FvH4_2g30980

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0012130
Physical Location & Seq
Forward (+)
23850910 .. 23853403
2494 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g30980.t3

Sequence Viewer

Length: 702 bp
ATGGCTACACTGAGCTCCACTGCGCATGTTAGCACCAACCCCTTCAGTTCATCAACCGTGTCTATTAAAGTACACAAGTTCCGGCCAGTGAGGTGCGCACTGTCACCCCCAAATTGGCGGGAAAGCAGGCGATTGGTCTCCGTTTCCCTCTCTCTCGTTCTCTCGCATTTGTTCTTCGTCCCTGATAATGCTGTTGCTGGAGGCTTTGATAAATACGTGAAAAGGAAAAAGCTTGATCCCCTTGAGGCTTATGTATCACCGGTTATATTGACCCAGTTACAAATCAAGGACTTGGAGAAATCTCTGGAAGGTGATCAGCCGCAGTATGCTACCTGTAGGTCTCTGCTACGCTCTGGCCCTGCAGCGTCTCTTCGTGTTAATATCAGAGCTGTGGCACAATATGCTTCAGACAGTGGAGATGGGAAAACTGCTTCTACAAGTGTTGATCAATGTCTCAGGGCCTTGGAGGAACTAGATAACTTGCTTTTACGCGCTACAAGAAATGACCCAGGAGCTTCAGTCAAGTCAATGAAGACACAGACCAATACTGCCCTTAATGCATTGGACAGCCTCCTCAAAACTGTGCCTTCAGACGTGCTAGACAAAGGGAAAGTTGCAGCTGATTCTTATAGGAGCTCATTAGAGAATGCTGATGTTGATATCTCAGACCCAGAACTGAGGGAATTGCAATCCATATTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

234

Amino Acids

25.34

Weight (kDa)

8.73

Isoelectric Point (pI)

48.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7880 PF25306 80 - 133 8.9e-19 Domain of unknown function (DUF7880)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012130)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G26340 AT2G26340
fragaria_vesca FvH4_2g30980 FvH4_2g30980 FvH4_2g30980 FvH4_2g30980
malus_domestica MD08G1071400.v1.1 MD15G1049800.v1.1
prunus_persica Prupe.1G404100_v2.0.a1
pyrus_communis pycom08g05930
rosa_chinensis RchiOBHm_Chr6g0311811
rosa_laevigata RLG00000010372
rosa_multiflora Rmu_sc0002888.1_g000044
rosa_roxburghii Rroxscaffold_7G00157290
rosa_samantha Rh6AG507200 Rh6BG518200 Rh6CG523700 Rh6DG509500
rosa_wichuraiana Rw6G044130

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 2 cut(s) 24, 97
AccII CGCG 1 cut(s) 492
AciI CCGC 2 cut(s) 118, 320
AclWI GGATC 1 cut(s) 230
AcoI YGGCCR 1 cut(s) 83
AcuI CTGAAG 4 cut(s) 28, 390, 501, 573
AfaI GTAC 1 cut(s) 72
AfiI CCNNNNNNNGG 1 cut(s) 114
AgeI ACCGGT 1 cut(s) 259
AjiI CACGTC 1 cut(s) 595
AjnI CCWGG 1 cut(s) 508
AluBI AGCT 6 cut(s) 15, 232, 389, 515, 620, 636
AluI AGCT 6 cut(s) 15, 232, 389, 515, 620, 636
Alw21I GWGCWC 2 cut(s) 17, 638
Alw26I GTCTC 4 cut(s) 142, 345, 372, 458
AlwI GGATC 1 cut(s) 230
AoxI GGCC 3 cut(s) 83, 355, 459
ApeKI GCWGC 2 cut(s) 362, 617
AsiGI ACCGGT 1 cut(s) 259
AspLEI GCGC 3 cut(s) 25, 98, 494
AspS9I GGNCC 2 cut(s) 356, 459
AsuHPI GGTGA 3 cut(s) 96, 249, 323
BanII GRGCYC 2 cut(s) 17, 638
BbsI GAAGAC 1 cut(s) 539
Bbv12I GWGCWC 2 cut(s) 17, 638
BbvI GCAGC 2 cut(s) 374, 629
BccI CCATC 1 cut(s) 413
BciT130I CCWGG 1 cut(s) 510
BclI TGATCA 2 cut(s) 313, 445
BcoDI GTCTC 4 cut(s) 142, 345, 372, 458
BfaI CTAG 2 cut(s) 473, 599
BfmI CTRYAG 2 cut(s) 334, 360
BisI GCNGC 3 cut(s) 320, 363, 618
BlsI GCNGC 3 cut(s) 321, 364, 619
Bme1390I CCNGG 1 cut(s) 510
BmgBI CACGTC 1 cut(s) 595
BmgT120I GGNCC 2 cut(s) 356, 459
BmrFI CCNGG 1 cut(s) 510
BmrI ACTGGG 1 cut(s) 268
BmuI ACTGGG 1 cut(s) 268
BpiI GAAGAC 1 cut(s) 539
BpmI CTGGAG 1 cut(s) 219
BpuEI CTTGAG 1 cut(s) 263
BsaAI YACGTR 1 cut(s) 217
BsaI GGTCTC 2 cut(s) 142, 345
BsaJI CCNNGG 2 cut(s) 462, 508
BsaWI WCCGGW 1 cut(s) 259
BsaXI ACNNNNNCTCC 2 cut(s) 504, 534
Bsc4I CCNNNNNNNGG 1 cut(s) 114
Bse118I RCCGGY 1 cut(s) 259
Bse1I ACTGG 2 cut(s) 86, 274
BseBI CCWGG 1 cut(s) 510
BseDI CCNNGG 2 cut(s) 462, 508
BseLI CCNNNNNNNGG 1 cut(s) 114
BseMII CTCAG 3 cut(s) 469, 668, 678
BseNI ACTGG 2 cut(s) 86, 274
BseRI GAGGAG 1 cut(s) 563
BseXI GCAGC 2 cut(s) 374, 629
Bsh1236I CGCG 1 cut(s) 492
BshFI GGCC 3 cut(s) 85, 357, 461
BshTI ACCGGT 1 cut(s) 259
BsiHKAI GWGCWC 2 cut(s) 17, 638
BsiSI CCGG 2 cut(s) 82, 260
BslFI GGGAC 1 cut(s) 164
BslI CCNNNNNNNGG 1 cut(s) 114
BsmAI GTCTC 4 cut(s) 142, 345, 372, 458
BsmBI CGTCTC 1 cut(s) 372
BsmFI GGGAC 1 cut(s) 164
BsmI GAATGC 1 cut(s) 652
BsnI GGCC 3 cut(s) 85, 357, 461
Bso31I GGTCTC 2 cut(s) 142, 345
Bsp1286I GDGCHC 2 cut(s) 17, 638
Bsp143I GATC 3 cut(s) 235, 313, 445
BspACI CCGC 2 cut(s) 118, 320
BspANI GGCC 3 cut(s) 85, 357, 461
BspCNI CTCAG 3 cut(s) 468, 669, 677
BspFNI CGCG 1 cut(s) 492
BspMAI CTGCAG 1 cut(s) 364
BspPI GGATC 1 cut(s) 230
BspTNI GGTCTC 2 cut(s) 142, 345
BsrFI RCCGGY 1 cut(s) 259
BsrI ACTGG 2 cut(s) 86, 274
BssAI RCCGGY 1 cut(s) 259
BssECI CCNNGG 2 cut(s) 462, 508
BssMI GATC 3 cut(s) 235, 313, 445
BssT1I CCWWGG 1 cut(s) 462
Bst2UI CCWGG 1 cut(s) 510
Bst4CI ACNGT 4 cut(s) 58, 102, 413, 583
Bst6I CTCTTC 1 cut(s) 375
BstAPI GCANNNNNTGC 1 cut(s) 401
BstBAI YACGTR 1 cut(s) 217
BstC8I GCNNGC 1 cut(s) 128
BstDEI CTNAG 4 cut(s) 11, 455, 664, 677
BstFNI CGCG 1 cut(s) 492
BstHHI GCGC 3 cut(s) 25, 98, 494
BstKTI GATC 3 cut(s) 238, 316, 448
BstMAI GTCTC 4 cut(s) 142, 345, 372, 458
BstMBI GATC 3 cut(s) 235, 313, 445
BstMWI GCNNNNNNNGC 2 cut(s) 401, 557
BstNI CCWGG 1 cut(s) 510
BstNSI RCATGY 1 cut(s) 29
BstSCI CCNGG 1 cut(s) 508
BstSFI CTRYAG 2 cut(s) 334, 360
BstUI CGCG 1 cut(s) 492
BstV1I GCAGC 2 cut(s) 374, 629
BstV2I GAAGAC 1 cut(s) 539
BsuRI GGCC 3 cut(s) 85, 357, 461
BtrI CACGTC 1 cut(s) 595
BtsI GCAGTG 1 cut(s) 18
BtsIMutI CAGTG 5 cut(s) 8, 18, 93, 98, 418
Cac8I GCNNGC 1 cut(s) 128
CfoI GCGC 3 cut(s) 25, 98, 494
Cfr10I RCCGGY 1 cut(s) 259
Cfr13I GGNCC 2 cut(s) 356, 459
CseI GACGC 1 cut(s) 354
Csp6I GTAC 1 cut(s) 71
CspAI ACCGGT 1 cut(s) 259
CviAII CATG 1 cut(s) 26
CviQI GTAC 1 cut(s) 71
DdeI CTNAG 4 cut(s) 11, 455, 664, 677
DpnI GATC 3 cut(s) 237, 315, 447
DpnII GATC 3 cut(s) 235, 313, 445
EaeI YGGCCR 1 cut(s) 83
Eam1104I CTCTTC 1 cut(s) 375
EarI CTCTTC 1 cut(s) 375
Ecl136II GAGCTC 2 cut(s) 15, 636
Eco130I CCWWGG 1 cut(s) 462
Eco24I GRGCYC 2 cut(s) 17, 638
Eco31I GGTCTC 2 cut(s) 142, 345
Eco32I GATATC 1 cut(s) 661
Eco53kI GAGCTC 2 cut(s) 15, 636
Eco57I CTGAAG 4 cut(s) 28, 390, 501, 573
EcoICRI GAGCTC 2 cut(s) 15, 636
EcoO109I RGGNCCY 1 cut(s) 459
EcoRII CCWGG 1 cut(s) 508
EcoRV GATATC 1 cut(s) 661
EcoT14I CCWWGG 1 cut(s) 462
EcoT22I ATGCAT 1 cut(s) 562
EcoT38I GRGCYC 2 cut(s) 17, 638
ErhI CCWWGG 1 cut(s) 462
Esp3I CGTCTC 1 cut(s) 372
FaeI CATG 1 cut(s) 29
FaiI YATR 8 cut(s) 27, 252, 266, 327, 402, 630, 695, 700
FaqI GGGAC 1 cut(s) 164
FatI CATG 1 cut(s) 25
FauI CCCGC 1 cut(s) 111
FbaI TGATCA 2 cut(s) 313, 445
Fnu4HI GCNGC 3 cut(s) 320, 363, 618
FriOI GRGCYC 2 cut(s) 17, 638
Fsp4HI GCNGC 3 cut(s) 320, 363, 618
FspAI RTGCGCAY 1 cut(s) 97
FspBI CTAG 2 cut(s) 473, 599
FspI TGCGCA 2 cut(s) 24, 97
GlaI GCGC 3 cut(s) 24, 97, 493
GluI GCNGC 3 cut(s) 320, 363, 618
GsuI CTGGAG 1 cut(s) 219
HaeIII GGCC 3 cut(s) 85, 357, 461
HapII CCGG 2 cut(s) 82, 260
HgaI GACGC 1 cut(s) 354
HhaI GCGC 3 cut(s) 25, 98, 494
Hin1II CATG 1 cut(s) 29
Hin6I GCGC 3 cut(s) 23, 96, 492
HinP1I GCGC 3 cut(s) 23, 96, 492
HindIII AAGCTT 1 cut(s) 230
HinfI GANTC 1 cut(s) 623
HpaII CCGG 2 cut(s) 82, 260
HphI GGTGA 3 cut(s) 96, 249, 323
Hpy166II GTNNAC 1 cut(s) 73
Hpy188I TCNGA 4 cut(s) 386, 409, 592, 667
Hpy188III TCNNGA 1 cut(s) 305
Hpy8I GTNNAC 1 cut(s) 73
HpyAV CCTTC 3 cut(s) 52, 302, 597
HpyCH4III ACNGT 4 cut(s) 58, 102, 413, 583
HpyCH4IV ACGT 2 cut(s) 216, 594
HpyCH4V TGCA 4 cut(s) 362, 560, 617, 688
HpyF10VI GCNNNNNNNGC 2 cut(s) 401, 557
HpyF3I CTNAG 4 cut(s) 11, 455, 664, 677
HpySE526I ACGT 2 cut(s) 216, 594
Hsp92II CATG 1 cut(s) 29
HspAI GCGC 3 cut(s) 23, 96, 492
Ksp22I TGATCA 2 cut(s) 313, 445
Kzo9I GATC 3 cut(s) 235, 313, 445
LmnI GCTCC 3 cut(s) 20, 512, 633
Lsp1109I GCAGC 2 cut(s) 374, 629
MaeI CTAG 2 cut(s) 473, 599
MaeII ACGT 2 cut(s) 216, 594
MaeIII GTNAC 2 cut(s) 102, 276
MalI GATC 3 cut(s) 237, 315, 447
MboI GATC 3 cut(s) 235, 313, 445
MboII GAAGA 3 cut(s) 166, 362, 544
MhlI GDGCHC 2 cut(s) 17, 638
MluCI AATT 2 cut(s) 112, 683
MnlI CCTC 8 cut(s) 84, 158, 194, 238, 460, 581, 584, 672
Mph1103I ATGCAT 1 cut(s) 562
MseI TTAA 3 cut(s) 66, 378, 555
MspA1I CMGCKG 1 cut(s) 620
MspI CCGG 2 cut(s) 82, 260
MspR9I CCNGG 1 cut(s) 510
Mva1269I GAATGC 1 cut(s) 652
MvaI CCWGG 1 cut(s) 510
MvnI CGCG 1 cut(s) 492
MwoI GCNNNNNNNGC 2 cut(s) 401, 557
NdeII GATC 3 cut(s) 235, 313, 445
NlaIII CATG 1 cut(s) 29
NmuCI GTSAC 1 cut(s) 102
NsbI TGCGCA 2 cut(s) 24, 97
NsiI ATGCAT 1 cut(s) 562
NspI RCATGY 1 cut(s) 29
PctI GAATGC 1 cut(s) 652
PfeI GAWTC 1 cut(s) 623
PinAI ACCGGT 1 cut(s) 259
PkrI GCNGC 3 cut(s) 321, 364, 619
Ppu21I YACGTR 1 cut(s) 217
Psp124BI GAGCTC 2 cut(s) 17, 638
Psp6I CCWGG 1 cut(s) 508
PspGI CCWGG 1 cut(s) 508
PspPI GGNCC 2 cut(s) 356, 459
PstI CTGCAG 1 cut(s) 364
PvuII CAGCTG 1 cut(s) 620
RsaI GTAC 1 cut(s) 72
RsaNI GTAC 1 cut(s) 71
SacI GAGCTC 2 cut(s) 17, 638
SaqAI TTAA 3 cut(s) 66, 378, 555
SatI GCNGC 3 cut(s) 320, 363, 618
Sau3AI GATC 3 cut(s) 235, 313, 445
Sau96I GGNCC 2 cut(s) 356, 459
ScrFI CCNGG 1 cut(s) 510
SduI GDGCHC 2 cut(s) 17, 638
SfcI CTRYAG 2 cut(s) 334, 360
SmlI CTYRAG 1 cut(s) 242
SmoI CTYRAG 1 cut(s) 242
Sse9I AATT 2 cut(s) 112, 683
SsiI CCGC 2 cut(s) 118, 320
SspMI CTAG 2 cut(s) 473, 599
SstI GAGCTC 2 cut(s) 17, 638
StyD4I CCNGG 1 cut(s) 508
StyI CCWWGG 1 cut(s) 462
TaaI ACNGT 4 cut(s) 58, 102, 413, 583
TaiI ACGT 2 cut(s) 219, 597
TasI AATT 2 cut(s) 112, 683
TatI WGTACW 1 cut(s) 70
TauI GCSGC 1 cut(s) 322
TfiI GAWTC 1 cut(s) 623
Tru1I TTAA 3 cut(s) 66, 378, 555
Tru9I TTAA 3 cut(s) 66, 378, 555
TscAI CASTG 5 cut(s) 15, 25, 93, 105, 418
TseFI GTSAC 1 cut(s) 102
TseI GCWGC 2 cut(s) 362, 617
Tsp45I GTSAC 1 cut(s) 102
TspDTI ATGAA 2 cut(s) 39, 545
TspGWI ACGGA 1 cut(s) 130
TspRI CASTG 5 cut(s) 15, 25, 93, 105, 418
XceI RCATGY 1 cut(s) 29
XspI CTAG 2 cut(s) 473, 599
Zsp2I ATGCAT 1 cut(s) 562
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.