Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0016067

Physical Location & Seq

Genomic Coordinates Forward (+)

2446803 .. 2447644

Gene Structure 842 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g03080.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGATGGATATCTTTAAATACTCCGTGAAACCCAGTAATTACGTTAAGGTTCGGCGGCAGAAGACGCTCTGGATCAAGCACTCCGACGCAGTTTCGTGCATGAGCCTCAGTGAGGACAAGAAGCTTCTTTACTCTGCCTCCTGGGACAGGACGTTAAAAGTGTGGCGAATTGAAACCTCGAAATGCATCGAATCGATCCACGCGCACGACGACGCAGTGAACTCCGTCGTCGCGAGCGTGGAGGGGATGGTGTACACGGGGGCGGCGGACGGGACGGTTAAAGTTTGGAAGAAGGAGCAGAGCGCGAAGATCACCAAGCACACTCTGGCGCAGACTCTGCTGAAGCAGGAGAGCGCGGTGACCGCGCTCGCCGCCAGCGCGTCGGGGTCAATTGTTTACTGCGGATCGTCAGACGGGTTGGTGAATTTCTGGGAGCGGGAGAAGCAGCTGTCGCACGGCGGCGTGCTGAAGGGGCACAAGCTGGCGGTGCTATGTTTGGCGGCGGCGGGGAACTTGGTATTCAGCGGGTCGGCGGACAAGACGATTTGCGTGTGGCGGAGGGAGGGAACGATCCACACGTGCCTGTCGGTTCTGTCCGGGCACACGGGGCCGGTGAAGTGCCTGGCGGTGGAAAAGGACAAGGATGTAAATGCGAGTAAAGCGGACGAGCAGCGTTGGATTGTGTATAGCGGGAGTCTGGATAAGTCGGTGAAGGTGTGGGGGGTGTCGGAGCAGGCGCCGGAGCTGACGGCGATGAGTCACCAGCGCGGGGGGTTCGATCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000166 GO:0000278 GO:0000281 GO:0000910 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005826 GO:0005856 GO:0005938 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007010 GO:0007049 GO:0008092 GO:0008144 GO:0008150 GO:0008152 GO:0009846 GO:0009856 GO:0009987 GO:0015629 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016905 GO:0017022 GO:0017076 GO:0018107 GO:0018193 GO:0018210 GO:0019538 GO:0022402 GO:0022411 GO:0022414 GO:0030029 GO:0030036 GO:0030554 GO:0030863 GO:0030864 GO:0031033 GO:0031035 GO:0031037 GO:0031038 GO:0032153 GO:0032155 GO:0032501 GO:0032553 GO:0032555 GO:0032559 GO:0032984 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0043624 GO:0043933 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0044706 GO:0045159 GO:0046777 GO:0051301 GO:0051704 GO:0061640 GO:0070938 GO:0071704 GO:0071840 GO:0071944 GO:0097159 GO:0097367 GO:0099568 GO:0140096 GO:1901265 GO:1901363 GO:1901564 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

262

Amino Acids

28.52

Weight (kDa)

8.97

Isoelectric Point (pI)

31.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016067)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26490
fragaria_vesca	FvH4_2g40541
malus_domestica	MD00G1038200.v1.1 MD08G1039100.v1.1
prunus_persica	Prupe.1G386600_v2.0.a1
pyrus_communis	pycom08g03080
rosa_chinensis	RchiOBHm_Chr6g0300181
rosa_laevigata	RLG00000011360
rosa_multiflora	Rmu_sc0001670.1_g000038
rosa_roxburghii	Rroxscaffold_7G00168030
rosa_samantha	Rh6AG406000 Rh6BG414000 Rh6CG421200 Rh6DG406800
rosa_wichuraiana	Rw6G035540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	736
AccBSI	CCGCTC	1 cut(s)	436
AccII	CGCG	7 cut(s)	203, 233, 305, 356, 365, 380, 768
AclWI	GGATC	5 cut(s)	80, 190, 412, 565, 773
AcsI	RAATTY	1 cut(s)	424
AcuI	CTGAAG	2 cut(s)	362, 488
AcvI	CACGTG	1 cut(s)	579
AcyI	GRCGYC	1 cut(s)	737
AfaI	GTAC	1 cut(s)	254
AfiI	CCNNNNNNNGG	4 cut(s)	112, 147, 628, 769
AflIII	ACRYGT	1 cut(s)	576
AgsI	TTSAA	1 cut(s)	173
AjnI	CCWGG	2 cut(s)	140, 621
AluBI	AGCT	4 cut(s)	124, 448, 481, 745
AluI	AGCT	4 cut(s)	124, 448, 481, 745
AlwI	GGATC	5 cut(s)	80, 190, 412, 565, 773
AlwNI	CAGNNNCTG	1 cut(s)	337
AoxI	GGCC	1 cut(s)	608
ApeKI	GCWGC	2 cut(s)	445, 670
ApoI	RAATTY	1 cut(s)	424
AspLEI	GCGC	8 cut(s)	205, 305, 331, 356, 367, 380, 739, 768
AspS9I	GGNCC	1 cut(s)	608
AsuC2I	CCSGG	1 cut(s)	598
AsuHPI	GGTGA	6 cut(s)	304, 370, 433, 625, 721, 752
BaeGI	GKGCMC	2 cut(s)	477, 603
BanI	GGYRCC	1 cut(s)	736
BarI	GAAGNNNNNNTAC	2 cut(s)	113, 145
BbrPI	CACGTG	1 cut(s)	579
BbsI	GAAGAC	1 cut(s)	68
BbvI	GCAGC	2 cut(s)	457, 682
BccI	CCATC	1 cut(s)	241
BceAI	ACGGC	2 cut(s)	472, 765
BciT130I	CCWGG	2 cut(s)	142, 623
BcnI	CCSGG	1 cut(s)	598
BfoI	RGCGCY	1 cut(s)	740
BisI	GCNGC	8 cut(s)	56, 264, 372, 446, 460, 501, 504, 671
BlsI	GCNGC	8 cut(s)	57, 265, 373, 447, 461, 502, 505, 672
Bme1390I	CCNGG	3 cut(s)	142, 598, 623
BmgT120I	GGNCC	1 cut(s)	608
BmiI	GGNNCC	2 cut(s)	609, 738
BmrFI	CCNGG	3 cut(s)	142, 598, 623
BmrI	ACTGGG	1 cut(s)	27
BmsI	GCATC	1 cut(s)	195
BmuI	ACTGGG	1 cut(s)	27
BpiI	GAAGAC	1 cut(s)	68
BpuMI	CCSGG	1 cut(s)	598
Bsa29I	ATCGAT	1 cut(s)	194
BsaAI	YACGTR	1 cut(s)	579
BsaBI	GATNNNNATC	1 cut(s)	8
BsaHI	GRCGYC	1 cut(s)	737
BsaJI	CCNNGG	1 cut(s)	141
BsaXI	ACNNNNNCTCC	2 cut(s)	122, 152
Bsc4I	CCNNNNNNNGG	4 cut(s)	112, 147, 628, 769
Bse118I	RCCGGY	1 cut(s)	610
Bse1I	ACTGG	1 cut(s)	33
Bse8I	GATNNNNATC	1 cut(s)	8
BseBI	CCWGG	2 cut(s)	142, 623
BseCI	ATCGAT	1 cut(s)	194
BseDI	CCNNGG	1 cut(s)	141
BseGI	GGATG	2 cut(s)	252, 649
BseJI	GATNNNNATC	1 cut(s)	8
BseLI	CCNNNNNNNGG	4 cut(s)	112, 147, 628, 769
BseMII	CTCAG	1 cut(s)	121
BseNI	ACTGG	1 cut(s)	33
BseSI	GKGCMC	2 cut(s)	477, 603
BseXI	GCAGC	2 cut(s)	457, 682
Bsh1236I	CGCG	7 cut(s)	203, 233, 305, 356, 365, 380, 768
BshFI	GGCC	1 cut(s)	610
BshNI	GGYRCC	1 cut(s)	736
BshVI	ATCGAT	1 cut(s)	194
BsiSI	CCGG	3 cut(s)	597, 611, 740
BslFI	GGGAC	2 cut(s)	158, 286
BslI	CCNNNNNNNGG	4 cut(s)	112, 147, 628, 769
BsmFI	GGGAC	2 cut(s)	158, 286
BsnI	GGCC	1 cut(s)	610
Bsp1286I	GDGCHC	2 cut(s)	477, 603
Bsp1407I	TGTACA	1 cut(s)	252
Bsp143I	GATC	6 cut(s)	72, 195, 309, 404, 570, 778
Bsp68I	TCGCGA	1 cut(s)	233
BspANI	GGCC	1 cut(s)	610
BspCNI	CTCAG	1 cut(s)	120
BspDI	ATCGAT	1 cut(s)	194
BspFNI	CGCG	7 cut(s)	203, 233, 305, 356, 365, 380, 768
BspLI	GGNNCC	2 cut(s)	609, 738
BspPI	GGATC	5 cut(s)	80, 190, 412, 565, 773
BspT107I	GGYRCC	1 cut(s)	736
BsrBI	CCGCTC	1 cut(s)	436
BsrFI	RCCGGY	1 cut(s)	610
BsrGI	TGTACA	1 cut(s)	252
BsrI	ACTGG	1 cut(s)	33
BssAI	RCCGGY	1 cut(s)	610
BssECI	CCNNGG	1 cut(s)	141
BssMI	GATC	6 cut(s)	72, 195, 309, 404, 570, 778
BssNI	GRCGYC	1 cut(s)	737
Bst2UI	CCWGG	2 cut(s)	142, 623
Bst4CI	ACNGT	1 cut(s)	277
BstACI	GRCGYC	1 cut(s)	737
BstAPI	GCANNNNNTGC	1 cut(s)	337
BstAUI	TGTACA	1 cut(s)	252
BstBAI	YACGTR	1 cut(s)	579
BstC8I	GCNNGC	6 cut(s)	235, 369, 376, 464, 483, 735
BstDEI	CTNAG	1 cut(s)	107
BstEII	GGTNACC	1 cut(s)	358
BstENI	CCTNNNNNAGG	2 cut(s)	110, 145
BstF5I	GGATG	2 cut(s)	252, 649
BstFNI	CGCG	7 cut(s)	203, 233, 305, 356, 365, 380, 768
BstH2I	RGCGCY	1 cut(s)	740
BstHHI	GCGC	8 cut(s)	205, 305, 331, 356, 367, 380, 739, 768
BstKTI	GATC	6 cut(s)	75, 198, 312, 407, 573, 781
BstMBI	GATC	6 cut(s)	72, 195, 309, 404, 570, 778
BstNI	CCWGG	2 cut(s)	142, 623
BstPI	GGTNACC	1 cut(s)	358
BstSCI	CCNGG	3 cut(s)	140, 596, 621
BstSLI	GKGCMC	2 cut(s)	477, 603
BstUI	CGCG	7 cut(s)	203, 233, 305, 356, 365, 380, 768
BstV1I	GCAGC	2 cut(s)	457, 682
BstV2I	GAAGAC	1 cut(s)	68
Bsu15I	ATCGAT	1 cut(s)	194
BsuRI	GGCC	1 cut(s)	610
BsuTUI	ATCGAT	1 cut(s)	194
BtgZI	GCGATG	1 cut(s)	767
BtsCI	GGATG	2 cut(s)	252, 649
BtsI	GCAGTG	1 cut(s)	222
BtsIMutI	CAGTG	2 cut(s)	115, 222
BtuMI	TCGCGA	1 cut(s)	233
Cac8I	GCNNGC	6 cut(s)	235, 369, 376, 464, 483, 735
CaiI	CAGNNNCTG	1 cut(s)	337
CfoI	GCGC	8 cut(s)	205, 305, 331, 356, 367, 380, 739, 768
Cfr10I	RCCGGY	1 cut(s)	610
Cfr13I	GGNCC	1 cut(s)	608
ClaI	ATCGAT	1 cut(s)	194
CseI	GACGC	4 cut(s)	73, 95, 221, 369
Csp6I	GTAC	1 cut(s)	253
CviAII	CATG	1 cut(s)	100
CviJI	RGCY	6 cut(s)	105, 124, 448, 481, 610, 745
CviKI_1	RGCY	6 cut(s)	105, 124, 448, 481, 610, 745
CviQI	GTAC	1 cut(s)	253
DdeI	CTNAG	1 cut(s)	107
DinI	GGCGCC	1 cut(s)	738
DpnI	GATC	6 cut(s)	74, 197, 311, 406, 572, 780
DpnII	GATC	6 cut(s)	72, 195, 309, 404, 570, 778
DraI	TTTAAA	1 cut(s)	16
EciI	GGCGGA	3 cut(s)	281, 548, 571
Eco32I	GATATC	1 cut(s)	10
Eco57I	CTGAAG	2 cut(s)	362, 488
Eco72I	CACGTG	1 cut(s)	579
Eco91I	GGTNACC	1 cut(s)	358
EcoNI	CCTNNNNNAGG	2 cut(s)	110, 145
EcoO65I	GGTNACC	1 cut(s)	358
EcoRII	CCWGG	2 cut(s)	140, 621
EcoRV	GATATC	1 cut(s)	10
EcoT22I	ATGCAT	1 cut(s)	188
EgeI	GGCGCC	1 cut(s)	738
EheI	GGCGCC	1 cut(s)	738
FaeI	CATG	1 cut(s)	103
FaiI	YATR	4 cut(s)	101, 493, 687, 784
FaqI	GGGAC	2 cut(s)	158, 286
FatI	CATG	1 cut(s)	99
FauI	CCCGC	5 cut(s)	429, 499, 518, 683, 761
Fnu4HI	GCNGC	8 cut(s)	56, 264, 372, 446, 460, 501, 504, 671
FokI	GGATG	2 cut(s)	259, 656
Fsp4HI	GCNGC	8 cut(s)	56, 264, 372, 446, 460, 501, 504, 671
GlaI	GCGC	8 cut(s)	204, 304, 330, 355, 366, 379, 738, 767
GluI	GCNGC	8 cut(s)	56, 264, 372, 446, 460, 501, 504, 671
HaeII	RGCGCY	1 cut(s)	740
HaeIII	GGCC	1 cut(s)	610
HapII	CCGG	3 cut(s)	597, 611, 740
HgaI	GACGC	4 cut(s)	73, 95, 221, 369
HhaI	GCGC	8 cut(s)	205, 305, 331, 356, 367, 380, 739, 768
Hin1I	GRCGYC	1 cut(s)	737
Hin1II	CATG	1 cut(s)	103
Hin6I	GCGC	8 cut(s)	203, 303, 329, 354, 365, 378, 737, 766
HinP1I	GCGC	8 cut(s)	203, 303, 329, 354, 365, 378, 737, 766
HindIII	AAGCTT	1 cut(s)	122
HinfI	GANTC	4 cut(s)	191, 334, 694, 757
HpaII	CCGG	3 cut(s)	597, 611, 740
HphI	GGTGA	6 cut(s)	304, 370, 433, 625, 721, 752
Hpy166II	GTNNAC	4 cut(s)	220, 253, 255, 397
Hpy188I	TCNGA	3 cut(s)	85, 412, 730
Hpy188III	TCNNGA	3 cut(s)	70, 232, 698
Hpy8I	GTNNAC	4 cut(s)	220, 253, 255, 397
Hpy99I	CGWCG	6 cut(s)	89, 212, 215, 230, 233, 385
HpyAV	CCTTC	3 cut(s)	286, 463, 706
HpyCH4III	ACNGT	1 cut(s)	277
HpyCH4IV	ACGT	3 cut(s)	42, 152, 578
HpyCH4V	TGCA	2 cut(s)	99, 186
HpyF3I	CTNAG	1 cut(s)	107
HpySE526I	ACGT	3 cut(s)	42, 152, 578
Hsp92I	GRCGYC	1 cut(s)	737
Hsp92II	CATG	1 cut(s)	103
HspAI	GCGC	8 cut(s)	203, 303, 329, 354, 365, 378, 737, 766
KasI	GGCGCC	1 cut(s)	736
Kzo9I	GATC	6 cut(s)	72, 195, 309, 404, 570, 778
LmnI	GCTCC	4 cut(s)	295, 433, 730, 742
Lsp1109I	GCAGC	2 cut(s)	457, 682
LweI	GCATC	1 cut(s)	195
MaeII	ACGT	3 cut(s)	42, 152, 578
MaeIII	GTNAC	2 cut(s)	358, 758
MalI	GATC	6 cut(s)	74, 197, 311, 406, 572, 780
MbiI	CCGCTC	1 cut(s)	436
MboI	GATC	6 cut(s)	72, 195, 309, 404, 570, 778
MboII	GAAGA	3 cut(s)	73, 301, 319
MfeI	CAATTG	1 cut(s)	390
MhlI	GDGCHC	2 cut(s)	477, 603
MluCI	AATT	4 cut(s)	37, 168, 390, 424
Mly113I	GGCGCC	1 cut(s)	737
MlyI	GAGTC	3 cut(s)	328, 703, 766
MmeI	TCCRAC	3 cut(s)	108, 656, 708
MnlI	CCTC	7 cut(s)	106, 116, 148, 187, 235, 552, 556
Mph1103I	ATGCAT	1 cut(s)	188
MseI	TTAA	4 cut(s)	15, 45, 155, 279
MspA1I	CMGCKG	2 cut(s)	448, 525
MspI	CCGG	3 cut(s)	597, 611, 740
MspR9I	CCNGG	3 cut(s)	142, 598, 623
MunI	CAATTG	1 cut(s)	390
MvaI	CCWGG	2 cut(s)	142, 623
MvnI	CGCG	7 cut(s)	203, 233, 305, 356, 365, 380, 768
NarI	GGCGCC	1 cut(s)	737
NciI	CCSGG	1 cut(s)	598
NdeII	GATC	6 cut(s)	72, 195, 309, 404, 570, 778
NlaIII	CATG	1 cut(s)	103
NlaIV	GGNNCC	2 cut(s)	609, 738
NmuCI	GTSAC	2 cut(s)	358, 758
NruI	TCGCGA	1 cut(s)	233
NsiI	ATGCAT	1 cut(s)	188
PcsI	WCGNNNNNNNCGW	3 cut(s)	207, 234, 575
PfeI	GAWTC	1 cut(s)	191
PkrI	GCNGC	8 cut(s)	57, 265, 373, 447, 461, 502, 505, 672
PleI	GAGTC	3 cut(s)	328, 702, 765
PluTI	GGCGCC	1 cut(s)	740
PmaCI	CACGTG	1 cut(s)	579
PmlI	CACGTG	1 cut(s)	579
PpsI	GAGTC	3 cut(s)	328, 702, 765
Ppu21I	YACGTR	1 cut(s)	579
Psp6I	CCWGG	2 cut(s)	140, 621
PspCI	CACGTG	1 cut(s)	579
PspEI	GGTNACC	1 cut(s)	358
PspGI	CCWGG	2 cut(s)	140, 621
PspN4I	GGNNCC	2 cut(s)	609, 738
PspPI	GGNCC	1 cut(s)	608
PstNI	CAGNNNCTG	1 cut(s)	337
PvuII	CAGCTG	1 cut(s)	448
RruI	TCGCGA	1 cut(s)	233
RsaI	GTAC	1 cut(s)	254
RsaNI	GTAC	1 cut(s)	253
SaqAI	TTAA	4 cut(s)	15, 45, 155, 279
SatI	GCNGC	8 cut(s)	56, 264, 372, 446, 460, 501, 504, 671
Sau3AI	GATC	6 cut(s)	72, 195, 309, 404, 570, 778
Sau96I	GGNCC	1 cut(s)	608
SchI	GAGTC	3 cut(s)	328, 703, 766
ScrFI	CCNGG	3 cut(s)	142, 598, 623
SduI	GDGCHC	2 cut(s)	477, 603
SfaNI	GCATC	1 cut(s)	195
SfoI	GGCGCC	1 cut(s)	738
Sse9I	AATT	4 cut(s)	37, 168, 390, 424
SspDI	GGCGCC	1 cut(s)	736
StyD4I	CCNGG	3 cut(s)	140, 596, 621
TaaI	ACNGT	1 cut(s)	277
TaiI	ACGT	3 cut(s)	45, 155, 581
TaqI	TCGA	4 cut(s)	179, 189, 194, 777
TasI	AATT	4 cut(s)	37, 168, 390, 424
TatI	WGTACW	1 cut(s)	252
TauI	GCSGC	6 cut(s)	58, 266, 374, 462, 503, 506
TfiI	GAWTC	1 cut(s)	191
Tru1I	TTAA	4 cut(s)	15, 45, 155, 279
Tru9I	TTAA	4 cut(s)	15, 45, 155, 279
TscAI	CASTG	2 cut(s)	115, 222
TseFI	GTSAC	2 cut(s)	358, 758
TseI	GCWGC	2 cut(s)	445, 670
Tsp45I	GTSAC	2 cut(s)	358, 758
TspGWI	ACGGA	2 cut(s)	13, 214
TspRI	CASTG	2 cut(s)	115, 222
XagI	CCTNNNNNAGG	2 cut(s)	110, 145
XapI	RAATTY	1 cut(s)	424
XcmI	CCANNNNNNNNNTGG	1 cut(s)	322
Zsp2I	ATGCAT	1 cut(s)	188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.