MD08G1071400.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
OG0012130
Physical Location & Seq
Reverse (-)
5668406 .. 5669019
614 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1071400.v1.1.491

Sequence Viewer

Length: 303 bp
ATGCCTAAATATGATAAACTCAGGAAAAAACTCGACCCTCTCGAGGCTTATGTATCGCCAGTCATATTAACCCAATTACAAATCAAGGACTTTGAGAAATCTCTGGAAGGTGACCAACCCCAGTTTGCTACTTGCCGGTCTCTGCTGCGTTCAGGCCCGGCAGCATCACTTCGCGTAAATATTCGAGCTGTAAGGTGGTGCGGTATGCTTCAGACGATGATGGCAATGGGAAAACCGCTTCAAGCGATGTTGATCAATGTCTCAGGTACCATCACTGTCCCGGCGAAAACATGGCTCTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

101

Amino Acids

11.25

Weight (kDa)

9.86

Isoelectric Point (pI)

61.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7880 PF25306 13 - 64 9.1e-19 Domain of unknown function (DUF7880)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012130)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G26340 AT2G26340
fragaria_vesca FvH4_2g30980 FvH4_2g30980 FvH4_2g30980 FvH4_2g30980
malus_domestica MD08G1071400.v1.1 MD15G1049800.v1.1
prunus_persica Prupe.1G404100_v2.0.a1
pyrus_communis pycom08g05930
rosa_chinensis RchiOBHm_Chr6g0311811
rosa_laevigata RLG00000010372
rosa_multiflora Rmu_sc0002888.1_g000044
rosa_roxburghii Rroxscaffold_7G00157290
rosa_samantha Rh6AG507200 Rh6BG518200 Rh6CG523700 Rh6DG509500
rosa_wichuraiana Rw6G044130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 266
AccB1I GGYRCC 1 cut(s) 266
AccII CGCG 1 cut(s) 174
AciI CCGC 2 cut(s) 201, 236
AcuI CTGAAG 1 cut(s) 194
AfaI GTAC 1 cut(s) 268
AfiI CCNNNNNNNGG 1 cut(s) 43
AgsI TTSAA 1 cut(s) 242
AluBI AGCT 1 cut(s) 188
AluI AGCT 1 cut(s) 188
Alw26I GTCTC 2 cut(s) 144, 265
Ama87I CYCGRG 1 cut(s) 41
AoxI GGCC 1 cut(s) 154
ApeKI GCWGC 2 cut(s) 145, 161
Asp718I GGTACC 1 cut(s) 266
AspS9I GGNCC 1 cut(s) 155
AsuC2I CCSGG 2 cut(s) 158, 281
AsuHPI GGTGA 1 cut(s) 122
AvaI CYCGRG 1 cut(s) 41
BanI GGYRCC 1 cut(s) 266
BbvI GCAGC 2 cut(s) 132, 173
BccI CCATC 2 cut(s) 214, 278
BclI TGATCA 1 cut(s) 252
BcnI CCSGG 2 cut(s) 158, 281
BcoDI GTCTC 2 cut(s) 144, 265
BisI GCNGC 2 cut(s) 146, 162
BlsI GCNGC 2 cut(s) 147, 163
Bme1390I CCNGG 2 cut(s) 158, 281
BmeT110I CYCGRG 1 cut(s) 41
BmgT120I GGNCC 1 cut(s) 155
BmiI GGNNCC 1 cut(s) 268
BmrFI CCNGG 2 cut(s) 158, 281
BmrI ACTGGG 1 cut(s) 115
BmsI GCATC 1 cut(s) 173
BmuI ACTGGG 1 cut(s) 115
BpuMI CCSGG 2 cut(s) 158, 281
BsaBI GATNNNNATC 1 cut(s) 251
BsaI GGTCTC 1 cut(s) 144
Bsc4I CCNNNNNNNGG 1 cut(s) 43
Bse118I RCCGGY 1 cut(s) 135
Bse1I ACTGG 2 cut(s) 59, 121
Bse3DI GCAATG 1 cut(s) 231
Bse8I GATNNNNATC 1 cut(s) 251
BseJI GATNNNNATC 1 cut(s) 251
BseLI CCNNNNNNNGG 1 cut(s) 43
BseMI GCAATG 1 cut(s) 231
BseMII CTCAG 2 cut(s) 34, 276
BseNI ACTGG 2 cut(s) 59, 121
BseXI GCAGC 2 cut(s) 132, 173
Bsh1236I CGCG 1 cut(s) 174
BshFI GGCC 1 cut(s) 156
BshNI GGYRCC 1 cut(s) 266
BsiHKCI CYCGRG 1 cut(s) 41
BsiSI CCGG 3 cut(s) 136, 158, 281
BslFI GGGAC 1 cut(s) 263
BslI CCNNNNNNNGG 1 cut(s) 43
BsmAI GTCTC 2 cut(s) 144, 265
BsmFI GGGAC 1 cut(s) 263
BsnI GGCC 1 cut(s) 156
Bso31I GGTCTC 1 cut(s) 144
BsoBI CYCGRG 1 cut(s) 41
Bsp143I GATC 1 cut(s) 252
BspACI CCGC 2 cut(s) 201, 236
BspANI GGCC 1 cut(s) 156
BspCNI CTCAG 2 cut(s) 33, 275
BspFNI CGCG 1 cut(s) 174
BspLI GGNNCC 1 cut(s) 268
BspT107I GGYRCC 1 cut(s) 266
BspTNI GGTCTC 1 cut(s) 144
BsrDI GCAATG 1 cut(s) 231
BsrFI RCCGGY 1 cut(s) 135
BsrI ACTGG 2 cut(s) 59, 121
BssAI RCCGGY 1 cut(s) 135
BssMI GATC 1 cut(s) 252
Bst4CI ACNGT 1 cut(s) 277
BstDEI CTNAG 2 cut(s) 20, 262
BstEII GGTNACC 1 cut(s) 110
BstFNI CGCG 1 cut(s) 174
BstKTI GATC 1 cut(s) 255
BstMAI GTCTC 2 cut(s) 144, 265
BstMBI GATC 1 cut(s) 252
BstPI GGTNACC 1 cut(s) 110
BstSCI CCNGG 2 cut(s) 156, 279
BstUI CGCG 1 cut(s) 174
BstV1I GCAGC 2 cut(s) 132, 173
BsuRI GGCC 1 cut(s) 156
BtgZI GCGATG 1 cut(s) 260
BtsIMutI CAGTG 1 cut(s) 273
Cfr10I RCCGGY 1 cut(s) 135
Cfr13I GGNCC 1 cut(s) 155
Csp6I GTAC 1 cut(s) 267
CviAII CATG 1 cut(s) 291
CviJI RGCY 4 cut(s) 47, 156, 188, 295
CviKI_1 RGCY 4 cut(s) 47, 156, 188, 295
CviQI GTAC 1 cut(s) 267
DdeI CTNAG 2 cut(s) 20, 262
DpnI GATC 1 cut(s) 254
DpnII GATC 1 cut(s) 252
Eco31I GGTCTC 1 cut(s) 144
Eco57I CTGAAG 1 cut(s) 194
Eco88I CYCGRG 1 cut(s) 41
Eco91I GGTNACC 1 cut(s) 110
EcoO65I GGTNACC 1 cut(s) 110
FaeI CATG 1 cut(s) 294
FaiI YATR 5 cut(s) 12, 51, 65, 206, 292
FaqI GGGAC 1 cut(s) 263
FatI CATG 1 cut(s) 290
FbaI TGATCA 1 cut(s) 252
Fnu4HI GCNGC 2 cut(s) 146, 162
Fsp4HI GCNGC 2 cut(s) 146, 162
GluI GCNGC 2 cut(s) 146, 162
HaeIII GGCC 1 cut(s) 156
HapII CCGG 3 cut(s) 136, 158, 281
Hin1II CATG 1 cut(s) 294
HpaII CCGG 3 cut(s) 136, 158, 281
HphI GGTGA 1 cut(s) 122
Hpy188I TCNGA 2 cut(s) 213, 302
Hpy188III TCNNGA 3 cut(s) 22, 41, 104
HpyAV CCTTC 1 cut(s) 101
HpyCH4III ACNGT 1 cut(s) 277
HpyF3I CTNAG 2 cut(s) 20, 262
Hsp92II CATG 1 cut(s) 294
KpnI GGTACC 1 cut(s) 270
Ksp22I TGATCA 1 cut(s) 252
Kzo9I GATC 1 cut(s) 252
LpnPI CCDG 9 cut(s) 7, 72, 89, 134, 138, 149, 171, 249, 294
Lsp1109I GCAGC 2 cut(s) 132, 173
LweI GCATC 1 cut(s) 173
MaeIII GTNAC 1 cut(s) 110
MalI GATC 1 cut(s) 254
MboI GATC 1 cut(s) 252
MboII GAAGA 1 cut(s) 289
MluCI AATT 1 cut(s) 74
MnlI CCTC 2 cut(s) 37, 48
MseI TTAA 1 cut(s) 68
MspI CCGG 3 cut(s) 136, 158, 281
MspR9I CCNGG 2 cut(s) 158, 281
MvnI CGCG 1 cut(s) 174
NciI CCSGG 2 cut(s) 158, 281
NdeII GATC 1 cut(s) 252
NlaIII CATG 1 cut(s) 294
NlaIV GGNNCC 1 cut(s) 268
NmuCI GTSAC 1 cut(s) 110
PaeR7I CTCGAG 1 cut(s) 41
PcsI WCGNNNNNNNCGW 1 cut(s) 39
PkrI GCNGC 2 cut(s) 147, 163
PspEI GGTNACC 1 cut(s) 110
PspN4I GGNNCC 1 cut(s) 268
PspPI GGNCC 1 cut(s) 155
RsaI GTAC 1 cut(s) 268
RsaNI GTAC 1 cut(s) 267
SaqAI TTAA 1 cut(s) 68
SatI GCNGC 2 cut(s) 146, 162
Sau3AI GATC 1 cut(s) 252
Sau96I GGNCC 1 cut(s) 155
ScrFI CCNGG 2 cut(s) 158, 281
SetI ASST 4 cut(s) 112, 190, 197, 268
SfaNI GCATC 1 cut(s) 173
Sfr274I CTCGAG 1 cut(s) 41
SlaI CTCGAG 1 cut(s) 41
SmlI CTYRAG 1 cut(s) 41
SmoI CTYRAG 1 cut(s) 41
Sse9I AATT 1 cut(s) 74
SsiI CCGC 2 cut(s) 201, 236
SspI AATATT 1 cut(s) 181
StyD4I CCNGG 2 cut(s) 156, 279
TaaI ACNGT 1 cut(s) 277
TaqI TCGA 3 cut(s) 33, 42, 184
TasI AATT 1 cut(s) 74
Tru1I TTAA 1 cut(s) 68
Tru9I TTAA 1 cut(s) 68
TscAI CASTG 1 cut(s) 280
TseFI GTSAC 1 cut(s) 110
TseI GCWGC 2 cut(s) 145, 161
Tsp45I GTSAC 1 cut(s) 110
TspRI CASTG 1 cut(s) 280
XhoI CTCGAG 1 cut(s) 41
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.