Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0016067

Physical Location & Seq

Genomic Coordinates Reverse (-)

6672666 .. 6674682

Gene Structure 2017 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1038200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1581 bp

ATGTTCGCGGAGACAGAGTCTGTACATCGGGGTAAATTTGGAAACTACACGCATTCCGCCCCCAACATCTCCGCCACAGCCGGCATGGTGACCGACCTCAACGTAGAATACCCAGCGCGGAACAGCAGCGCATCTGCCCTCGGCCCGGCATGCTCTGTCGACTCGAGCCGAATGAGTGGCGAGTGCTCTCCGATGACAATGTCTCCCTGTGTGGAAATTTTCAGGTCGACGGGCCGAGGGCCCACTCTAACAACACCGATACTGTCCCCACTTAACCACCTGCACAATCCTCAGGTGTGGGGTTTTATCACAAAAGGCCTCGATGTTACACTATTCTCTTCTCCCTCTGTCCGATGTGGGACTGGGGTTCCAACACCCTGGAACAACACCTCCAGTTCCCCCTTCTCCAAGTCGCCCTGGCAACCGTTCGAGGAATCCAACGTCCCCCAGAACGGCCTAATTGGGTCTCTTCTCCGCGAGGAAGGCCATATTTACTCCCTCGCGGCCAAAGGAGACCTGCTGTACACCGGTTCGGACAGCAAGAACATCCGAGTTTGGAAGAATCTTAAAGAATTCAGCGGATTCAAATCGAACAGCGGACTTGTGAAAGCTATCGTCATCTCAGGCGACAAGCTCTTCACGGGTCACCAAGACGGAAAGATCCGGGTCTGGCGGGTATCCTCAAAAGACCCGAGCGTGCACAAACGCGCAGGGACTCTGCCCACGATGATGGATATCTTCAAATACTCTGTGAAACCCAGCAATTACGTTCAGGTGCGGCGGCAGAAGACGCTCTGGATCAAGCACTCCGACGCCATTTCGTGCCTGAGCCTCAGCGAGGACAAGAAGCTTCTCTACTCCGCATCATGGGACAGGACACTAAAAGTGTGGCGAATTGAAACCTCAAAATGCATCGAATCAATCCATGCCCACGACGACGCGGTGAACTCCGTTGTCGCGAGCGTGGAGGGGATGGTGTACACGGGAGCGGCGGACGGGACGGTTAAAGTTTGGAAGAGGGAGCAGAGCGGGAAGATCATCAAGCACACTCTGGCGCAAACACTGCTGAAGCAGGAGAGCGCGGTGACCGCGCTCGCCGCCAGCGCGTCGGGGTCGATTATCTACTGCGGGTCGTCAGACGGGTTGGTGAATTTCTGGGAACGGGAGAAGCAGCTGTCTCACGGCGGCGTGCTGAAGGGGCATAAGCTGGCGGTGCTCTGTTTGGCGACGGCGGGTAACTTGGTGTTCAGCGGGTCGGCGGACAAGACGATTTGCGTGTGGCGGAGGGAGGGCACGATCCACACGTGCCTGTCGGTTCTGGCTGGGCACACGGGGCCGGTGAAGTGCCTGTCGGTGGAGCAGGACAAGGATGTAAATGCGAGTAAAGCGAACGAGCAGCGGTGGATTGTGTACAGCGGGAGTCTGGATAAGTCGGTGAAGGTGTGGGGGGTGTCGGAGCAGGCGCCGGAGCTGGCAGCGATGGGTCACCAGCGCACGGGGTTCGATGCGGTTTCGATTCCGTCAGATGGGAGTTATTCGTCGTCGGCTGGTCGGGGCAGCAGCCACAATAGGAGGTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000166 GO:0000278 GO:0000281 GO:0000910 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005826 GO:0005856 GO:0005938 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007010 GO:0007049 GO:0008092 GO:0008144 GO:0008150 GO:0008152 GO:0009846 GO:0009856 GO:0009987 GO:0015629 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016905 GO:0017022 GO:0017076 GO:0018107 GO:0018193 GO:0018210 GO:0019538 GO:0022402 GO:0022411 GO:0022414 GO:0030029 GO:0030036 GO:0030554 GO:0030863 GO:0030864 GO:0031033 GO:0031035 GO:0031037 GO:0031038 GO:0032153 GO:0032155 GO:0032501 GO:0032553 GO:0032555 GO:0032559 GO:0032984 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0043624 GO:0043933 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0044706 GO:0045159 GO:0046777 GO:0051301 GO:0051704 GO:0061640 GO:0070938 GO:0071704 GO:0071840 GO:0071944 GO:0097159 GO:0097367 GO:0099568 GO:0140096 GO:1901265 GO:1901363 GO:1901564 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

527

Amino Acids

57.0

Weight (kDa)

9.2

Isoelectric Point (pI)

42.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_Nup120_160	PF11715	158 - 309	5.8e-07	Nucleoporin Nup120/160, beta-propeller domain
Beta-prop_SCAP	PF24017	159 - 392	9.9e-12	SCAP Beta-propeller
Beta-prop_WDR36-Utp21_1st	PF25171	161 - 427	9.8e-10	WDR36/Utp21 first beta-propeller
Beta-prop_WDR5	PF25175	168 - 348	4.5e-16	WDR5 beta-propeller domain
WDR55	PF24796	242 - 348	4.4e-11	WDR55
WD40_Gbeta	PF25391	259 - 427	3.5e-14	G protein beta WD-40 repeat protein
WD40_WDHD1_1st	PF24817	263 - 346	7.2e-09	WDHD1 first WD40 domain
Beta-prop_TEP1_2nd	PF25047	264 - 341	8.3e-08	TEP-1 second beta-propeller
Beta-prop_THOC3	PF25174	266 - 464	4e-23	THOC3 beta-propeller domain
WD40	PF00400	267 - 297	7.7e-07	WD domain, G-beta repeat
Beta-prop_WDR3_1st	PF25173	268 - 339	3.7e-12	WDR3 first beta-propeller domain
Beta-prop_EML	PF23409	268 - 456	4e-12	Echinoderm microtubule-associated protein first beta-propeller
WD40_CDC20-Fz	PF24807	268 - 408	7.3e-13	CDC20/Fizzy WD40 domain
EIF3I	PF24805	269 - 389	2e-06	EIF3I
Beta-prop_WDR3_2nd	PF25172	271 - 389	6.3e-15	WDR3 second beta-propeller domain
WD40_Prp19	PF24814	271 - 390	5e-15	Prp19 WD40 domain
Beta-prop_EML_2	PF23414	275 - 427	1.4e-12	Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR90_POC16_2nd	PF23393	280 - 390	4.5e-07	WDR90/POC16, second beta-propeller
Beta-prop_WDR5	PF25175	349 - 461	3.6e-14	WDR5 beta-propeller domain
Beta-prop_WDR3_1st	PF25173	349 - 498	6.7e-19	WDR3 first beta-propeller domain
WD40_WDHD1_1st	PF24817	350 - 430	3.8e-06	WDHD1 first WD40 domain
WDR55	PF24796	356 - 466	7.2e-06	WDR55
WD40_CDC20-Fz	PF24807	357 - 496	1.2e-10	CDC20/Fizzy WD40 domain
Beta-prop_TEP1_2nd	PF25047	370 - 491	1.4e-10	TEP-1 second beta-propeller
WD40_Prp19	PF24814	397 - 468	1.9e-06	Prp19 WD40 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0016067)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26490
fragaria_vesca	FvH4_2g40541
malus_domestica	MD00G1038200.v1.1 MD08G1039100.v1.1
prunus_persica	Prupe.1G386600_v2.0.a1
pyrus_communis	pycom08g03080
rosa_chinensis	RchiOBHm_Chr6g0300181
rosa_laevigata	RLG00000011360
rosa_multiflora	Rmu_sc0001670.1_g000038
rosa_roxburghii	Rroxscaffold_7G00168030
rosa_samantha	Rh6AG406000 Rh6BG414000 Rh6CG421200 Rh6DG406800
rosa_wichuraiana	Rw6G035540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	288
Acc36I	ACCTGC	2 cut(s)	288, 525
AccB1I	GGYRCC	1 cut(s)	1462
AccBSI	CCGCTC	2 cut(s)	989, 1029
AccI	GTMKAC	2 cut(s)	159, 227
AclWI	GGATC	3 cut(s)	655, 806, 1291
AcoI	YGGCCR	1 cut(s)	504
AcsI	RAATTY	4 cut(s)	35, 216, 572, 1150
AcuI	CTGAAG	2 cut(s)	1088, 1214
AcvI	CACGTG	1 cut(s)	1305
AcyI	GRCGYC	2 cut(s)	813, 1463
AfaI	GTAC	4 cut(s)	24, 524, 980, 1412
AfiI	CCNNNNNNNGG	7 cut(s)	145, 452, 838, 867, 1354, 1495, 1526
AflIII	ACRYGT	1 cut(s)	1302
AgeI	ACCGGT	1 cut(s)	527
AgsI	TTSAA	3 cut(s)	586, 742, 899
AjnI	CCWGG	2 cut(s)	377, 416
AloI	GAACNNNNNNTCC	2 cut(s)	374, 406
AluBI	AGCT	6 cut(s)	611, 634, 850, 1174, 1207, 1471
AluI	AGCT	6 cut(s)	611, 634, 850, 1174, 1207, 1471
Alw21I	GWGCWC	3 cut(s)	188, 702, 1218
Alw26I	GTCTC	5 cut(s)	5, 207, 471, 507, 1182
Alw44I	GTGCAC	1 cut(s)	698
AlwI	GGATC	3 cut(s)	655, 806, 1291
AlwNI	CAGNNNCTG	1 cut(s)	20
Ama87I	CYCGRG	2 cut(s)	163, 691
AoxI	GGCC	8 cut(s)	142, 232, 239, 316, 454, 484, 504, 1334
ApaI	GGGCCC	1 cut(s)	243
ApaLI	GTGCAC	1 cut(s)	698
ApeKI	GCWGC	6 cut(s)	126, 1171, 1396, 1475, 1557, 1560
ApoI	RAATTY	4 cut(s)	35, 216, 572, 1150
AsiGI	ACCGGT	1 cut(s)	527
AspLEI	GCGC	9 cut(s)	118, 131, 710, 1057, 1082, 1093, 1106, 1465, 1494
AspS9I	GGNCC	5 cut(s)	143, 232, 239, 240, 1334
AsuC2I	CCSGG	2 cut(s)	146, 665
AsuHPI	GGTGA	8 cut(s)	100, 638, 955, 1096, 1159, 1351, 1447, 1478
AvaI	CYCGRG	2 cut(s)	163, 691
AxyI	CCTNAGG	1 cut(s)	291
BaeGI	GKGCMC	4 cut(s)	243, 702, 1295, 1329
BanI	GGYRCC	1 cut(s)	1462
BanII	GRGCYC	1 cut(s)	243
BarI	GAAGNNNNNNTAC	2 cut(s)	839, 871
BbrPI	CACGTG	1 cut(s)	1305
BbsI	GAAGAC	1 cut(s)	794
Bbv12I	GWGCWC	3 cut(s)	188, 702, 1218
BbvCI	CCTCAGC	1 cut(s)	833
BbvI	GCAGC	6 cut(s)	138, 1183, 1408, 1487, 1569, 1572
BccI	CCATC	4 cut(s)	724, 967, 1474, 1520
BceAI	ACGGC	3 cut(s)	469, 1198, 1245
BcgI	CGANNNNNNTGC	2 cut(s)	1483, 1517
BciT130I	CCWGG	2 cut(s)	379, 418
BciVI	GTATCC	1 cut(s)	688
BcnI	CCSGG	2 cut(s)	146, 665
BcoDI	GTCTC	5 cut(s)	5, 207, 471, 507, 1182
BfoI	RGCGCY	1 cut(s)	1466
BfuAI	ACCTGC	2 cut(s)	288, 525
BfuI	GTATCC	1 cut(s)	688
Bme1390I	CCNGG	4 cut(s)	146, 379, 418, 665
BmeT110I	CYCGRG	2 cut(s)	163, 691
BmgT120I	GGNCC	5 cut(s)	143, 232, 239, 240, 1334
BmiI	GGNNCC	4 cut(s)	241, 369, 1335, 1464
BmrFI	CCNGG	4 cut(s)	146, 379, 418, 665
BmrI	ACTGGG	1 cut(s)	372
BmsI	GCATC	4 cut(s)	140, 872, 921, 1495
BmuI	ACTGGG	1 cut(s)	372
BpiI	GAAGAC	1 cut(s)	794
BpmI	CTGGAG	1 cut(s)	376
Bpu10I	CCTNAGC	2 cut(s)	827, 833
BpuMI	CCSGG	2 cut(s)	146, 665
BsaAI	YACGTR	1 cut(s)	1305
BsaBI	GATNNNNATC	2 cut(s)	586, 734
BsaHI	GRCGYC	2 cut(s)	813, 1463
BsaI	GGTCTC	2 cut(s)	471, 507
BsaJI	CCNNGG	4 cut(s)	139, 235, 377, 416
BsaWI	WCCGGW	1 cut(s)	527
BsaXI	ACNNNNNCTCC	5 cut(s)	32, 187, 217, 374, 404
Bsc4I	CCNNNNNNNGG	7 cut(s)	145, 452, 838, 867, 1354, 1495, 1526
Bse118I	RCCGGY	3 cut(s)	80, 527, 1336
Bse1I	ACTGG	2 cut(s)	367, 393
Bse21I	CCTNAGG	1 cut(s)	291
Bse8I	GATNNNNATC	2 cut(s)	586, 734
BseBI	CCWGG	2 cut(s)	379, 418
BseDI	CCNNGG	4 cut(s)	139, 235, 377, 416
BseGI	GGATG	3 cut(s)	546, 978, 1375
BseJI	GATNNNNATC	2 cut(s)	586, 734
BseLI	CCNNNNNNNGG	7 cut(s)	145, 452, 838, 867, 1354, 1495, 1526
BseMII	CTCAG	4 cut(s)	305, 636, 818, 847
BseNI	ACTGG	2 cut(s)	367, 393
BseSI	GKGCMC	4 cut(s)	243, 702, 1295, 1329
BseXI	GCAGC	6 cut(s)	138, 1183, 1408, 1487, 1569, 1572
BseYI	CCCAGC	3 cut(s)	112, 758, 1322
BsgI	GTGCAG	1 cut(s)	266
BshFI	GGCC	8 cut(s)	144, 234, 241, 318, 456, 486, 506, 1336
BshNI	GGYRCC	1 cut(s)	1462
BshTI	ACCGGT	1 cut(s)	527
BsiHKAI	GWGCWC	3 cut(s)	188, 702, 1218
BsiHKCI	CYCGRG	2 cut(s)	163, 691
BsiSI	CCGG	6 cut(s)	81, 146, 528, 664, 1337, 1466
BslFI	GGGAC	6 cut(s)	250, 373, 428, 727, 884, 1012
BslI	CCNNNNNNNGG	7 cut(s)	145, 452, 838, 867, 1354, 1495, 1526
BsmAI	GTCTC	5 cut(s)	5, 207, 471, 507, 1182
BsmFI	GGGAC	6 cut(s)	250, 373, 428, 727, 884, 1012
BsmI	GAATGC	1 cut(s)	52
BsnI	GGCC	8 cut(s)	144, 234, 241, 318, 456, 486, 506, 1336
Bso31I	GGTCTC	2 cut(s)	471, 507
BsoBI	CYCGRG	2 cut(s)	163, 691
Bsp120I	GGGCCC	1 cut(s)	239
Bsp1286I	GDGCHC	6 cut(s)	188, 243, 702, 1218, 1295, 1329
Bsp1407I	TGTACA	4 cut(s)	22, 522, 978, 1410
Bsp143I	GATC	4 cut(s)	660, 798, 1035, 1296
Bsp68I	TCGCGA	1 cut(s)	959
BspANI	GGCC	8 cut(s)	144, 234, 241, 318, 456, 486, 506, 1336
BspCNI	CTCAG	4 cut(s)	304, 635, 819, 846
BspLI	GGNNCC	4 cut(s)	241, 369, 1335, 1464
BspMI	ACCTGC	2 cut(s)	288, 525
BspPI	GGATC	3 cut(s)	655, 806, 1291
BspQI	GCTCTTC	1 cut(s)	641
BspT107I	GGYRCC	1 cut(s)	1462
BspTNI	GGTCTC	2 cut(s)	471, 507
BsrBI	CCGCTC	2 cut(s)	989, 1029
BsrFI	RCCGGY	3 cut(s)	80, 527, 1336
BsrGI	TGTACA	4 cut(s)	22, 522, 978, 1410
BsrI	ACTGG	2 cut(s)	367, 393
BssAI	RCCGGY	3 cut(s)	80, 527, 1336
BssECI	CCNNGG	4 cut(s)	139, 235, 377, 416
BssMI	GATC	4 cut(s)	660, 798, 1035, 1296
BssNI	GRCGYC	2 cut(s)	813, 1463
Bst2UI	CCWGG	2 cut(s)	379, 418
Bst4CI	ACNGT	3 cut(s)	264, 426, 1003
Bst6I	CTCTTC	4 cut(s)	343, 474, 641, 1010
BstACI	GRCGYC	2 cut(s)	813, 1463
BstAPI	GCANNNNNTGC	1 cut(s)	1063
BstAUI	TGTACA	4 cut(s)	22, 522, 978, 1410
BstBAI	YACGTR	1 cut(s)	1305
BstDEI	CTNAG	4 cut(s)	291, 622, 827, 833
BstEII	GGTNACC	4 cut(s)	88, 644, 1084, 1484
BstENI	CCTNNNNNAGG	1 cut(s)	836
BstF5I	GGATG	3 cut(s)	546, 978, 1375
BstH2I	RGCGCY	1 cut(s)	1466
BstHHI	GCGC	9 cut(s)	118, 131, 710, 1057, 1082, 1093, 1106, 1465, 1494
BstKTI	GATC	4 cut(s)	663, 801, 1038, 1299
BstMAI	GTCTC	5 cut(s)	5, 207, 471, 507, 1182
BstMBI	GATC	4 cut(s)	660, 798, 1035, 1296
BstNI	CCWGG	2 cut(s)	379, 418
BstNSI	RCATGY	1 cut(s)	153
BstPI	GGTNACC	4 cut(s)	88, 644, 1084, 1484
BstSCI	CCNGG	4 cut(s)	144, 377, 416, 663
BstSLI	GKGCMC	4 cut(s)	243, 702, 1295, 1329
BstV1I	GCAGC	6 cut(s)	138, 1183, 1408, 1487, 1569, 1572
BstV2I	GAAGAC	1 cut(s)	794
BstX2I	RGATCY	1 cut(s)	660
BstXI	CCANNNNNNTGG	2 cut(s)	378, 730
BstYI	RGATCY	1 cut(s)	660
Bsu36I	CCTNAGG	1 cut(s)	291
BsuI	GTATCC	1 cut(s)	688
BsuRI	GGCC	8 cut(s)	144, 234, 241, 318, 456, 486, 506, 1336
BtgZI	GCGATG	1 cut(s)	1493
BtsCI	GGATG	3 cut(s)	546, 978, 1375
BtsI	GCAGTG	1 cut(s)	1061
BtsIMutI	CAGTG	1 cut(s)	1061
BtuMI	TCGCGA	1 cut(s)	959
BveI	ACCTGC	2 cut(s)	288, 525
CaiI	CAGNNNCTG	1 cut(s)	20
CfoI	GCGC	9 cut(s)	118, 131, 710, 1057, 1082, 1093, 1106, 1465, 1494
Cfr10I	RCCGGY	3 cut(s)	80, 527, 1336
Cfr13I	GGNCC	5 cut(s)	143, 232, 239, 240, 1334
CseI	GACGC	4 cut(s)	799, 821, 947, 1095
Csp6I	GTAC	4 cut(s)	23, 523, 979, 1411
CspAI	ACCGGT	1 cut(s)	527
CviAII	CATG	4 cut(s)	85, 150, 867, 926
CviQI	GTAC	4 cut(s)	23, 523, 979, 1411
DdeI	CTNAG	4 cut(s)	291, 622, 827, 833
DinI	GGCGCC	1 cut(s)	1464
DpnI	GATC	4 cut(s)	662, 800, 1037, 1298
DpnII	GATC	4 cut(s)	660, 798, 1035, 1296
EaeI	YGGCCR	1 cut(s)	504
Eam1104I	CTCTTC	4 cut(s)	343, 474, 641, 1010
EarI	CTCTTC	4 cut(s)	343, 474, 641, 1010
EciI	GGCGGA	5 cut(s)	46, 61, 1007, 1274, 1297
Eco147I	AGGCCT	1 cut(s)	318
Eco24I	GRGCYC	1 cut(s)	243
Eco31I	GGTCTC	2 cut(s)	471, 507
Eco32I	GATATC	1 cut(s)	736
Eco57I	CTGAAG	2 cut(s)	1088, 1214
Eco72I	CACGTG	1 cut(s)	1305
Eco81I	CCTNAGG	1 cut(s)	291
Eco88I	CYCGRG	2 cut(s)	163, 691
Eco91I	GGTNACC	4 cut(s)	88, 644, 1084, 1484
EcoNI	CCTNNNNNAGG	1 cut(s)	836
EcoO109I	RGGNCCY	1 cut(s)	239
EcoO65I	GGTNACC	4 cut(s)	88, 644, 1084, 1484
EcoRI	GAATTC	1 cut(s)	572
EcoRII	CCWGG	2 cut(s)	377, 416
EcoRV	GATATC	1 cut(s)	736
EcoT22I	ATGCAT	1 cut(s)	914
EcoT38I	GRGCYC	1 cut(s)	243
EgeI	GGCGCC	1 cut(s)	1464
EheI	GGCGCC	1 cut(s)	1464
FaeI	CATG	4 cut(s)	88, 153, 870, 929
FaiI	YATR	6 cut(s)	86, 151, 489, 868, 927, 1203
FaqI	GGGAC	6 cut(s)	250, 373, 428, 727, 884, 1012
FatI	CATG	4 cut(s)	84, 149, 866, 925
FauI	CCCGC	6 cut(s)	666, 1022, 1121, 1225, 1244, 1409
FblI	GTMKAC	2 cut(s)	159, 227
FokI	GGATG	3 cut(s)	533, 985, 1382
FriOI	GRGCYC	1 cut(s)	243
GlaI	GCGC	9 cut(s)	117, 130, 709, 1056, 1081, 1092, 1105, 1464, 1493
GsaI	CCCAGC	3 cut(s)	116, 762, 1326
GsuI	CTGGAG	1 cut(s)	376
HaeII	RGCGCY	1 cut(s)	1466
HaeIII	GGCC	8 cut(s)	144, 234, 241, 318, 456, 486, 506, 1336
HapII	CCGG	6 cut(s)	81, 146, 528, 664, 1337, 1466
HgaI	GACGC	4 cut(s)	799, 821, 947, 1095
HhaI	GCGC	9 cut(s)	118, 131, 710, 1057, 1082, 1093, 1106, 1465, 1494
Hin1I	GRCGYC	2 cut(s)	813, 1463
Hin1II	CATG	4 cut(s)	88, 153, 870, 929
Hin6I	GCGC	9 cut(s)	116, 129, 708, 1055, 1080, 1091, 1104, 1463, 1492
HinP1I	GCGC	9 cut(s)	116, 129, 708, 1055, 1080, 1091, 1104, 1463, 1492
HincII	GTYRAC	2 cut(s)	160, 228
HindII	GTYRAC	2 cut(s)	160, 228
HindIII	AAGCTT	1 cut(s)	848
HinfI	GANTC	9 cut(s)	17, 161, 434, 562, 582, 715, 917, 1420, 1516
HpaII	CCGG	6 cut(s)	81, 146, 528, 664, 1337, 1466
HphI	GGTGA	8 cut(s)	100, 638, 955, 1096, 1159, 1351, 1447, 1478
Hpy166II	GTNNAC	8 cut(s)	160, 228, 525, 700, 946, 979, 981, 1411
Hpy188I	TCNGA	9 cut(s)	192, 353, 535, 551, 811, 1138, 1456, 1525, 1580
Hpy188III	TCNNGA	3 cut(s)	796, 958, 1424
Hpy8I	GTNNAC	8 cut(s)	160, 228, 525, 700, 946, 979, 981, 1411
Hpy99I	CGWCG	8 cut(s)	232, 815, 938, 941, 1111, 1231, 1543, 1546
HpyAV	CCTTC	4 cut(s)	412, 476, 1189, 1432
HpyCH4III	ACNGT	3 cut(s)	264, 426, 1003
HpyCH4IV	ACGT	4 cut(s)	102, 441, 768, 1304
HpyCH4V	TGCA	3 cut(s)	283, 700, 912
HpyF3I	CTNAG	4 cut(s)	291, 622, 827, 833
HpySE526I	ACGT	4 cut(s)	102, 441, 768, 1304
Hsp92I	GRCGYC	2 cut(s)	813, 1463
Hsp92II	CATG	4 cut(s)	88, 153, 870, 929
HspAI	GCGC	9 cut(s)	116, 129, 708, 1055, 1080, 1091, 1104, 1463, 1492
KasI	GGCGCC	1 cut(s)	1462
KroI	GCCGGC	1 cut(s)	80
KroNI	GCCGGC	1 cut(s)	82
Kzo9I	GATC	4 cut(s)	660, 798, 1035, 1296
LguI	GCTCTTC	1 cut(s)	641
LmnI	GCTCC	5 cut(s)	986, 1021, 1357, 1456, 1468
Lsp1109I	GCAGC	6 cut(s)	138, 1183, 1408, 1487, 1569, 1572
LweI	GCATC	4 cut(s)	140, 872, 921, 1495
MaeII	ACGT	4 cut(s)	102, 441, 768, 1304
MaeIII	GTNAC	6 cut(s)	88, 325, 644, 1084, 1235, 1484
MalI	GATC	4 cut(s)	662, 800, 1037, 1298
MbiI	CCGCTC	2 cut(s)	989, 1029
MboI	GATC	4 cut(s)	660, 798, 1035, 1296
MboII	GAAGA	8 cut(s)	330, 461, 571, 628, 730, 799, 1027, 1045
MflI	RGATCY	1 cut(s)	660
MhlI	GDGCHC	6 cut(s)	188, 243, 702, 1218, 1295, 1329
MluCI	AATT	7 cut(s)	35, 216, 459, 572, 763, 894, 1150
Mly113I	GGCGCC	1 cut(s)	1463
MlyI	GAGTC	4 cut(s)	26, 155, 709, 1429
MmeI	TCCRAC	4 cut(s)	395, 462, 834, 1434
Mph1103I	ATGCAT	1 cut(s)	914
MroNI	GCCGGC	1 cut(s)	80
MseI	TTAA	3 cut(s)	273, 567, 1005
MslI	CAYNNNNRTG	1 cut(s)	728
MspA1I	CMGCKG	6 cut(s)	579, 597, 1174, 1251, 1399, 1416
MspI	CCGG	6 cut(s)	81, 146, 528, 664, 1337, 1466
MspR9I	CCNGG	4 cut(s)	146, 379, 418, 665
Mva1269I	GAATGC	1 cut(s)	52
MvaI	CCWGG	2 cut(s)	379, 418
NaeI	GCCGGC	1 cut(s)	82
NarI	GGCGCC	1 cut(s)	1463
NciI	CCSGG	2 cut(s)	146, 665
NdeII	GATC	4 cut(s)	660, 798, 1035, 1296
NgoMIV	GCCGGC	1 cut(s)	80
NlaIII	CATG	4 cut(s)	88, 153, 870, 929
NlaIV	GGNNCC	4 cut(s)	241, 369, 1335, 1464
NmeAIII	GCCGAG	2 cut(s)	120, 260
NmuCI	GTSAC	4 cut(s)	88, 644, 1084, 1484
NruI	TCGCGA	1 cut(s)	959
NsiI	ATGCAT	1 cut(s)	914
NspI	RCATGY	1 cut(s)	153
PaeI	GCATGC	1 cut(s)	153
PaeR7I	CTCGAG	1 cut(s)	163
PaqCI	CACCTGC	1 cut(s)	288
PceI	AGGCCT	1 cut(s)	318
PciSI	GCTCTTC	1 cut(s)	641
PcsI	WCGNNNNNNNCGW	1 cut(s)	1301
PctI	GAATGC	1 cut(s)	52
PdiI	GCCGGC	1 cut(s)	82
PfeI	GAWTC	5 cut(s)	434, 562, 582, 917, 1516
PflFI	GACNNNGTC	2 cut(s)	16, 199
PinAI	ACCGGT	1 cut(s)	527
PleI	GAGTC	4 cut(s)	25, 155, 709, 1428
PluTI	GGCGCC	1 cut(s)	1466
PmaCI	CACGTG	1 cut(s)	1305
PmlI	CACGTG	1 cut(s)	1305
PpsI	GAGTC	4 cut(s)	25, 155, 709, 1428
Ppu21I	YACGTR	1 cut(s)	1305
Psp6I	CCWGG	2 cut(s)	377, 416
PspCI	CACGTG	1 cut(s)	1305
PspEI	GGTNACC	4 cut(s)	88, 644, 1084, 1484
PspFI	CCCAGC	3 cut(s)	112, 758, 1322
PspGI	CCWGG	2 cut(s)	377, 416
PspN4I	GGNNCC	4 cut(s)	241, 369, 1335, 1464
PspOMI	GGGCCC	1 cut(s)	239
PspPI	GGNCC	5 cut(s)	143, 232, 239, 240, 1334
PspXI	VCTCGAGB	1 cut(s)	163
PstNI	CAGNNNCTG	1 cut(s)	20
PsuI	RGATCY	1 cut(s)	660
PsyI	GACNNNGTC	2 cut(s)	16, 199
PvuII	CAGCTG	1 cut(s)	1174
RruI	TCGCGA	1 cut(s)	959
RsaI	GTAC	4 cut(s)	24, 524, 980, 1412
RsaNI	GTAC	4 cut(s)	23, 523, 979, 1411
RseI	CAYNNNNRTG	1 cut(s)	728
SalI	GTCGAC	2 cut(s)	158, 226
SapI	GCTCTTC	1 cut(s)	641
SaqAI	TTAA	3 cut(s)	273, 567, 1005
Sau3AI	GATC	4 cut(s)	660, 798, 1035, 1296
Sau96I	GGNCC	5 cut(s)	143, 232, 239, 240, 1334
SchI	GAGTC	4 cut(s)	26, 155, 709, 1429
ScrFI	CCNGG	4 cut(s)	146, 379, 418, 665
SduI	GDGCHC	6 cut(s)	188, 243, 702, 1218, 1295, 1329
SfaNI	GCATC	4 cut(s)	140, 872, 921, 1495
SfoI	GGCGCC	1 cut(s)	1464
Sfr274I	CTCGAG	1 cut(s)	163
SlaI	CTCGAG	1 cut(s)	163
SmiMI	CAYNNNNRTG	1 cut(s)	728
SmlI	CTYRAG	1 cut(s)	163
SmoI	CTYRAG	1 cut(s)	163
SphI	GCATGC	1 cut(s)	153
Sse9I	AATT	7 cut(s)	35, 216, 459, 572, 763, 894, 1150
SseBI	AGGCCT	1 cut(s)	318
SspDI	GGCGCC	1 cut(s)	1462
StuI	AGGCCT	1 cut(s)	318
StyD4I	CCNGG	4 cut(s)	144, 377, 416, 663
TaaI	ACNGT	3 cut(s)	264, 426, 1003
TaiI	ACGT	4 cut(s)	105, 444, 771, 1307
TaqII	GACCGA	1 cut(s)	107
TasI	AATT	7 cut(s)	35, 216, 459, 572, 763, 894, 1150
TatI	WGTACW	4 cut(s)	22, 522, 978, 1410
TauI	GCSGC	6 cut(s)	506, 781, 784, 992, 1100, 1188
TfiI	GAWTC	5 cut(s)	434, 562, 582, 917, 1516
Tru1I	TTAA	3 cut(s)	273, 567, 1005
Tru9I	TTAA	3 cut(s)	273, 567, 1005
TscAI	CASTG	1 cut(s)	1068
TseFI	GTSAC	4 cut(s)	88, 644, 1084, 1484
TseI	GCWGC	6 cut(s)	126, 1171, 1396, 1475, 1557, 1560
Tsp45I	GTSAC	4 cut(s)	88, 644, 1084, 1484
TspGWI	ACGGA	3 cut(s)	669, 940, 1509
TspRI	CASTG	1 cut(s)	1068
Tth111I	GACNNNGTC	2 cut(s)	16, 199
VneI	GTGCAC	1 cut(s)	698
XagI	CCTNNNNNAGG	1 cut(s)	836
XapI	RAATTY	4 cut(s)	35, 216, 572, 1150
XceI	RCATGY	1 cut(s)	153
XcmI	CCANNNNNNNNNTGG	1 cut(s)	82
XhoI	CTCGAG	1 cut(s)	163
XmiI	GTMKAC	2 cut(s)	159, 227
Zsp2I	ATGCAT	1 cut(s)	914

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.