seq
Forward (+)
11215208 .. 11217033
1826 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G26340.2

Sequence Viewer

Length: 762 bp
ATGTTGAATGTTCATAGCCATAATAATAATTTGTCCAACGGAGATAAGACGCCTCTGGTGTTATCCCCAATGTCGTCACTCCACGCTACCGTGAGCCTCCCACTGTTCTCCAACTCAAACCACAAAAAGCTAACGTGCGCAGCTACATTATCACCTCCGCCATGGAAACAGAGCCGGCGAGTTATCTCCGTCTCCTTTTTTCTCTCCCGTCTCCTCCTCCTCCCTAACGATGCTATGGCTGGTGGCTTAATGGATAAATTGGATAAATACGTCAAGAGGAAGAAACTTGATCCACTTGAAGCATATGTACCACCAGTGATTCTAGCTCAGTTACAAATCCAGGATCTTGAGGGATTTTTGAATGTGGAGAAACCTGAATTTGAGGCGTGTAGACGCCAATTGCGGTCTGGTCCTGCTAGCTCTCTTCGTGTAAACATTCGAGCTGTTGCTCAGTATGCTTCAGATGATGGTTTCTCCAAAACCGCCACTGATGATGTTGATCGATGTTTAAGAGCATTGGAAGAACTGGATTCGTTGTTTCTACGTGCGTCGAGGAAAGATTCAAATGCAACTGTTGTATTGATGAAGTCACAGCTTGGAACAGCGTTAACCGCACTGGACAGTCTTCTACAAACAGTTCCTTCTCAAGTGCTTGATAAAGGGAAAGCTATGGTGGAAGTCTACAGATCAGCATCTGAAGAAGATGCGGGAAGTGATGATTTAGAATCCTCTGAGATAAAGCAGCTCCAGTCCATACTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

253

Amino Acids

27.82

Weight (kDa)

6.91

Isoelectric Point (pI)

63.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7880 PF25306 98 - 221 8.6e-46 Domain of unknown function (DUF7880)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012130)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G26340 AT2G26340
fragaria_vesca FvH4_2g30980 FvH4_2g30980 FvH4_2g30980 FvH4_2g30980
malus_domestica MD08G1071400.v1.1 MD15G1049800.v1.1
prunus_persica Prupe.1G404100_v2.0.a1
pyrus_communis pycom08g05930
rosa_chinensis RchiOBHm_Chr6g0311811
rosa_laevigata RLG00000010372
rosa_multiflora Rmu_sc0002888.1_g000044
rosa_roxburghii Rroxscaffold_7G00157290
rosa_samantha Rh6AG507200 Rh6BG518200 Rh6CG523700 Rh6DG509500
rosa_wichuraiana Rw6G044130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 139
AccI GTMKAC 2 cut(s) 391, 681
AciI CCGC 5 cut(s) 158, 403, 483, 612, 707
AclWI GGATC 2 cut(s) 284, 351
AcsI RAATTY 1 cut(s) 377
AcuI CTGAAG 2 cut(s) 444, 717
AcyI GRCGYC 2 cut(s) 50, 394
AfaI GTAC 1 cut(s) 309
AgsI TTSAA 4 cut(s) 7, 299, 361, 564
AjnI CCWGG 1 cut(s) 339
AluBI AGCT 8 cut(s) 130, 143, 326, 420, 443, 595, 668, 745
AluI AGCT 8 cut(s) 130, 143, 326, 420, 443, 595, 668, 745
Alw26I GTCTC 2 cut(s) 196, 215
AlwI GGATC 2 cut(s) 284, 351
AlwNI CAGNNNCTG 1 cut(s) 695
ApeKI GCWGC 2 cut(s) 140, 742
ApoI RAATTY 1 cut(s) 377
AspLEI GCGC 1 cut(s) 140
AspS9I GGNCC 1 cut(s) 410
AsuHPI GGTGA 1 cut(s) 144
AsuNHI GCTAGC 1 cut(s) 416
AvaII GGWCC 1 cut(s) 410
BarI GAAGNNNNNNTAC 2 cut(s) 291, 323
BbsI GAAGAC 1 cut(s) 617
BbvI GCAGC 2 cut(s) 152, 754
BccI CCATC 1 cut(s) 461
BciT130I CCWGG 1 cut(s) 341
BcoDI GTCTC 2 cut(s) 196, 215
BfaI CTAG 2 cut(s) 323, 417
BfmI CTRYAG 1 cut(s) 682
BisI GCNGC 2 cut(s) 141, 743
BlsI GCNGC 2 cut(s) 142, 744
Bme1390I CCNGG 1 cut(s) 341
Bme18I GGWCC 1 cut(s) 410
BmgT120I GGNCC 1 cut(s) 410
BmrFI CCNGG 1 cut(s) 341
BmsI GCATC 3 cut(s) 220, 694, 701
BmtI GCTAGC 1 cut(s) 420
BpiI GAAGAC 1 cut(s) 617
BpmI CTGGAG 1 cut(s) 731
BpuEI CTTGAG 2 cut(s) 368, 630
Bsa29I ATCGAT 1 cut(s) 502
BsaAI YACGTR 1 cut(s) 545
BsaBI GATNNNNATC 2 cut(s) 498, 691
BsaHI GRCGYC 2 cut(s) 50, 394
BsaJI CCNNGG 1 cut(s) 161
Bse118I RCCGGY 1 cut(s) 174
Bse1I ACTGG 4 cut(s) 314, 531, 621, 748
Bse8I GATNNNNATC 2 cut(s) 498, 691
BseBI CCWGG 1 cut(s) 341
BseCI ATCGAT 1 cut(s) 502
BseDI CCNNGG 1 cut(s) 161
BseJI GATNNNNATC 2 cut(s) 498, 691
BseMII CTCAG 3 cut(s) 341, 464, 723
BseNI ACTGG 4 cut(s) 314, 531, 621, 748
BseRI GAGGAG 3 cut(s) 203, 206, 209
BseXI GCAGC 2 cut(s) 152, 754
BshVI ATCGAT 1 cut(s) 502
BsiSI CCGG 1 cut(s) 175
BsmAI GTCTC 2 cut(s) 196, 215
BsmBI CGTCTC 2 cut(s) 196, 215
Bsp143I GATC 4 cut(s) 289, 343, 499, 686
Bsp19I CCATGG 1 cut(s) 161
BspACI CCGC 5 cut(s) 158, 403, 483, 612, 707
BspCNI CTCAG 3 cut(s) 340, 463, 724
BspDI ATCGAT 1 cut(s) 502
BspOI GCTAGC 1 cut(s) 420
BspPI GGATC 2 cut(s) 284, 351
BsrFI RCCGGY 1 cut(s) 174
BsrI ACTGG 4 cut(s) 314, 531, 621, 748
BssAI RCCGGY 1 cut(s) 174
BssECI CCNNGG 1 cut(s) 161
BssMI GATC 4 cut(s) 289, 343, 499, 686
BssNI GRCGYC 2 cut(s) 50, 394
BssT1I CCWWGG 1 cut(s) 161
Bst2UI CCWGG 1 cut(s) 341
Bst4CI ACNGT 6 cut(s) 91, 105, 574, 623, 637, 759
Bst6I CTCTTC 1 cut(s) 429
BstACI GRCGYC 2 cut(s) 50, 394
BstBAI YACGTR 1 cut(s) 545
BstC8I GCNNGC 2 cut(s) 176, 418
BstDEI CTNAG 3 cut(s) 327, 450, 732
BstDSI CCRYGG 1 cut(s) 161
BstHHI GCGC 1 cut(s) 140
BstKTI GATC 4 cut(s) 292, 346, 502, 689
BstMAI GTCTC 2 cut(s) 196, 215
BstMBI GATC 4 cut(s) 289, 343, 499, 686
BstMWI GCNNNNNNNGC 2 cut(s) 455, 611
BstNI CCWGG 1 cut(s) 341
BstSCI CCNGG 1 cut(s) 339
BstSFI CTRYAG 1 cut(s) 682
BstV1I GCAGC 2 cut(s) 152, 754
BstV2I GAAGAC 1 cut(s) 617
BstX2I RGATCY 1 cut(s) 343
BstYI RGATCY 1 cut(s) 343
Bsu15I ATCGAT 1 cut(s) 502
BsuTUI ATCGAT 1 cut(s) 502
BtgI CCRYGG 1 cut(s) 161
BtsIMutI CAGTG 4 cut(s) 101, 321, 486, 614
Cac8I GCNNGC 2 cut(s) 176, 418
CaiI CAGNNNCTG 1 cut(s) 695
CfoI GCGC 1 cut(s) 140
Cfr10I RCCGGY 1 cut(s) 174
Cfr13I GGNCC 1 cut(s) 410
ClaI ATCGAT 1 cut(s) 502
CseI GACGC 3 cut(s) 58, 402, 537
Csp6I GTAC 1 cut(s) 308
CviAII CATG 1 cut(s) 162
CviQI GTAC 1 cut(s) 308
DdeI CTNAG 3 cut(s) 327, 450, 732
DpnI GATC 4 cut(s) 291, 345, 501, 688
DpnII GATC 4 cut(s) 289, 343, 499, 686
Eam1104I CTCTTC 1 cut(s) 429
EarI CTCTTC 1 cut(s) 429
EciI GGCGGA 1 cut(s) 147
Eco130I CCWWGG 1 cut(s) 161
Eco47I GGWCC 1 cut(s) 410
Eco57I CTGAAG 2 cut(s) 444, 717
EcoRII CCWGG 1 cut(s) 339
EcoT14I CCWWGG 1 cut(s) 161
ErhI CCWWGG 1 cut(s) 161
Esp3I CGTCTC 2 cut(s) 196, 215
FaeI CATG 1 cut(s) 165
FaiI YATR 9 cut(s) 15, 21, 163, 236, 304, 306, 456, 671, 755
FatI CATG 1 cut(s) 161
FauI CCCGC 1 cut(s) 700
FauNDI CATATG 1 cut(s) 304
FblI GTMKAC 2 cut(s) 391, 681
Fnu4HI GCNGC 2 cut(s) 141, 743
Fsp4HI GCNGC 2 cut(s) 141, 743
FspBI CTAG 2 cut(s) 323, 417
FspI TGCGCA 1 cut(s) 139
GlaI GCGC 1 cut(s) 139
GluI GCNGC 2 cut(s) 141, 743
GsuI CTGGAG 1 cut(s) 731
HapII CCGG 1 cut(s) 175
HgaI GACGC 3 cut(s) 58, 402, 537
HhaI GCGC 1 cut(s) 140
Hin1I GRCGYC 2 cut(s) 50, 394
Hin1II CATG 1 cut(s) 165
Hin6I GCGC 1 cut(s) 138
HinP1I GCGC 1 cut(s) 138
HincII GTYRAC 1 cut(s) 609
HindII GTYRAC 1 cut(s) 609
HinfI GANTC 4 cut(s) 319, 530, 560, 725
HpaI GTTAAC 1 cut(s) 609
HpaII CCGG 1 cut(s) 175
HphI GGTGA 1 cut(s) 144
Hpy166II GTNNAC 4 cut(s) 392, 433, 609, 682
Hpy188I TCNGA 3 cut(s) 463, 697, 733
Hpy188III TCNNGA 2 cut(s) 274, 347
Hpy8I GTNNAC 4 cut(s) 392, 433, 609, 682
Hpy99I CGWCG 1 cut(s) 553
HpyAV CCTTC 1 cut(s) 651
HpyCH4III ACNGT 6 cut(s) 91, 105, 574, 623, 637, 759
HpyCH4IV ACGT 3 cut(s) 134, 270, 544
HpyCH4V TGCA 1 cut(s) 569
HpyF10VI GCNNNNNNNGC 2 cut(s) 455, 611
HpyF3I CTNAG 3 cut(s) 327, 450, 732
HpySE526I ACGT 3 cut(s) 134, 270, 544
Hsp92I GRCGYC 2 cut(s) 50, 394
Hsp92II CATG 1 cut(s) 165
HspAI GCGC 1 cut(s) 138
KroI GCCGGC 1 cut(s) 174
KroNI GCCGGC 1 cut(s) 176
KspAI GTTAAC 1 cut(s) 609
Kzo9I GATC 4 cut(s) 289, 343, 499, 686
LmnI GCTCC 1 cut(s) 750
Lsp1109I GCAGC 2 cut(s) 152, 754
LweI GCATC 3 cut(s) 220, 694, 701
MaeI CTAG 2 cut(s) 323, 417
MaeII ACGT 3 cut(s) 134, 270, 544
MaeIII GTNAC 3 cut(s) 75, 330, 588
MalI GATC 4 cut(s) 291, 345, 501, 688
MboI GATC 4 cut(s) 289, 343, 499, 686
MboII GAAGA 6 cut(s) 292, 416, 533, 617, 710, 713
MfeI CAATTG 1 cut(s) 398
MflI RGATCY 1 cut(s) 343
MluCI AATT 4 cut(s) 28, 257, 377, 398
MmeI TCCRAC 2 cut(s) 60, 135
MroNI GCCGGC 1 cut(s) 174
MseI TTAA 3 cut(s) 248, 509, 608
MspI CCGG 1 cut(s) 175
MspR9I CCNGG 1 cut(s) 341
MunI CAATTG 1 cut(s) 398
MvaI CCWGG 1 cut(s) 341
MwoI GCNNNNNNNGC 2 cut(s) 455, 611
NaeI GCCGGC 1 cut(s) 176
NcoI CCATGG 1 cut(s) 161
NdeI CATATG 1 cut(s) 304
NdeII GATC 4 cut(s) 289, 343, 499, 686
NgoMIV GCCGGC 1 cut(s) 174
NheI GCTAGC 1 cut(s) 416
NlaIII CATG 1 cut(s) 165
NmuCI GTSAC 2 cut(s) 75, 588
NsbI TGCGCA 1 cut(s) 139
PdiI GCCGGC 1 cut(s) 176
PfeI GAWTC 4 cut(s) 319, 530, 560, 725
PfoI TCCNGGA 1 cut(s) 339
PkrI GCNGC 2 cut(s) 142, 744
Ppu21I YACGTR 1 cut(s) 545
Psp6I CCWGG 1 cut(s) 339
PspGI CCWGG 1 cut(s) 339
PspPI GGNCC 1 cut(s) 410
PstNI CAGNNNCTG 1 cut(s) 695
PsuI RGATCY 1 cut(s) 343
RsaI GTAC 1 cut(s) 309
RsaNI GTAC 1 cut(s) 308
SaqAI TTAA 3 cut(s) 248, 509, 608
SatI GCNGC 2 cut(s) 141, 743
Sau3AI GATC 4 cut(s) 289, 343, 499, 686
Sau96I GGNCC 1 cut(s) 410
ScrFI CCNGG 1 cut(s) 341
SfaNI GCATC 3 cut(s) 220, 694, 701
SfcI CTRYAG 1 cut(s) 682
SinI GGWCC 1 cut(s) 410
SmlI CTYRAG 2 cut(s) 347, 645
SmoI CTYRAG 2 cut(s) 347, 645
Sse9I AATT 4 cut(s) 28, 257, 377, 398
SsiI CCGC 5 cut(s) 158, 403, 483, 612, 707
SspMI CTAG 2 cut(s) 323, 417
StyD4I CCNGG 1 cut(s) 339
StyI CCWWGG 1 cut(s) 161
TaaI ACNGT 6 cut(s) 91, 105, 574, 623, 637, 759
TaiI ACGT 3 cut(s) 137, 273, 547
TaqI TCGA 3 cut(s) 439, 502, 551
TasI AATT 4 cut(s) 28, 257, 377, 398
TfiI GAWTC 4 cut(s) 319, 530, 560, 725
Tru1I TTAA 3 cut(s) 248, 509, 608
Tru9I TTAA 3 cut(s) 248, 509, 608
TscAI CASTG 4 cut(s) 108, 321, 493, 621
TseFI GTSAC 2 cut(s) 75, 588
TseI GCWGC 2 cut(s) 140, 742
Tsp45I GTSAC 2 cut(s) 75, 588
TspDTI ATGAA 1 cut(s) 599
TspGWI ACGGA 2 cut(s) 54, 178
TspRI CASTG 4 cut(s) 108, 321, 493, 621
VpaK11BI GGWCC 1 cut(s) 410
XapI RAATTY 1 cut(s) 377
XcmI CCANNNNNNNNNTGG 1 cut(s) 404
XmiI GTMKAC 2 cut(s) 391, 681
XspI CTAG 2 cut(s) 323, 417
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.