Rh6DG509500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0012130
Physical Location & Seq
Reverse (-)
66314855 .. 66316682
1828 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG509500.1

Sequence Viewer

Length: 705 bp
ATGGCTACACTGAACGCCACTGCGCACGTTAGCACGAACCCCTTCAGTTCCTCAACCGTCTCTATTAGAGCAAACAAGTTCCGGCCAGTGAGGAGCGCACTGTCACCCCCAAATTGGCGGGAAAGCAGGCGATTGGTCTCCATCTCCCTCTCTTTCGCTCTCTCACATTTGCTCATCTCCCCTGACCATGCTGTTGCTGGAGGCGTGTTCGATAAGTACGTGAAAAGGAAGAAGCTTGACCCGCTCGAGGCTTATGTATCACCGGTTATATTGACCCAGTTACAAATCAAGGACTTGGAGAAAACTCTGGAAGATGATCAGCCGCAGTTTGCTACCTGTCGGTCTCTACTGCGCTCCGGCCCTGCAGCGTCTCTTCGTGTTAATATTAGAGCTGTGGCACAATATGCTTCAGACAGTGGCGATGGGAAAATTGCCTCTACCAGTGTCGATCAATGTCTCAGGGCCTTGGAGGAACTAGATAACTTGCTTTTACGCGCCACAAGAAATGACCCAGGAGCTTCAGTCAGTTCAATGAAGACACAGACCAATACTGCCCTCAATGCATTGGACAGCCTCCTCAAAACTGTGCCTTCAGATGTGCTAGACAAGGGGAAGGTCGCGGCCAATTCTTATAGGAGGTCATTAGAGAATGCAGATGTTGATATTTCAGACCCAGAACTGAAGGAATTGCAATCCATATTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

234

Amino Acids

25.45

Weight (kDa)

8.86

Isoelectric Point (pI)

51.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7880 PF25306 81 - 205 1.6e-54 Domain of unknown function (DUF7880)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012130)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G26340 AT2G26340
fragaria_vesca FvH4_2g30980 FvH4_2g30980 FvH4_2g30980 FvH4_2g30980
malus_domestica MD08G1071400.v1.1 MD15G1049800.v1.1
prunus_persica Prupe.1G404100_v2.0.a1
pyrus_communis pycom08g05930
rosa_chinensis RchiOBHm_Chr6g0311811
rosa_laevigata RLG00000010372
rosa_multiflora Rmu_sc0002888.1_g000044
rosa_roxburghii Rroxscaffold_7G00157290
rosa_samantha Rh6AG507200 Rh6BG518200 Rh6CG523700 Rh6DG509500
rosa_wichuraiana Rw6G044130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 24
AccBSI CCGCTC 1 cut(s) 244
AccII CGCG 2 cut(s) 495, 620
AciI CCGC 4 cut(s) 118, 242, 323, 620
AcoI YGGCCR 2 cut(s) 83, 621
AcuI CTGAAG 5 cut(s) 28, 393, 504, 576, 701
AfaI GTAC 1 cut(s) 218
AfiI CCNNNNNNNGG 2 cut(s) 114, 247
AgeI ACCGGT 1 cut(s) 262
AgsI TTSAA 1 cut(s) 531
AjnI CCWGG 1 cut(s) 511
AluBI AGCT 3 cut(s) 235, 392, 518
AluI AGCT 3 cut(s) 235, 392, 518
Alw26I GTCTC 5 cut(s) 64, 142, 348, 375, 461
Ama87I CYCGRG 1 cut(s) 245
AoxI GGCC 4 cut(s) 83, 358, 462, 621
ApeKI GCWGC 1 cut(s) 365
AsiGI ACCGGT 1 cut(s) 262
Asp700I GAANNNNTTC 1 cut(s) 41
AspLEI GCGC 4 cut(s) 25, 98, 354, 497
AspS9I GGNCC 2 cut(s) 359, 462
AsuHPI GGTGA 2 cut(s) 96, 252
AvaI CYCGRG 1 cut(s) 245
BbsI GAAGAC 1 cut(s) 542
BbvI GCAGC 1 cut(s) 377
BccI CCATC 2 cut(s) 149, 416
BciT130I CCWGG 1 cut(s) 513
BclI TGATCA 1 cut(s) 316
BcoDI GTCTC 5 cut(s) 64, 142, 348, 375, 461
BfaI CTAG 2 cut(s) 476, 602
BfmI CTRYAG 1 cut(s) 363
BisI GCNGC 3 cut(s) 323, 366, 621
BlsI GCNGC 3 cut(s) 324, 367, 622
Bme1390I CCNGG 1 cut(s) 513
BmeT110I CYCGRG 1 cut(s) 245
BmgT120I GGNCC 2 cut(s) 359, 462
BmrFI CCNGG 1 cut(s) 513
BmrI ACTGGG 1 cut(s) 271
BmuI ACTGGG 1 cut(s) 271
BpiI GAAGAC 1 cut(s) 542
BpmI CTGGAG 1 cut(s) 219
BsaAI YACGTR 1 cut(s) 220
BsaI GGTCTC 2 cut(s) 142, 348
BsaJI CCNNGG 2 cut(s) 465, 511
BsaWI WCCGGW 1 cut(s) 262
BsaXI ACNNNNNCTCC 2 cut(s) 507, 537
Bsc4I CCNNNNNNNGG 2 cut(s) 114, 247
Bse118I RCCGGY 1 cut(s) 262
Bse1I ACTGG 3 cut(s) 86, 277, 441
BseBI CCWGG 1 cut(s) 513
BseDI CCNNGG 2 cut(s) 465, 511
BseLI CCNNNNNNNGG 2 cut(s) 114, 247
BseMII CTCAG 1 cut(s) 472
BseNI ACTGG 3 cut(s) 86, 277, 441
BseRI GAGGAG 2 cut(s) 106, 566
BseXI GCAGC 1 cut(s) 377
Bsh1236I CGCG 2 cut(s) 495, 620
BshFI GGCC 4 cut(s) 85, 360, 464, 623
BshTI ACCGGT 1 cut(s) 262
BsiHKCI CYCGRG 1 cut(s) 245
BsiSI CCGG 3 cut(s) 82, 263, 357
BslI CCNNNNNNNGG 2 cut(s) 114, 247
BsmAI GTCTC 5 cut(s) 64, 142, 348, 375, 461
BsmBI CGTCTC 2 cut(s) 64, 375
BsmI GAATGC 1 cut(s) 655
BsnI GGCC 4 cut(s) 85, 360, 464, 623
Bso31I GGTCTC 2 cut(s) 142, 348
BsoBI CYCGRG 1 cut(s) 245
Bsp143I GATC 2 cut(s) 316, 448
BspACI CCGC 4 cut(s) 118, 242, 323, 620
BspANI GGCC 4 cut(s) 85, 360, 464, 623
BspCNI CTCAG 1 cut(s) 471
BspFNI CGCG 2 cut(s) 495, 620
BspMAI CTGCAG 1 cut(s) 367
BspTNI GGTCTC 2 cut(s) 142, 348
BsrBI CCGCTC 1 cut(s) 244
BsrFI RCCGGY 1 cut(s) 262
BsrI ACTGG 3 cut(s) 86, 277, 441
BssAI RCCGGY 1 cut(s) 262
BssECI CCNNGG 2 cut(s) 465, 511
BssMI GATC 2 cut(s) 316, 448
BssT1I CCWWGG 1 cut(s) 465
Bst2UI CCWGG 1 cut(s) 513
Bst4CI ACNGT 4 cut(s) 58, 102, 416, 586
Bst6I CTCTTC 1 cut(s) 378
BstAPI GCANNNNNTGC 1 cut(s) 404
BstBAI YACGTR 1 cut(s) 220
BstC8I GCNNGC 1 cut(s) 128
BstDEI CTNAG 1 cut(s) 458
BstFNI CGCG 2 cut(s) 495, 620
BstHHI GCGC 4 cut(s) 25, 98, 354, 497
BstKTI GATC 2 cut(s) 319, 451
BstMAI GTCTC 5 cut(s) 64, 142, 348, 375, 461
BstMBI GATC 2 cut(s) 316, 448
BstMWI GCNNNNNNNGC 3 cut(s) 241, 404, 560
BstNI CCWGG 1 cut(s) 513
BstSCI CCNGG 1 cut(s) 511
BstSFI CTRYAG 1 cut(s) 363
BstUI CGCG 2 cut(s) 495, 620
BstV1I GCAGC 1 cut(s) 377
BstV2I GAAGAC 1 cut(s) 542
BsuRI GGCC 4 cut(s) 85, 360, 464, 623
BtgZI GCGATG 1 cut(s) 435
BtsI GCAGTG 1 cut(s) 18
BtsIMutI CAGTG 6 cut(s) 8, 18, 93, 98, 421, 448
Cac8I GCNNGC 1 cut(s) 128
CfoI GCGC 4 cut(s) 25, 98, 354, 497
Cfr10I RCCGGY 1 cut(s) 262
Cfr13I GGNCC 2 cut(s) 359, 462
CseI GACGC 1 cut(s) 357
Csp6I GTAC 1 cut(s) 217
CspAI ACCGGT 1 cut(s) 262
CviAII CATG 1 cut(s) 188
CviQI GTAC 1 cut(s) 217
DdeI CTNAG 1 cut(s) 458
DpnI GATC 2 cut(s) 318, 450
DpnII GATC 2 cut(s) 316, 448
EaeI YGGCCR 2 cut(s) 83, 621
Eam1104I CTCTTC 1 cut(s) 378
EarI CTCTTC 1 cut(s) 378
Eco130I CCWWGG 1 cut(s) 465
Eco31I GGTCTC 2 cut(s) 142, 348
Eco57I CTGAAG 5 cut(s) 28, 393, 504, 576, 701
Eco88I CYCGRG 1 cut(s) 245
EcoO109I RGGNCCY 1 cut(s) 462
EcoRII CCWGG 1 cut(s) 511
EcoT14I CCWWGG 1 cut(s) 465
EcoT22I ATGCAT 1 cut(s) 565
ErhI CCWWGG 1 cut(s) 465
Esp3I CGTCTC 2 cut(s) 64, 375
FaeI CATG 1 cut(s) 191
FaiI YATR 7 cut(s) 189, 255, 269, 405, 633, 698, 703
FatI CATG 1 cut(s) 187
FauI CCCGC 2 cut(s) 111, 249
FbaI TGATCA 1 cut(s) 316
Fnu4HI GCNGC 3 cut(s) 323, 366, 621
Fsp4HI GCNGC 3 cut(s) 323, 366, 621
FspBI CTAG 2 cut(s) 476, 602
FspI TGCGCA 1 cut(s) 24
GlaI GCGC 4 cut(s) 24, 97, 353, 496
GluI GCNGC 3 cut(s) 323, 366, 621
GsuI CTGGAG 1 cut(s) 219
HaeIII GGCC 4 cut(s) 85, 360, 464, 623
HapII CCGG 3 cut(s) 82, 263, 357
HgaI GACGC 1 cut(s) 357
HhaI GCGC 4 cut(s) 25, 98, 354, 497
Hin1II CATG 1 cut(s) 191
Hin6I GCGC 4 cut(s) 23, 96, 352, 495
HinP1I GCGC 4 cut(s) 23, 96, 352, 495
HindIII AAGCTT 1 cut(s) 233
HpaII CCGG 3 cut(s) 82, 263, 357
HphI GGTGA 2 cut(s) 96, 252
Hpy188I TCNGA 3 cut(s) 412, 595, 670
Hpy188III TCNNGA 1 cut(s) 308
HpyAV CCTTC 4 cut(s) 52, 600, 607, 676
HpyCH4III ACNGT 4 cut(s) 58, 102, 416, 586
HpyCH4IV ACGT 2 cut(s) 27, 219
HpyCH4V TGCA 4 cut(s) 365, 563, 653, 691
HpyF10VI GCNNNNNNNGC 3 cut(s) 241, 404, 560
HpyF3I CTNAG 1 cut(s) 458
HpySE526I ACGT 2 cut(s) 27, 219
Hsp92II CATG 1 cut(s) 191
HspAI GCGC 4 cut(s) 23, 96, 352, 495
Ksp22I TGATCA 1 cut(s) 316
Kzo9I GATC 2 cut(s) 316, 448
LmnI GCTCC 3 cut(s) 93, 359, 515
Lsp1109I GCAGC 1 cut(s) 377
MaeI CTAG 2 cut(s) 476, 602
MaeII ACGT 2 cut(s) 27, 219
MaeIII GTNAC 2 cut(s) 102, 279
MalI GATC 2 cut(s) 318, 450
MbiI CCGCTC 1 cut(s) 244
MboI GATC 2 cut(s) 316, 448
MboII GAAGA 4 cut(s) 241, 323, 365, 547
MluCI AATT 4 cut(s) 112, 429, 625, 686
Mph1103I ATGCAT 1 cut(s) 565
MroXI GAANNNNTTC 1 cut(s) 41
MseI TTAA 1 cut(s) 381
MspI CCGG 3 cut(s) 82, 263, 357
MspR9I CCNGG 1 cut(s) 513
Mva1269I GAATGC 1 cut(s) 655
MvaI CCWGG 1 cut(s) 513
MvnI CGCG 2 cut(s) 495, 620
MwoI GCNNNNNNNGC 3 cut(s) 241, 404, 560
NdeII GATC 2 cut(s) 316, 448
NlaIII CATG 1 cut(s) 191
NmuCI GTSAC 1 cut(s) 102
NsbI TGCGCA 1 cut(s) 24
NsiI ATGCAT 1 cut(s) 565
PaeR7I CTCGAG 1 cut(s) 245
PcsI WCGNNNNNNNCGW 1 cut(s) 216
PctI GAATGC 1 cut(s) 655
PdmI GAANNNNTTC 1 cut(s) 41
PinAI ACCGGT 1 cut(s) 262
PkrI GCNGC 3 cut(s) 324, 367, 622
Ppu21I YACGTR 1 cut(s) 220
Psp6I CCWGG 1 cut(s) 511
PspGI CCWGG 1 cut(s) 511
PspPI GGNCC 2 cut(s) 359, 462
PspXI VCTCGAGB 1 cut(s) 245
PstI CTGCAG 1 cut(s) 367
RsaI GTAC 1 cut(s) 218
RsaNI GTAC 1 cut(s) 217
SaqAI TTAA 1 cut(s) 381
SatI GCNGC 3 cut(s) 323, 366, 621
Sau3AI GATC 2 cut(s) 316, 448
Sau96I GGNCC 2 cut(s) 359, 462
ScrFI CCNGG 1 cut(s) 513
SetI ASST 8 cut(s) 30, 222, 237, 338, 394, 520, 618, 641
SfcI CTRYAG 1 cut(s) 363
Sfr274I CTCGAG 1 cut(s) 245
SlaI CTCGAG 1 cut(s) 245
SmlI CTYRAG 1 cut(s) 245
SmoI CTYRAG 1 cut(s) 245
Sse9I AATT 4 cut(s) 112, 429, 625, 686
SsiI CCGC 4 cut(s) 118, 242, 323, 620
SspI AATATT 1 cut(s) 385
SspMI CTAG 2 cut(s) 476, 602
StyD4I CCNGG 1 cut(s) 511
StyI CCWWGG 1 cut(s) 465
TaaI ACNGT 4 cut(s) 58, 102, 416, 586
TaiI ACGT 2 cut(s) 30, 222
TaqI TCGA 3 cut(s) 210, 246, 447
TaqII GACCGA 1 cut(s) 330
TasI AATT 4 cut(s) 112, 429, 625, 686
TauI GCSGC 2 cut(s) 325, 623
Tru1I TTAA 1 cut(s) 381
Tru9I TTAA 1 cut(s) 381
TscAI CASTG 6 cut(s) 15, 25, 93, 105, 421, 448
TseFI GTSAC 1 cut(s) 102
TseI GCWGC 1 cut(s) 365
Tsp45I GTSAC 1 cut(s) 102
TspDTI ATGAA 1 cut(s) 548
TspRI CASTG 6 cut(s) 15, 25, 93, 105, 421, 448
XcmI CCANNNNNNNNNTGG 1 cut(s) 194
XhoI CTCGAG 1 cut(s) 245
XmnI GAANNNNTTC 1 cut(s) 41
XspI CTAG 2 cut(s) 476, 602
Zsp2I ATGCAT 1 cut(s) 565
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.