AT2G26490

WD repeat-containing protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Forward (+)
11267857 .. 11269750
1894 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G26490.1

Sequence Viewer

Length: 1398 bp
ATGTTTACGGAAGCTGATAGCATTCCTAGGGCAAAATATGCCAACATGATGCATTCTGATCCGAATCTTTCCTCCACGATGACCCAACAAACAGAGGAAGAGTACGGTATACGCAATAGCAGTGCATCTGCGGTTGGCACGGGGATGTATGATAGAATGAGTTGCGAAGGTTCTCCAATGATGATGTCTCCTTGGAACCAAGCAACTCCATTTACTCAAACACAATGGTCTACTGTAGAAGAAAACCTACCCCAAAATGGCCTTATTGGCTCGCTTGTCCGTGAAGAAGGTCACATCTATTCATTAGCGGCCACAAAAGATCTTCTTTATACTGGCTCTGATAGCAAAAACATACGTGTGTGGAAGAATCTAAAGGAGTTCAGTGCATTCAAATGTAACAGTGGATTGGTTAAGGCCATTGTGATTTCAGGGGAGAAGATTTTCACAGGTCACCAAGACGGAAAGATTCGAGTTTGGAAAGTCTCCCCTAAGAACCAGAGCTTGCACAAACGTTCTGGAACATTACCAACTTTGAAAGATATATTCAAGGCATCTCTCAAACCAAGAAACTATGTTGAGGTGAAGAAACACCGCACTGCTCTCTGGATCAAACACGCCGATGCTGTTTCATGTTTAAGCCTAAATGATGAGCAAGGGTTGTTGTATTCTGCTTCATGGGACCGGACCATTAAGGTGTGGAGGATTGCTGATTCAAAATGTCTAGAATCAATCCCAGCTCATGATGATGCTGTAAACTCGGTGGTATCAACAACGGAAGCGATTGTTTTCTCTGGATCAGCCGATGGGACAGTCAAGGCATGGAAGAGAGACCAACAAGGAAAATACACAAAGCATACACTAATGCAAACATTAACAAAGCAAGAAAGCGCAGTCACAGCTTTGGCTGTAAGCAAGAATGGTGCGGCAGTGTACTTTGGTTCGAGTGATGGTTTGGTCAATTTTTGGGAGAGGGAGAAACAGTTGAACTACGGTGGTATTCTCAAGGGCCACAAGCTTGCTGTTCTTTGCCTAGAAGTGGCAGGGAGTCTTGTTTTTAGCGGATCTGCTGATAAGACAATATGTGTGTGGAAGAGAGATGGAAATATTCATACATGCCTCTCTGTACTAACAGGTCACACAGGTCCTGTGAAATGTTTGGCAGTAGAAGCAGACCGTGAAGCCTCCGAACGTCGGGACAAAAAATGGATTGTATATAGTGGAAGCTTGGATAAGTCAGTAAAAGTATGGGGAGTTTCAGAATCTTTCATTGACATGAACCAGATGAGTATGATGCAACAGCAACAACAGCAACATGTTATATCACATTCTGAACCATTCATGTCTGATGGCAGTTTCTCTTCATCAGCTGGTGGAGCTAGCAGCCATCGAAGACACTAA

Protein Analysis

465

Amino Acids

51.44

Weight (kDa)

8.9

Isoelectric Point (pI)

40.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_SCAP PF24017 54 - 325 1.3e-09 SCAP Beta-propeller
Beta-prop_THOC3 PF25174 143 - 389 4.2e-23 THOC3 beta-propeller domain
WDR55 PF24796 193 - 281 1e-07 WDR55
WD40_Gbeta PF25391 198 - 363 2e-11 G protein beta WD-40 repeat protein
Beta-prop_WDR5 PF25175 200 - 278 3.8e-14 WDR5 beta-propeller domain
Beta-prop_TEP1_2nd PF25047 200 - 277 1.1e-07 TEP-1 second beta-propeller
WD40_WDHD1_1st PF24817 201 - 289 4.1e-09 WDHD1 first WD40 domain
Beta-prop_WDR3_1st PF25173 202 - 280 2e-11 WDR3 first beta-propeller domain
WD40_CDC20-Fz PF24807 204 - 343 2.4e-12 CDC20/Fizzy WD40 domain
EIF3I PF24805 205 - 293 5.7e-06 EIF3I
Beta-prop_EML PF23409 205 - 389 2.5e-12 Echinoderm microtubule-associated protein first beta-propeller
Beta-prop_WDR3_2nd PF25172 205 - 325 1.1e-15 WDR3 second beta-propeller domain
WD40_MABP1-WDR62_2nd PF24782 207 - 391 5.1e-07 MABP1/WDR62 second WD40 domain
WD40_Prp19 PF24814 208 - 327 6.2e-15 Prp19 WD40 domain
NBCH_WD40 PF20426 209 - 280 7.9e-06 Neurobeachin beta propeller domain
Beta-prop_EML_2 PF23414 211 - 365 9.8e-11 Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR90_POC16_2nd PF23393 217 - 325 1.3e-06 WDR90/POC16, second beta-propeller
WD40_WDHD1_1st PF24817 281 - 364 7.6e-06 WDHD1 first WD40 domain
Beta-prop_WDR5 PF25175 284 - 421 4.6e-16 WDR5 beta-propeller domain
Beta-prop_WDR3_1st PF25173 284 - 422 4.4e-19 WDR3 first beta-propeller domain
WDR55 PF24796 287 - 419 5.4e-06 WDR55
WD40_WDHD1_1st PF24817 300 - 431 6.6e-07 WDHD1 first WD40 domain
Beta-prop_TEP1_2nd PF25047 310 - 400 3.4e-08 TEP-1 second beta-propeller
Beta-prop_WDR3_2nd PF25172 334 - 449 1e-06 WDR3 second beta-propeller domain
WD40_Prp19 PF24814 340 - 437 1.4e-08 Prp19 WD40 domain
Beta-prop_THOC3 PF25174 346 - 421 1.8e-07 THOC3 beta-propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0016067)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G26490
fragaria_vesca FvH4_2g40541
malus_domestica MD00G1038200.v1.1 MD08G1039100.v1.1
prunus_persica Prupe.1G386600_v2.0.a1
pyrus_communis pycom08g03080
rosa_chinensis RchiOBHm_Chr6g0300181
rosa_laevigata RLG00000011360
rosa_multiflora Rmu_sc0001670.1_g000038
rosa_roxburghii Rroxscaffold_7G00168030
rosa_samantha Rh6AG406000 Rh6BG414000 Rh6CG421200 Rh6DG406800
rosa_wichuraiana Rw6G035540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 109, 230
AciI CCGC 5 cut(s) 131, 308, 592, 923, 1059
AclI AACGTT 1 cut(s) 511
AclWI GGATC 4 cut(s) 53, 614, 802, 1069
AcoI YGGCCR 1 cut(s) 309
AfaI GTAC 3 cut(s) 104, 932, 1125
AfiI CCNNNNNNNGG 3 cut(s) 257, 1036, 1191
AflIII ACRYGT 2 cut(s) 355, 1312
AgsI TTSAA 5 cut(s) 391, 535, 547, 714, 985
AluBI AGCT 8 cut(s) 14, 501, 737, 899, 1015, 1224, 1367, 1376
AluI AGCT 8 cut(s) 14, 501, 737, 899, 1015, 1224, 1367, 1376
Alw26I GTCTC 3 cut(s) 192, 487, 822
AlwI GGATC 4 cut(s) 53, 614, 802, 1069
AlwNI CAGNNNCTG 1 cut(s) 1145
AoxI GGCC 4 cut(s) 259, 309, 414, 1006
ApeKI GCWGC 1 cut(s) 1380
Asp700I GAANNNNTTC 1 cut(s) 440
AspA2I CCTAGG 1 cut(s) 26
AspLEI GCGC 1 cut(s) 890
AspS9I GGNCC 4 cut(s) 679, 684, 1006, 1142
AsuHPI GGTGA 2 cut(s) 443, 592
AsuNHI GCTAGC 1 cut(s) 1376
AvaII GGWCC 3 cut(s) 679, 684, 1142
AvrII CCTAGG 1 cut(s) 26
BarI GAAGNNNNNNTAC 2 cut(s) 231, 263
BbvI GCAGC 1 cut(s) 1392
BccI CCATC 5 cut(s) 797, 941, 1091, 1340, 1392
BcoDI GTCTC 3 cut(s) 192, 487, 822
BfaI CTAG 4 cut(s) 27, 722, 1031, 1377
BfmI CTRYAG 1 cut(s) 234
BglI GCCNNNNNGGC 1 cut(s) 267
BglII AGATCT 1 cut(s) 319
BisI GCNGC 3 cut(s) 309, 924, 1381
BlnI CCTAGG 1 cut(s) 26
BlsI GCNGC 3 cut(s) 310, 925, 1382
Bme18I GGWCC 3 cut(s) 679, 684, 1142
BmgT120I GGNCC 4 cut(s) 679, 684, 1006, 1142
BmiI GGNNCC 2 cut(s) 197, 680
BmsI GCATC 6 cut(s) 39, 134, 560, 610, 736, 1281
BmtI GCTAGC 1 cut(s) 1380
BpuEI CTTGAG 1 cut(s) 986
BsaAI YACGTR 1 cut(s) 356
BsaBI GATNNNNATC 1 cut(s) 63
BsaI GGTCTC 1 cut(s) 822
BsaJI CCNNGG 2 cut(s) 26, 191
BsaWI WCCGGW 1 cut(s) 681
BsaXI ACNNNNNCTCC 2 cut(s) 965, 995
Bsc4I CCNNNNNNNGG 3 cut(s) 257, 1036, 1191
Bse1I ACTGG 1 cut(s) 337
Bse8I GATNNNNATC 1 cut(s) 63
BseDI CCNNGG 2 cut(s) 26, 191
BseGI GGATG 1 cut(s) 150
BseJI GATNNNNATC 1 cut(s) 63
BseLI CCNNNNNNNGG 3 cut(s) 257, 1036, 1191
BseNI ACTGG 1 cut(s) 337
BseXI GCAGC 1 cut(s) 1392
BseYI CCCAGC 1 cut(s) 733
BshFI GGCC 4 cut(s) 261, 311, 416, 1008
BsiSI CCGG 1 cut(s) 682
BslFI GGGAC 3 cut(s) 692, 820, 1208
BslI CCNNNNNNNGG 3 cut(s) 257, 1036, 1191
BsmAI GTCTC 3 cut(s) 192, 487, 822
BsmFI GGGAC 3 cut(s) 692, 820, 1208
BsmI GAATGC 3 cut(s) 21, 52, 386
BsnI GGCC 4 cut(s) 261, 311, 416, 1008
Bso31I GGTCTC 1 cut(s) 822
Bsp143I GATC 5 cut(s) 58, 319, 606, 794, 1061
BspACI CCGC 5 cut(s) 131, 308, 592, 923, 1059
BspANI GGCC 4 cut(s) 261, 311, 416, 1008
BspHI TCATGA 1 cut(s) 739
BspLI GGNNCC 2 cut(s) 197, 680
BspOI GCTAGC 1 cut(s) 1380
BspPI GGATC 4 cut(s) 53, 614, 802, 1069
BspTNI GGTCTC 1 cut(s) 822
BsrI ACTGG 1 cut(s) 337
BssECI CCNNGG 2 cut(s) 26, 191
BssMI GATC 5 cut(s) 58, 319, 606, 794, 1061
BssNAI GTATAC 1 cut(s) 110
BssT1I CCWWGG 2 cut(s) 26, 191
Bst1107I GTATAC 1 cut(s) 110
Bst4CI ACNGT 7 cut(s) 107, 235, 401, 811, 981, 992, 1175
Bst6I CTCTTC 4 cut(s) 93, 818, 1085, 1363
BstAPI GCANNNNNTGC 1 cut(s) 38
BstBAI YACGTR 1 cut(s) 356
BstC8I GCNNGC 4 cut(s) 272, 503, 1017, 1378
BstDEI CTNAG 1 cut(s) 489
BstEII GGTNACC 1 cut(s) 449
BstF5I GGATG 1 cut(s) 150
BstHHI GCGC 1 cut(s) 890
BstKTI GATC 5 cut(s) 61, 322, 609, 797, 1064
BstMAI GTCTC 3 cut(s) 192, 487, 822
BstMBI GATC 5 cut(s) 58, 319, 606, 794, 1061
BstMWI GCNNNNNNNGC 7 cut(s) 38, 267, 342, 896, 1166, 1306, 1373
BstNSI RCATGY 2 cut(s) 1116, 1316
BstPI GGTNACC 1 cut(s) 449
BstSFI CTRYAG 1 cut(s) 234
BstV1I GCAGC 1 cut(s) 1392
BstX2I RGATCY 2 cut(s) 319, 1061
BstYI RGATCY 2 cut(s) 319, 1061
BstZ17I GTATAC 1 cut(s) 110
BsuRI GGCC 4 cut(s) 261, 311, 416, 1008
BtsCI GGATG 1 cut(s) 150
BtsI GCAGTG 3 cut(s) 127, 594, 933
BtsIMutI CAGTG 5 cut(s) 127, 388, 406, 594, 933
Cac8I GCNNGC 4 cut(s) 272, 503, 1017, 1378
CaiI CAGNNNCTG 1 cut(s) 1145
CciI TCATGA 1 cut(s) 739
CfoI GCGC 1 cut(s) 890
Cfr13I GGNCC 4 cut(s) 679, 684, 1006, 1142
Csp6I GTAC 3 cut(s) 103, 931, 1124
CviAII CATG 9 cut(s) 46, 630, 675, 740, 819, 1113, 1273, 1313, 1339
CviQI GTAC 3 cut(s) 103, 931, 1124
DdeI CTNAG 1 cut(s) 489
DpnI GATC 5 cut(s) 60, 321, 608, 796, 1063
DpnII GATC 5 cut(s) 58, 319, 606, 794, 1061
EaeI YGGCCR 1 cut(s) 309
Eam1104I CTCTTC 4 cut(s) 93, 818, 1085, 1363
EarI CTCTTC 4 cut(s) 93, 818, 1085, 1363
Eco130I CCWWGG 2 cut(s) 26, 191
Eco31I GGTCTC 1 cut(s) 822
Eco47I GGWCC 3 cut(s) 679, 684, 1142
Eco91I GGTNACC 1 cut(s) 449
EcoO109I RGGNCCY 1 cut(s) 1142
EcoO65I GGTNACC 1 cut(s) 449
EcoT14I CCWWGG 2 cut(s) 26, 191
EcoT22I ATGCAT 1 cut(s) 54
ErhI CCWWGG 2 cut(s) 26, 191
FaeI CATG 9 cut(s) 49, 633, 678, 743, 822, 1116, 1276, 1316, 1342
FalI AAGNNNNNCTT 2 cut(s) 309, 341
FaqI GGGAC 3 cut(s) 692, 820, 1208
FatI CATG 9 cut(s) 45, 629, 674, 739, 818, 1112, 1272, 1312, 1338
FblI GTMKAC 2 cut(s) 109, 230
Fnu4HI GCNGC 3 cut(s) 309, 924, 1381
FokI GGATG 1 cut(s) 157
Fsp4HI GCNGC 3 cut(s) 309, 924, 1381
FspBI CTAG 4 cut(s) 27, 722, 1031, 1377
GlaI GCGC 1 cut(s) 889
GluI GCNGC 3 cut(s) 309, 924, 1381
GsaI CCCAGC 1 cut(s) 737
HaeIII GGCC 4 cut(s) 261, 311, 416, 1008
HapII CCGG 1 cut(s) 682
HhaI GCGC 1 cut(s) 890
Hin1II CATG 9 cut(s) 49, 633, 678, 743, 822, 1116, 1276, 1316, 1342
Hin6I GCGC 1 cut(s) 888
HinP1I GCGC 1 cut(s) 888
HindIII AAGCTT 2 cut(s) 1013, 1222
HinfI GANTC 7 cut(s) 64, 367, 466, 710, 725, 1045, 1259
HpaII CCGG 1 cut(s) 682
HphI GGTGA 2 cut(s) 443, 592
Hpy166II GTNNAC 5 cut(s) 6, 110, 231, 754, 931
Hpy188I TCNGA 7 cut(s) 58, 63, 340, 1186, 1258, 1330, 1345
Hpy188III TCNNGA 6 cut(s) 516, 604, 722, 740, 792, 1193
Hpy8I GTNNAC 5 cut(s) 6, 110, 231, 754, 931
Hpy99I CGWCG 1 cut(s) 1194
HpyAV CCTTC 2 cut(s) 161, 281
HpyCH4III ACNGT 7 cut(s) 107, 235, 401, 811, 981, 992, 1175
HpyCH4IV ACGT 3 cut(s) 355, 511, 1189
HpyCH4V TGCA 6 cut(s) 52, 125, 386, 505, 865, 1294
HpyF10VI GCNNNNNNNGC 7 cut(s) 38, 267, 342, 896, 1166, 1306, 1373
HpyF3I CTNAG 1 cut(s) 489
HpySE526I ACGT 3 cut(s) 355, 511, 1189
Hsp92II CATG 9 cut(s) 49, 633, 678, 743, 822, 1116, 1276, 1316, 1342
HspAI GCGC 1 cut(s) 888
Kzo9I GATC 5 cut(s) 58, 319, 606, 794, 1061
LmnI GCTCC 1 cut(s) 1373
Lsp1109I GCAGC 1 cut(s) 1392
LweI GCATC 6 cut(s) 39, 134, 560, 610, 736, 1281
MaeI CTAG 4 cut(s) 27, 722, 1031, 1377
MaeII ACGT 3 cut(s) 355, 511, 1189
MaeIII GTNAC 5 cut(s) 290, 395, 449, 892, 1133
MalI GATC 5 cut(s) 60, 321, 608, 796, 1063
MboI GATC 5 cut(s) 58, 319, 606, 794, 1061
MflI RGATCY 2 cut(s) 319, 1061
MluCI AATT 1 cut(s) 958
MlyI GAGTC 1 cut(s) 1054
MnlI CCTC 7 cut(s) 82, 88, 571, 693, 963, 1127, 1192
Mph1103I ATGCAT 1 cut(s) 54
MroXI GAANNNNTTC 1 cut(s) 440
MseI TTAA 4 cut(s) 411, 635, 690, 872
MslI CAYNNNNRTG 7 cut(s) 143, 356, 391, 618, 692, 744, 1271
MspA1I CMGCKG 1 cut(s) 1367
MspI CCGG 1 cut(s) 682
Mva1269I GAATGC 3 cut(s) 21, 52, 386
MwoI GCNNNNNNNGC 7 cut(s) 38, 267, 342, 896, 1166, 1306, 1373
NdeII GATC 5 cut(s) 58, 319, 606, 794, 1061
NheI GCTAGC 1 cut(s) 1376
NlaIII CATG 9 cut(s) 49, 633, 678, 743, 822, 1116, 1276, 1316, 1342
NlaIV GGNNCC 2 cut(s) 197, 680
NmuCI GTSAC 4 cut(s) 290, 449, 892, 1133
NsiI ATGCAT 1 cut(s) 54
NspI RCATGY 2 cut(s) 1116, 1316
PagI TCATGA 1 cut(s) 739
PciI ACATGT 1 cut(s) 1312
PctI GAATGC 3 cut(s) 21, 52, 386
PdmI GAANNNNTTC 1 cut(s) 440
PfeI GAWTC 6 cut(s) 64, 367, 466, 710, 725, 1259
PkrI GCNGC 3 cut(s) 310, 925, 1382
PleI GAGTC 1 cut(s) 1053
PpsI GAGTC 1 cut(s) 1053
Ppu21I YACGTR 1 cut(s) 356
PpuMI RGGWCCY 1 cut(s) 1142
PscI ACATGT 1 cut(s) 1312
Psp1406I AACGTT 1 cut(s) 511
Psp5II RGGWCCY 1 cut(s) 1142
PspEI GGTNACC 1 cut(s) 449
PspFI CCCAGC 1 cut(s) 733
PspN4I GGNNCC 2 cut(s) 197, 680
PspPI GGNCC 4 cut(s) 679, 684, 1006, 1142
PspPPI RGGWCCY 1 cut(s) 1142
PstNI CAGNNNCTG 1 cut(s) 1145
PsuI RGATCY 2 cut(s) 319, 1061
PvuII CAGCTG 1 cut(s) 1367
RsaI GTAC 3 cut(s) 104, 932, 1125
RsaNI GTAC 3 cut(s) 103, 931, 1124
RseI CAYNNNNRTG 7 cut(s) 143, 356, 391, 618, 692, 744, 1271
SaqAI TTAA 4 cut(s) 411, 635, 690, 872
SatI GCNGC 3 cut(s) 309, 924, 1381
Sau3AI GATC 5 cut(s) 58, 319, 606, 794, 1061
Sau96I GGNCC 4 cut(s) 679, 684, 1006, 1142
SchI GAGTC 1 cut(s) 1054
SfaNI GCATC 6 cut(s) 39, 134, 560, 610, 736, 1281
SfcI CTRYAG 1 cut(s) 234
SinI GGWCC 3 cut(s) 679, 684, 1142
SmiMI CAYNNNNRTG 7 cut(s) 143, 356, 391, 618, 692, 744, 1271
SmlI CTYRAG 1 cut(s) 1001
SmoI CTYRAG 1 cut(s) 1001
Sse9I AATT 1 cut(s) 958
SsiI CCGC 5 cut(s) 131, 308, 592, 923, 1059
SspI AATATT 1 cut(s) 1105
SspMI CTAG 4 cut(s) 27, 722, 1031, 1377
StyI CCWWGG 2 cut(s) 26, 191
TaaI ACNGT 7 cut(s) 107, 235, 401, 811, 981, 992, 1175
TaiI ACGT 3 cut(s) 358, 514, 1192
TaqI TCGA 3 cut(s) 469, 941, 1387
TasI AATT 1 cut(s) 958
TatI WGTACW 2 cut(s) 930, 1123
TauI GCSGC 2 cut(s) 311, 926
TfiI GAWTC 6 cut(s) 64, 367, 466, 710, 725, 1259
Tru1I TTAA 4 cut(s) 411, 635, 690, 872
Tru9I TTAA 4 cut(s) 411, 635, 690, 872
TscAI CASTG 5 cut(s) 127, 388, 406, 601, 933
TseFI GTSAC 4 cut(s) 290, 449, 892, 1133
TseI GCWGC 1 cut(s) 1380
Tsp45I GTSAC 4 cut(s) 290, 449, 892, 1133
TspDTI ATGAA 8 cut(s) 291, 618, 663, 1097, 1255, 1289, 1327, 1350
TspGWI ACGGA 4 cut(s) 23, 269, 474, 788
TspRI CASTG 5 cut(s) 127, 388, 406, 601, 933
VpaK11BI GGWCC 3 cut(s) 679, 684, 1142
XbaI TCTAGA 1 cut(s) 721
XceI RCATGY 2 cut(s) 1116, 1316
XmaJI CCTAGG 1 cut(s) 26
XmiI GTMKAC 2 cut(s) 109, 230
XmnI GAANNNNTTC 1 cut(s) 440
XspI CTAG 4 cut(s) 27, 722, 1031, 1377
Zsp2I ATGCAT 1 cut(s) 54
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.