RchiOBHm_Chr6g0311811

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0012130
Physical Location & Seq
Reverse (-)
68666615 .. 68668712
2098 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ28045

Sequence Viewer

Length: 711 bp
ATGGCTAGTGCTACACTGAGCGCCACTGCGCACGTTAGCACGAACCCCTTCACTTCCTCAACCGTCTCTACCAGAGCAAACAAGTTCCGGCCAGTGAGGTGCGCACTGTCACCCCAAAATTGGCGGGAAAGCAGGCGATTGGTCTCCATCTCCCTCTCTCTCGCTCTCTCACATTTGCTCTTCTCCCCTGACCATGCTGTTGCTGGAGGCGTGTTCGATAAGTACGTGAAAAGGAAGAAGCTTGACCCGCTCGAGGCTTATGTATCACCGGTTATATTGACCCAGTTACAAATCAAGGACTTGGAGAAAACTCTGGAAGATGATCAGCCGCAGTTTGCTACCTGTCGGTCTCTACTGCGCTCCGGCCCTGCAGCGTCTCTTCGTGTTAATATTAGAGCTGTGGCACAATATGCTTCAGACAGTGGCGATGGGAAAACTGCATCTACCAGTGTCGATCAATGTCTCAGGGCCTTGGAGGAACTAGATAACTTGCTTTTACGCGCCACAAGAAATGACCCAGGAGCTTCAGTCAATTCAATGAAGACACAGACCAATACTGCCCTCAATGCATTGGACAGCCTCCTCAAAACTGTGCCTTCAGATGTGCTAGACAAGGGGAAAGTCGCGGCCAATTCTTATAGGAGGTCATTAGAGAATGCAGATGTTGATATTTCAGACCCAGAACTGAAGGAATTGCAATCCATATTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

236

Amino Acids

25.64

Weight (kDa)

8.76

Isoelectric Point (pI)

47.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7880 PF25306 83 - 207 3.1e-55 Domain of unknown function (DUF7880)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012130)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G26340 AT2G26340
fragaria_vesca FvH4_2g30980 FvH4_2g30980 FvH4_2g30980 FvH4_2g30980
malus_domestica MD08G1071400.v1.1 MD15G1049800.v1.1
prunus_persica Prupe.1G404100_v2.0.a1
pyrus_communis pycom08g05930
rosa_chinensis RchiOBHm_Chr6g0311811
rosa_laevigata RLG00000010372
rosa_multiflora Rmu_sc0002888.1_g000044
rosa_roxburghii Rroxscaffold_7G00157290
rosa_samantha Rh6AG507200 Rh6BG518200 Rh6CG523700 Rh6DG509500
rosa_wichuraiana Rw6G044130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 2 cut(s) 30, 103
AccBSI CCGCTC 1 cut(s) 250
AccII CGCG 2 cut(s) 501, 626
AciI CCGC 4 cut(s) 124, 248, 329, 626
AcoI YGGCCR 2 cut(s) 89, 627
AcuI CTGAAG 4 cut(s) 399, 510, 582, 707
AfaI GTAC 1 cut(s) 224
AfiI CCNNNNNNNGG 2 cut(s) 120, 253
AgeI ACCGGT 1 cut(s) 268
AgsI TTSAA 1 cut(s) 537
AjnI CCWGG 1 cut(s) 517
AluBI AGCT 3 cut(s) 241, 398, 524
AluI AGCT 3 cut(s) 241, 398, 524
Alw26I GTCTC 5 cut(s) 70, 148, 354, 381, 467
Ama87I CYCGRG 1 cut(s) 251
AoxI GGCC 4 cut(s) 89, 364, 468, 627
ApeKI GCWGC 1 cut(s) 371
AsiGI ACCGGT 1 cut(s) 268
Asp700I GAANNNNTTC 1 cut(s) 47
AspLEI GCGC 5 cut(s) 23, 31, 104, 360, 503
AspS9I GGNCC 2 cut(s) 365, 468
AsuHPI GGTGA 2 cut(s) 102, 258
AvaI CYCGRG 1 cut(s) 251
BbsI GAAGAC 1 cut(s) 548
BbvI GCAGC 1 cut(s) 383
BccI CCATC 2 cut(s) 155, 422
BciT130I CCWGG 1 cut(s) 519
BclI TGATCA 1 cut(s) 322
BcoDI GTCTC 5 cut(s) 70, 148, 354, 381, 467
BfaI CTAG 3 cut(s) 6, 482, 608
BfmI CTRYAG 1 cut(s) 369
BfoI RGCGCY 1 cut(s) 24
BisI GCNGC 3 cut(s) 329, 372, 627
BlsI GCNGC 3 cut(s) 330, 373, 628
Bme1390I CCNGG 1 cut(s) 519
BmeT110I CYCGRG 1 cut(s) 251
BmgT120I GGNCC 2 cut(s) 365, 468
BmrFI CCNGG 1 cut(s) 519
BmrI ACTGGG 1 cut(s) 277
BmsI GCATC 1 cut(s) 449
BmuI ACTGGG 1 cut(s) 277
BpiI GAAGAC 1 cut(s) 548
BpmI CTGGAG 1 cut(s) 225
BsaAI YACGTR 1 cut(s) 226
BsaI GGTCTC 2 cut(s) 148, 354
BsaJI CCNNGG 2 cut(s) 471, 517
BsaWI WCCGGW 1 cut(s) 268
BsaXI ACNNNNNCTCC 2 cut(s) 513, 543
Bsc4I CCNNNNNNNGG 2 cut(s) 120, 253
Bse118I RCCGGY 1 cut(s) 268
Bse1I ACTGG 3 cut(s) 92, 283, 447
BseBI CCWGG 1 cut(s) 519
BseDI CCNNGG 2 cut(s) 471, 517
BseLI CCNNNNNNNGG 2 cut(s) 120, 253
BseMII CTCAG 2 cut(s) 8, 478
BseNI ACTGG 3 cut(s) 92, 283, 447
BseRI GAGGAG 1 cut(s) 572
BseXI GCAGC 1 cut(s) 383
Bsh1236I CGCG 2 cut(s) 501, 626
BshFI GGCC 4 cut(s) 91, 366, 470, 629
BshTI ACCGGT 1 cut(s) 268
BsiHKCI CYCGRG 1 cut(s) 251
BsiSI CCGG 3 cut(s) 88, 269, 363
BslI CCNNNNNNNGG 2 cut(s) 120, 253
BsmAI GTCTC 5 cut(s) 70, 148, 354, 381, 467
BsmBI CGTCTC 2 cut(s) 70, 381
BsmI GAATGC 1 cut(s) 661
BsnI GGCC 4 cut(s) 91, 366, 470, 629
Bso31I GGTCTC 2 cut(s) 148, 354
BsoBI CYCGRG 1 cut(s) 251
Bsp143I GATC 2 cut(s) 322, 454
BspACI CCGC 4 cut(s) 124, 248, 329, 626
BspANI GGCC 4 cut(s) 91, 366, 470, 629
BspCNI CTCAG 2 cut(s) 9, 477
BspFNI CGCG 2 cut(s) 501, 626
BspMAI CTGCAG 1 cut(s) 373
BspQI GCTCTTC 1 cut(s) 185
BspTNI GGTCTC 2 cut(s) 148, 354
BsrBI CCGCTC 1 cut(s) 250
BsrFI RCCGGY 1 cut(s) 268
BsrI ACTGG 3 cut(s) 92, 283, 447
BssAI RCCGGY 1 cut(s) 268
BssECI CCNNGG 2 cut(s) 471, 517
BssMI GATC 2 cut(s) 322, 454
BssT1I CCWWGG 1 cut(s) 471
Bst2UI CCWGG 1 cut(s) 519
Bst4CI ACNGT 4 cut(s) 64, 108, 422, 592
Bst6I CTCTTC 2 cut(s) 185, 384
BstAPI GCANNNNNTGC 1 cut(s) 410
BstBAI YACGTR 1 cut(s) 226
BstC8I GCNNGC 1 cut(s) 134
BstDEI CTNAG 2 cut(s) 17, 464
BstFNI CGCG 2 cut(s) 501, 626
BstH2I RGCGCY 1 cut(s) 24
BstHHI GCGC 5 cut(s) 23, 31, 104, 360, 503
BstKTI GATC 2 cut(s) 325, 457
BstMAI GTCTC 5 cut(s) 70, 148, 354, 381, 467
BstMBI GATC 2 cut(s) 322, 454
BstMWI GCNNNNNNNGC 3 cut(s) 247, 410, 566
BstNI CCWGG 1 cut(s) 519
BstSCI CCNGG 1 cut(s) 517
BstSFI CTRYAG 1 cut(s) 369
BstUI CGCG 2 cut(s) 501, 626
BstV1I GCAGC 1 cut(s) 383
BstV2I GAAGAC 1 cut(s) 548
BsuRI GGCC 4 cut(s) 91, 366, 470, 629
BtgZI GCGATG 1 cut(s) 441
BtsI GCAGTG 1 cut(s) 24
BtsIMutI CAGTG 6 cut(s) 14, 24, 99, 104, 427, 454
Cac8I GCNNGC 1 cut(s) 134
CfoI GCGC 5 cut(s) 23, 31, 104, 360, 503
Cfr10I RCCGGY 1 cut(s) 268
Cfr13I GGNCC 2 cut(s) 365, 468
CseI GACGC 1 cut(s) 363
Csp6I GTAC 1 cut(s) 223
CspAI ACCGGT 1 cut(s) 268
CviAII CATG 1 cut(s) 194
CviQI GTAC 1 cut(s) 223
DdeI CTNAG 2 cut(s) 17, 464
DpnI GATC 2 cut(s) 324, 456
DpnII GATC 2 cut(s) 322, 454
EaeI YGGCCR 2 cut(s) 89, 627
Eam1104I CTCTTC 2 cut(s) 185, 384
EarI CTCTTC 2 cut(s) 185, 384
Eco130I CCWWGG 1 cut(s) 471
Eco31I GGTCTC 2 cut(s) 148, 354
Eco57I CTGAAG 4 cut(s) 399, 510, 582, 707
Eco88I CYCGRG 1 cut(s) 251
EcoO109I RGGNCCY 1 cut(s) 468
EcoRII CCWGG 1 cut(s) 517
EcoT14I CCWWGG 1 cut(s) 471
EcoT22I ATGCAT 1 cut(s) 571
ErhI CCWWGG 1 cut(s) 471
Esp3I CGTCTC 2 cut(s) 70, 381
FaeI CATG 1 cut(s) 197
FaiI YATR 7 cut(s) 195, 261, 275, 411, 639, 704, 709
FatI CATG 1 cut(s) 193
FauI CCCGC 2 cut(s) 117, 255
FbaI TGATCA 1 cut(s) 322
Fnu4HI GCNGC 3 cut(s) 329, 372, 627
Fsp4HI GCNGC 3 cut(s) 329, 372, 627
FspAI RTGCGCAY 1 cut(s) 103
FspBI CTAG 3 cut(s) 6, 482, 608
FspI TGCGCA 2 cut(s) 30, 103
GlaI GCGC 5 cut(s) 22, 30, 103, 359, 502
GluI GCNGC 3 cut(s) 329, 372, 627
GsuI CTGGAG 1 cut(s) 225
HaeII RGCGCY 1 cut(s) 24
HaeIII GGCC 4 cut(s) 91, 366, 470, 629
HapII CCGG 3 cut(s) 88, 269, 363
HgaI GACGC 1 cut(s) 363
HhaI GCGC 5 cut(s) 23, 31, 104, 360, 503
Hin1II CATG 1 cut(s) 197
Hin6I GCGC 5 cut(s) 21, 29, 102, 358, 501
HinP1I GCGC 5 cut(s) 21, 29, 102, 358, 501
HindIII AAGCTT 1 cut(s) 239
HpaII CCGG 3 cut(s) 88, 269, 363
HphI GGTGA 2 cut(s) 102, 258
Hpy188I TCNGA 3 cut(s) 418, 601, 676
Hpy188III TCNNGA 1 cut(s) 314
HpyAV CCTTC 3 cut(s) 58, 606, 682
HpyCH4III ACNGT 4 cut(s) 64, 108, 422, 592
HpyCH4IV ACGT 2 cut(s) 33, 225
HpyCH4V TGCA 5 cut(s) 371, 440, 569, 659, 697
HpyF10VI GCNNNNNNNGC 3 cut(s) 247, 410, 566
HpyF3I CTNAG 2 cut(s) 17, 464
HpySE526I ACGT 2 cut(s) 33, 225
Hsp92II CATG 1 cut(s) 197
HspAI GCGC 5 cut(s) 21, 29, 102, 358, 501
Ksp22I TGATCA 1 cut(s) 322
Kzo9I GATC 2 cut(s) 322, 454
LguI GCTCTTC 1 cut(s) 185
LmnI GCTCC 2 cut(s) 365, 521
Lsp1109I GCAGC 1 cut(s) 383
LweI GCATC 1 cut(s) 449
MaeI CTAG 3 cut(s) 6, 482, 608
MaeII ACGT 2 cut(s) 33, 225
MaeIII GTNAC 2 cut(s) 108, 285
MalI GATC 2 cut(s) 324, 456
MbiI CCGCTC 1 cut(s) 250
MboI GATC 2 cut(s) 322, 454
MboII GAAGA 5 cut(s) 172, 247, 329, 371, 553
MluCI AATT 4 cut(s) 118, 532, 631, 692
Mph1103I ATGCAT 1 cut(s) 571
MroXI GAANNNNTTC 1 cut(s) 47
MseI TTAA 1 cut(s) 387
MspI CCGG 3 cut(s) 88, 269, 363
MspR9I CCNGG 1 cut(s) 519
Mva1269I GAATGC 1 cut(s) 661
MvaI CCWGG 1 cut(s) 519
MvnI CGCG 2 cut(s) 501, 626
MwoI GCNNNNNNNGC 3 cut(s) 247, 410, 566
NdeII GATC 2 cut(s) 322, 454
NlaIII CATG 1 cut(s) 197
NmuCI GTSAC 1 cut(s) 108
NsbI TGCGCA 2 cut(s) 30, 103
NsiI ATGCAT 1 cut(s) 571
PaeR7I CTCGAG 1 cut(s) 251
PciSI GCTCTTC 1 cut(s) 185
PcsI WCGNNNNNNNCGW 1 cut(s) 222
PctI GAATGC 1 cut(s) 661
PdmI GAANNNNTTC 1 cut(s) 47
PinAI ACCGGT 1 cut(s) 268
PkrI GCNGC 3 cut(s) 330, 373, 628
Ppu21I YACGTR 1 cut(s) 226
Psp6I CCWGG 1 cut(s) 517
PspGI CCWGG 1 cut(s) 517
PspPI GGNCC 2 cut(s) 365, 468
PspXI VCTCGAGB 1 cut(s) 251
PstI CTGCAG 1 cut(s) 373
RsaI GTAC 1 cut(s) 224
RsaNI GTAC 1 cut(s) 223
SapI GCTCTTC 1 cut(s) 185
SaqAI TTAA 1 cut(s) 387
SatI GCNGC 3 cut(s) 329, 372, 627
Sau3AI GATC 2 cut(s) 322, 454
Sau96I GGNCC 2 cut(s) 365, 468
ScrFI CCNGG 1 cut(s) 519
SetI ASST 8 cut(s) 36, 101, 228, 243, 344, 400, 526, 647
SfaNI GCATC 1 cut(s) 449
SfcI CTRYAG 1 cut(s) 369
Sfr274I CTCGAG 1 cut(s) 251
SlaI CTCGAG 1 cut(s) 251
SmlI CTYRAG 1 cut(s) 251
SmoI CTYRAG 1 cut(s) 251
Sse9I AATT 4 cut(s) 118, 532, 631, 692
SsiI CCGC 4 cut(s) 124, 248, 329, 626
SspI AATATT 1 cut(s) 391
SspMI CTAG 3 cut(s) 6, 482, 608
StyD4I CCNGG 1 cut(s) 517
StyI CCWWGG 1 cut(s) 471
TaaI ACNGT 4 cut(s) 64, 108, 422, 592
TaiI ACGT 2 cut(s) 36, 228
TaqI TCGA 3 cut(s) 216, 252, 453
TaqII GACCGA 1 cut(s) 336
TasI AATT 4 cut(s) 118, 532, 631, 692
TauI GCSGC 2 cut(s) 331, 629
Tru1I TTAA 1 cut(s) 387
Tru9I TTAA 1 cut(s) 387
TscAI CASTG 6 cut(s) 21, 31, 99, 111, 427, 454
TseFI GTSAC 1 cut(s) 108
TseI GCWGC 1 cut(s) 371
Tsp45I GTSAC 1 cut(s) 108
TspDTI ATGAA 1 cut(s) 554
TspRI CASTG 6 cut(s) 21, 31, 99, 111, 427, 454
XcmI CCANNNNNNNNNTGG 1 cut(s) 200
XhoI CTCGAG 1 cut(s) 251
XmnI GAANNNNTTC 1 cut(s) 47
XspI CTAG 3 cut(s) 6, 482, 608
Zsp2I ATGCAT 1 cut(s) 571
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.