Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0016067

Physical Location & Seq

Genomic Coordinates Forward (+)

2866940 .. 2868352

Gene Structure 1413 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1039100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1413 bp

ATGCTGGCGGAGGCGGAGTCTATACCTCGGAGTAAGTTTGAAAACCTCGCGCATTCTGCCCCCAACATCCCCGCCTCCGCCAGTATGGTGACCGACCCCGACGTAGAATACCCGACACGGAACAGCAGTGCCTCCGCCCTCAGCGCGGCTTGCTCTCTTGACCCGACGCGAATGAGCGGTGAGTGTTCTCCGATGACAATGTCGCCCTGGAACAACACCTCCAGTTCCCCCTTCTCCAAGTCACCTTGGCAGCCGTTCGAGGAATCTAACGTTCCTCCGAACGGCCTTATTGGGTCTCTCCTCCGCGAGGAAGGCCATATCTACTCTCTCGCGGCCACAGGAGACCTGCTGTACACCGGTTCGGACAGCAAGAACATCCGGGTGTGGAAAAATCTCAAAGAATTCAGTGGATTCAAATCGAACAGTGGGCTCGTGAAAGCAATCGTCATTTCAGGCGACAAGCTCTTCACGGGTCACCAAGATGGAAAGATCCGGGTGTGGCGGGTCTCATCGAAAGACCAGAGCGTGCACAAACGCGCCGGGACTCTGCCTACAATGATGGATATCTTTAAATACTCCGTGAAACCCAGCAATTACGTTCAGGTGCGGCGGCAGAAGAAGCTCTGGATCAAGCATTCCGACGCAGTTTCGTGCCTGAGCCTCAGTGAGGACAAGAAGCTTCTTTACTCTGCCTCCTGGGACAGGACGTTAAAAGTGTGGCGAATTGAAACCTCGAAATGCATCGAATCGATCCACGCGCACGACGACGCGGTGAACTCCGTCGTCGCGAGCGTGGAGGGGATGGTGTACACGGGGGCGGCGGACGGGACGGTTAAAGTTTGGAAGAAGGAGCAGAGCGGGAAGATCATCAAGCACACTCTGGCGCAGACGCTGCTGAAGCAGGAGAGCGCGGTGACGGCGCTCGCTGCCAGCGCGTCGGGGTCAATAGTTTACTGCGGATCGTCAGACGGGTTGGTGAATTTCTGGGAGCGGGAGAAGCAGCTGTCGCACGGCGGCGTGCTGAAGGGGCACAAGCTGGCGGTACTCTGTTTGGCGGCGGCGGGGAACTTGGTATTCAGCGGGTCGGCAGACAAGACGATTTGCGTGTGGCGGAGGGAGGGAACGATCCACACGTGCCTGTCGGTTCTGTCCGGGCACACGGGGCCGGTGAAGTGCCTTGCGGTGGAGAAGGACAAGGATGTAAATGCGAGTAAAGCGGACGAGCAGCGGTGGATTGTGTATAGCGGGAGTCTGGATAAGTCGGTGAAGGTATGGGGGGTATCGGAGCAGGCGCCGGAGCTGACGGCGATGAGTCACCAGCGCGGGGGGTTCGATGCGGATTCGATTCCGTCCGATGGGAGTTATACGTCTTCGGCGGGTCGGGGTAGCAGCCATAACAAGAGGTTCCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000166 GO:0000278 GO:0000281 GO:0000910 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005826 GO:0005856 GO:0005938 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007010 GO:0007049 GO:0008092 GO:0008144 GO:0008150 GO:0008152 GO:0009846 GO:0009856 GO:0009987 GO:0015629 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016905 GO:0017022 GO:0017076 GO:0018107 GO:0018193 GO:0018210 GO:0019538 GO:0022402 GO:0022411 GO:0022414 GO:0030029 GO:0030036 GO:0030554 GO:0030863 GO:0030864 GO:0031033 GO:0031035 GO:0031037 GO:0031038 GO:0032153 GO:0032155 GO:0032501 GO:0032553 GO:0032555 GO:0032559 GO:0032984 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0043624 GO:0043933 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0044706 GO:0045159 GO:0046777 GO:0051301 GO:0051704 GO:0061640 GO:0070938 GO:0071704 GO:0071840 GO:0071944 GO:0097159 GO:0097367 GO:0099568 GO:0140096 GO:1901265 GO:1901363 GO:1901564 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

471

Amino Acids

51.02

Weight (kDa)

9.02

Isoelectric Point (pI)

41.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_SCAP	PF24017	101 - 335	4.7e-10	SCAP Beta-propeller
Beta-prop_Nup120_160	PF11715	102 - 252	3.8e-07	Nucleoporin Nup120/160, beta-propeller domain
Beta-prop_WDR36-Utp21_1st	PF25171	104 - 330	1.6e-07	WDR36/Utp21 first beta-propeller
Beta-prop_WDR5	PF25175	112 - 290	4.3e-16	WDR5 beta-propeller domain
WD40_WDHD1_1st	PF24817	151 - 289	3.5e-12	WDHD1 first WD40 domain
WDR55	PF24796	186 - 291	4.4e-11	WDR55
WD40_Gbeta	PF25391	202 - 370	5.5e-14	G protein beta WD-40 repeat protein
Beta-prop_TEP1_2nd	PF25047	208 - 284	5.6e-08	TEP-1 second beta-propeller
Beta-prop_THOC3	PF25174	210 - 408	2.1e-22	THOC3 beta-propeller domain
Beta-prop_WDR3_1st	PF25173	211 - 282	4.3e-12	WDR3 first beta-propeller domain
Beta-prop_EML	PF23409	211 - 373	1.1e-10	Echinoderm microtubule-associated protein first beta-propeller
WD40_CDC20-Fz	PF24807	211 - 352	9.4e-13	CDC20/Fizzy WD40 domain
WD40	PF00400	211 - 240	4.3e-07	WD domain, G-beta repeat
Beta-prop_WDR3_2nd	PF25172	212 - 332	2.5e-15	WDR3 second beta-propeller domain
EIF3I	PF24805	212 - 334	3.7e-06	EIF3I
WD40_Prp19	PF24814	214 - 333	8.3e-15	Prp19 WD40 domain
Beta-prop_EML_2	PF23414	218 - 351	7.1e-12	Echinoderm microtubule-associated protein second beta-propeller
NBCH_WD40	PF20426	221 - 286	4.9e-06	Neurobeachin beta propeller domain
Beta-prop_WDR90_POC16_2nd	PF23393	223 - 333	5.3e-07	WDR90/POC16, second beta-propeller
WD40_CDC20-Fz	PF24807	278 - 440	8.1e-12	CDC20/Fizzy WD40 domain
Beta-prop_WDR5	PF25175	292 - 404	5.8e-14	WDR5 beta-propeller domain
Beta-prop_WDR3_1st	PF25173	292 - 441	2.5e-19	WDR3 first beta-propeller domain
WD40_WDHD1_1st	PF24817	293 - 372	5.5e-06	WDHD1 first WD40 domain
WDR55	PF24796	299 - 409	5.2e-06	WDR55
Beta-prop_TEP1_2nd	PF25047	313 - 434	1.8e-10	TEP-1 second beta-propeller
WD40_Prp19	PF24814	340 - 411	1.6e-06	Prp19 WD40 domain
WD40_Prp19	PF24814	352 - 456	5.4e-09	Prp19 WD40 domain
Beta-prop_THOC3	PF25174	352 - 433	2.4e-07	THOC3 beta-propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0016067)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26490
fragaria_vesca	FvH4_2g40541
malus_domestica	MD00G1038200.v1.1 MD08G1039100.v1.1
prunus_persica	Prupe.1G386600_v2.0.a1
pyrus_communis	pycom08g03080
rosa_chinensis	RchiOBHm_Chr6g0300181
rosa_laevigata	RLG00000011360
rosa_multiflora	Rmu_sc0001670.1_g000038
rosa_roxburghii	Rroxscaffold_7G00168030
rosa_samantha	Rh6AG406000 Rh6BG414000 Rh6CG421200 Rh6DG406800
rosa_wichuraiana	Rw6G035540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	354
AccB1I	GGYRCC	1 cut(s)	1291
AccBSI	CCGCTC	3 cut(s)	177, 858, 991
AclI	AACGTT	1 cut(s)	270
AclWI	GGATC	5 cut(s)	484, 635, 745, 967, 1120
AcoI	YGGCCR	1 cut(s)	333
AcsI	RAATTY	2 cut(s)	401, 979
AcuI	CTGAAG	2 cut(s)	917, 1043
AcvI	CACGTG	1 cut(s)	1134
AcyI	GRCGYC	1 cut(s)	1292
AfaI	GTAC	3 cut(s)	353, 809, 1044
AfiI	CCNNNNNNNGG	8 cut(s)	145, 281, 307, 667, 702, 1183, 1324, 1355
AflIII	ACRYGT	1 cut(s)	1131
AgeI	ACCGGT	1 cut(s)	356
AgsI	TTSAA	3 cut(s)	41, 415, 728
AjnI	CCWGG	2 cut(s)	206, 695
AloI	GAACNNNNNNTCC	2 cut(s)	203, 235
AluBI	AGCT	6 cut(s)	463, 622, 679, 1003, 1036, 1300
AluI	AGCT	6 cut(s)	463, 622, 679, 1003, 1036, 1300
Alw21I	GWGCWC	1 cut(s)	531
Alw26I	GTCTC	3 cut(s)	300, 336, 511
Alw44I	GTGCAC	1 cut(s)	527
AlwI	GGATC	5 cut(s)	484, 635, 745, 967, 1120
AlwNI	CAGNNNCTG	1 cut(s)	892
AoxI	GGCC	4 cut(s)	283, 313, 333, 1163
ApaLI	GTGCAC	1 cut(s)	527
ApeKI	GCWGC	6 cut(s)	250, 892, 926, 1000, 1225, 1389
ApoI	RAATTY	2 cut(s)	401, 979
AsiGI	ACCGGT	1 cut(s)	356
AspS9I	GGNCC	1 cut(s)	1163
AsuC2I	CCSGG	4 cut(s)	380, 494, 541, 1153
BaeGI	GKGCMC	3 cut(s)	531, 1032, 1158
BanI	GGYRCC	1 cut(s)	1291
BanII	GRGCYC	1 cut(s)	432
BarI	GAAGNNNNNNTAC	2 cut(s)	668, 700
BauI	CACGAG	1 cut(s)	431
BbrPI	CACGTG	1 cut(s)	1134
BbsI	GAAGAC	1 cut(s)	1362
Bbv12I	GWGCWC	1 cut(s)	531
BbvCI	CCTCAGC	1 cut(s)	140
BbvI	GCAGC	6 cut(s)	262, 879, 913, 1012, 1237, 1401
BccI	CCATC	4 cut(s)	476, 553, 796, 1349
BceAI	ACGGC	5 cut(s)	238, 298, 933, 1027, 1320
BciT130I	CCWGG	2 cut(s)	208, 697
BcnI	CCSGG	4 cut(s)	380, 494, 541, 1153
BcoDI	GTCTC	3 cut(s)	300, 336, 511
BfoI	RGCGCY	2 cut(s)	923, 1295
BfuAI	ACCTGC	1 cut(s)	354
Bme1390I	CCNGG	6 cut(s)	208, 380, 494, 541, 697, 1153
BmgT120I	GGNCC	1 cut(s)	1163
BmiI	GGNNCC	3 cut(s)	1164, 1293, 1406
BmrFI	CCNGG	6 cut(s)	208, 380, 494, 541, 697, 1153
BmsI	GCATC	2 cut(s)	750, 1324
BpiI	GAAGAC	1 cut(s)	1362
BpmI	CTGGAG	1 cut(s)	205
Bpu10I	CCTNAGC	2 cut(s)	140, 656
BpuMI	CCSGG	4 cut(s)	380, 494, 541, 1153
Bsa29I	ATCGAT	1 cut(s)	749
BsaAI	YACGTR	1 cut(s)	1134
BsaBI	GATNNNNATC	2 cut(s)	415, 563
BsaHI	GRCGYC	1 cut(s)	1292
BsaI	GGTCTC	3 cut(s)	300, 336, 511
BsaJI	CCNNGG	4 cut(s)	26, 206, 245, 696
BsaWI	WCCGGW	1 cut(s)	356
BsaXI	ACNNNNNCTCC	5 cut(s)	32, 203, 233, 677, 707
Bsc4I	CCNNNNNNNGG	8 cut(s)	145, 281, 307, 667, 702, 1183, 1324, 1355
Bse118I	RCCGGY	2 cut(s)	356, 1165
Bse1I	ACTGG	2 cut(s)	81, 222
Bse8I	GATNNNNATC	2 cut(s)	415, 563
BseBI	CCWGG	2 cut(s)	208, 697
BseCI	ATCGAT	1 cut(s)	749
BseDI	CCNNGG	4 cut(s)	26, 206, 245, 696
BseGI	GGATG	4 cut(s)	66, 375, 807, 1204
BseJI	GATNNNNATC	2 cut(s)	415, 563
BseLI	CCNNNNNNNGG	8 cut(s)	145, 281, 307, 667, 702, 1183, 1324, 1355
BseMII	CTCAG	3 cut(s)	154, 647, 676
BseNI	ACTGG	2 cut(s)	81, 222
BseRI	GAGGAG	1 cut(s)	290
BseSI	GKGCMC	3 cut(s)	531, 1032, 1158
BseXI	GCAGC	6 cut(s)	262, 879, 913, 1012, 1237, 1401
BseYI	CCCAGC	1 cut(s)	587
BshFI	GGCC	4 cut(s)	285, 315, 335, 1165
BshNI	GGYRCC	1 cut(s)	1291
BshTI	ACCGGT	1 cut(s)	356
BshVI	ATCGAT	1 cut(s)	749
BsiHKAI	GWGCWC	1 cut(s)	531
BsiSI	CCGG	7 cut(s)	357, 379, 493, 540, 1152, 1166, 1295
BslFI	GGGAC	3 cut(s)	556, 713, 841
BslI	CCNNNNNNNGG	8 cut(s)	145, 281, 307, 667, 702, 1183, 1324, 1355
BsmAI	GTCTC	3 cut(s)	300, 336, 511
BsmFI	GGGAC	3 cut(s)	556, 713, 841
BsmI	GAATGC	2 cut(s)	52, 634
BsnI	GGCC	4 cut(s)	285, 315, 335, 1165
Bso31I	GGTCTC	3 cut(s)	300, 336, 511
Bsp1286I	GDGCHC	4 cut(s)	432, 531, 1032, 1158
Bsp1407I	TGTACA	2 cut(s)	351, 807
Bsp143I	GATC	6 cut(s)	489, 627, 750, 864, 959, 1125
Bsp68I	TCGCGA	1 cut(s)	788
BspANI	GGCC	4 cut(s)	285, 315, 335, 1165
BspCNI	CTCAG	3 cut(s)	153, 648, 675
BspDI	ATCGAT	1 cut(s)	749
BspLI	GGNNCC	3 cut(s)	1164, 1293, 1406
BspMI	ACCTGC	1 cut(s)	354
BspPI	GGATC	5 cut(s)	484, 635, 745, 967, 1120
BspQI	GCTCTTC	1 cut(s)	470
BspT107I	GGYRCC	1 cut(s)	1291
BspTNI	GGTCTC	3 cut(s)	300, 336, 511
BsrBI	CCGCTC	3 cut(s)	177, 858, 991
BsrFI	RCCGGY	2 cut(s)	356, 1165
BsrGI	TGTACA	2 cut(s)	351, 807
BsrI	ACTGG	2 cut(s)	81, 222
BssAI	RCCGGY	2 cut(s)	356, 1165
BssECI	CCNNGG	4 cut(s)	26, 206, 245, 696
BssMI	GATC	6 cut(s)	489, 627, 750, 864, 959, 1125
BssNI	GRCGYC	1 cut(s)	1292
BssSI	CACGAG	1 cut(s)	431
BssT1I	CCWWGG	1 cut(s)	245
Bst2BI	CACGAG	1 cut(s)	431
Bst2UI	CCWGG	2 cut(s)	208, 697
Bst4CI	ACNGT	2 cut(s)	425, 832
Bst6I	CTCTTC	1 cut(s)	470
BstACI	GRCGYC	1 cut(s)	1292
BstAPI	GCANNNNNTGC	1 cut(s)	892
BstAUI	TGTACA	2 cut(s)	351, 807
BstBAI	YACGTR	1 cut(s)	1134
BstC8I	GCNNGC	9 cut(s)	6, 151, 527, 790, 924, 931, 1019, 1038, 1290
BstDEI	CTNAG	3 cut(s)	140, 656, 662
BstEII	GGTNACC	2 cut(s)	88, 473
BstENI	CCTNNNNNAGG	3 cut(s)	305, 665, 700
BstF5I	GGATG	4 cut(s)	66, 375, 807, 1204
BstH2I	RGCGCY	2 cut(s)	923, 1295
BstKTI	GATC	6 cut(s)	492, 630, 753, 867, 962, 1128
BstMAI	GTCTC	3 cut(s)	300, 336, 511
BstMBI	GATC	6 cut(s)	489, 627, 750, 864, 959, 1125
BstNI	CCWGG	2 cut(s)	208, 697
BstPI	GGTNACC	2 cut(s)	88, 473
BstSCI	CCNGG	6 cut(s)	206, 378, 492, 539, 695, 1151
BstSLI	GKGCMC	3 cut(s)	531, 1032, 1158
BstV1I	GCAGC	6 cut(s)	262, 879, 913, 1012, 1237, 1401
BstV2I	GAAGAC	1 cut(s)	1362
BstX2I	RGATCY	1 cut(s)	489
BstYI	RGATCY	1 cut(s)	489
Bsu15I	ATCGAT	1 cut(s)	749
BsuRI	GGCC	4 cut(s)	285, 315, 335, 1165
BsuTUI	ATCGAT	1 cut(s)	749
BtgZI	GCGATG	1 cut(s)	1322
BtsCI	GGATG	4 cut(s)	66, 375, 807, 1204
BtsI	GCAGTG	1 cut(s)	133
BtsIMutI	CAGTG	4 cut(s)	133, 412, 430, 670
BtuMI	TCGCGA	1 cut(s)	788
BveI	ACCTGC	1 cut(s)	354
Cac8I	GCNNGC	9 cut(s)	6, 151, 527, 790, 924, 931, 1019, 1038, 1290
CaiI	CAGNNNCTG	1 cut(s)	892
Cfr10I	RCCGGY	2 cut(s)	356, 1165
Cfr13I	GGNCC	1 cut(s)	1163
ClaI	ATCGAT	1 cut(s)	749
CseI	GACGC	5 cut(s)	175, 650, 776, 898, 924
Csp6I	GTAC	3 cut(s)	352, 808, 1043
CspAI	ACCGGT	1 cut(s)	356
CviQI	GTAC	3 cut(s)	352, 808, 1043
DdeI	CTNAG	3 cut(s)	140, 656, 662
DinI	GGCGCC	1 cut(s)	1293
DpnI	GATC	6 cut(s)	491, 629, 752, 866, 961, 1127
DpnII	GATC	6 cut(s)	489, 627, 750, 864, 959, 1125
DraI	TTTAAA	1 cut(s)	571
EaeI	YGGCCR	1 cut(s)	333
Eam1104I	CTCTTC	1 cut(s)	470
EarI	CTCTTC	1 cut(s)	470
EciI	GGCGGA	6 cut(s)	23, 29, 67, 124, 836, 1126
Eco130I	CCWWGG	1 cut(s)	245
Eco24I	GRGCYC	1 cut(s)	432
Eco31I	GGTCTC	3 cut(s)	300, 336, 511
Eco32I	GATATC	1 cut(s)	565
Eco57I	CTGAAG	2 cut(s)	917, 1043
Eco72I	CACGTG	1 cut(s)	1134
Eco91I	GGTNACC	2 cut(s)	88, 473
EcoNI	CCTNNNNNAGG	3 cut(s)	305, 665, 700
EcoO65I	GGTNACC	2 cut(s)	88, 473
EcoRI	GAATTC	1 cut(s)	401
EcoRII	CCWGG	2 cut(s)	206, 695
EcoRV	GATATC	1 cut(s)	565
EcoT14I	CCWWGG	1 cut(s)	245
EcoT22I	ATGCAT	1 cut(s)	743
EcoT38I	GRGCYC	1 cut(s)	432
EgeI	GGCGCC	1 cut(s)	1293
EheI	GGCGCC	1 cut(s)	1293
ErhI	CCWWGG	1 cut(s)	245
FaiI	YATR	7 cut(s)	23, 86, 318, 1242, 1273, 1365, 1395
FaqI	GGGAC	3 cut(s)	556, 713, 841
FauI	CCCGC	9 cut(s)	79, 495, 851, 984, 1054, 1073, 1238, 1316, 1369
FokI	GGATG	4 cut(s)	53, 362, 814, 1211
FriOI	GRGCYC	1 cut(s)	432
GsaI	CCCAGC	1 cut(s)	591
GsuI	CTGGAG	1 cut(s)	205
HaeII	RGCGCY	2 cut(s)	923, 1295
HaeIII	GGCC	4 cut(s)	285, 315, 335, 1165
HapII	CCGG	7 cut(s)	357, 379, 493, 540, 1152, 1166, 1295
HgaI	GACGC	5 cut(s)	175, 650, 776, 898, 924
Hin1I	GRCGYC	1 cut(s)	1292
HindIII	AAGCTT	1 cut(s)	677
HinfI	GANTC	9 cut(s)	17, 263, 411, 544, 746, 1249, 1312, 1340, 1345
HpaII	CCGG	7 cut(s)	357, 379, 493, 540, 1152, 1166, 1295
Hpy166II	GTNNAC	6 cut(s)	354, 529, 775, 808, 810, 952
Hpy188I	TCNGA	9 cut(s)	30, 192, 279, 364, 640, 967, 1285, 1354, 1409
Hpy188III	TCNNGA	5 cut(s)	158, 433, 625, 787, 1253
Hpy8I	GTNNAC	6 cut(s)	354, 529, 775, 808, 810, 952
Hpy99I	CGWCG	8 cut(s)	104, 169, 644, 767, 770, 785, 788, 940
HpyAV	CCTTC	6 cut(s)	241, 305, 841, 1018, 1183, 1261
HpyCH4III	ACNGT	2 cut(s)	425, 832
HpyCH4IV	ACGT	6 cut(s)	102, 270, 597, 707, 1133, 1367
HpyCH4V	TGCA	2 cut(s)	529, 741
HpyF3I	CTNAG	3 cut(s)	140, 656, 662
HpySE526I	ACGT	6 cut(s)	102, 270, 597, 707, 1133, 1367
Hsp92I	GRCGYC	1 cut(s)	1292
KasI	GGCGCC	1 cut(s)	1291
Kzo9I	GATC	6 cut(s)	489, 627, 750, 864, 959, 1125
LguI	GCTCTTC	1 cut(s)	470
LmnI	GCTCC	4 cut(s)	850, 988, 1285, 1297
Lsp1109I	GCAGC	6 cut(s)	262, 879, 913, 1012, 1237, 1401
LweI	GCATC	2 cut(s)	750, 1324
MaeII	ACGT	6 cut(s)	102, 270, 597, 707, 1133, 1367
MaeIII	GTNAC	5 cut(s)	88, 240, 473, 913, 1313
MalI	GATC	6 cut(s)	491, 629, 752, 866, 961, 1127
MbiI	CCGCTC	3 cut(s)	177, 858, 991
MboI	GATC	6 cut(s)	489, 627, 750, 864, 959, 1125
MboII	GAAGA	5 cut(s)	457, 628, 856, 874, 1362
MflI	RGATCY	1 cut(s)	489
MhlI	GDGCHC	4 cut(s)	432, 531, 1032, 1158
MluCI	AATT	4 cut(s)	401, 592, 723, 979
Mly113I	GGCGCC	1 cut(s)	1292
MlyI	GAGTC	4 cut(s)	26, 538, 1258, 1321
MmeI	TCCRAC	1 cut(s)	663
Mph1103I	ATGCAT	1 cut(s)	743
MseI	TTAA	3 cut(s)	570, 710, 834
MslI	CAYNNNNRTG	2 cut(s)	380, 480
MspA1I	CMGCKG	3 cut(s)	1003, 1080, 1228
MspI	CCGG	7 cut(s)	357, 379, 493, 540, 1152, 1166, 1295
MspR9I	CCNGG	6 cut(s)	208, 380, 494, 541, 697, 1153
Mva1269I	GAATGC	2 cut(s)	52, 634
MvaI	CCWGG	2 cut(s)	208, 697
NarI	GGCGCC	1 cut(s)	1292
NciI	CCSGG	4 cut(s)	380, 494, 541, 1153
NdeII	GATC	6 cut(s)	489, 627, 750, 864, 959, 1125
NlaIV	GGNNCC	3 cut(s)	1164, 1293, 1406
NmuCI	GTSAC	5 cut(s)	88, 240, 473, 913, 1313
NruI	TCGCGA	1 cut(s)	788
NsiI	ATGCAT	1 cut(s)	743
PciSI	GCTCTTC	1 cut(s)	470
PcsI	WCGNNNNNNNCGW	3 cut(s)	762, 789, 1130
PctI	GAATGC	2 cut(s)	52, 634
PfeI	GAWTC	5 cut(s)	263, 411, 746, 1340, 1345
PflFI	GACNNNGTC	1 cut(s)	199
PinAI	ACCGGT	1 cut(s)	356
PleI	GAGTC	4 cut(s)	25, 538, 1257, 1320
PluTI	GGCGCC	1 cut(s)	1295
PmaCI	CACGTG	1 cut(s)	1134
PmlI	CACGTG	1 cut(s)	1134
PpsI	GAGTC	4 cut(s)	25, 538, 1257, 1320
Ppu21I	YACGTR	1 cut(s)	1134
Psp1406I	AACGTT	1 cut(s)	270
Psp6I	CCWGG	2 cut(s)	206, 695
PspCI	CACGTG	1 cut(s)	1134
PspEI	GGTNACC	2 cut(s)	88, 473
PspFI	CCCAGC	1 cut(s)	587
PspGI	CCWGG	2 cut(s)	206, 695
PspN4I	GGNNCC	3 cut(s)	1164, 1293, 1406
PspPI	GGNCC	1 cut(s)	1163
PstNI	CAGNNNCTG	1 cut(s)	892
PsuI	RGATCY	1 cut(s)	489
PsyI	GACNNNGTC	1 cut(s)	199
PvuII	CAGCTG	1 cut(s)	1003
RruI	TCGCGA	1 cut(s)	788
RsaI	GTAC	3 cut(s)	353, 809, 1044
RsaNI	GTAC	3 cut(s)	352, 808, 1043
RseI	CAYNNNNRTG	2 cut(s)	380, 480
SapI	GCTCTTC	1 cut(s)	470
SaqAI	TTAA	3 cut(s)	570, 710, 834
Sau3AI	GATC	6 cut(s)	489, 627, 750, 864, 959, 1125
Sau96I	GGNCC	1 cut(s)	1163
SchI	GAGTC	4 cut(s)	26, 538, 1258, 1321
ScrFI	CCNGG	6 cut(s)	208, 380, 494, 541, 697, 1153
SduI	GDGCHC	4 cut(s)	432, 531, 1032, 1158
SfaNI	GCATC	2 cut(s)	750, 1324
SfoI	GGCGCC	1 cut(s)	1293
SmiMI	CAYNNNNRTG	2 cut(s)	380, 480
Sse9I	AATT	4 cut(s)	401, 592, 723, 979
SspDI	GGCGCC	1 cut(s)	1291
StyD4I	CCNGG	6 cut(s)	206, 378, 492, 539, 695, 1151
StyI	CCWWGG	1 cut(s)	245
TaaI	ACNGT	2 cut(s)	425, 832
TaiI	ACGT	6 cut(s)	105, 273, 600, 710, 1136, 1370
TaqI	TCGA	8 cut(s)	258, 419, 512, 734, 744, 749, 1332, 1343
TaqII	GACCGA	1 cut(s)	107
TasI	AATT	4 cut(s)	401, 592, 723, 979
TatI	WGTACW	2 cut(s)	351, 807
TauI	GCSGC	8 cut(s)	149, 335, 610, 613, 821, 1017, 1058, 1061
TfiI	GAWTC	5 cut(s)	263, 411, 746, 1340, 1345
Tru1I	TTAA	3 cut(s)	570, 710, 834
Tru9I	TTAA	3 cut(s)	570, 710, 834
TscAI	CASTG	4 cut(s)	133, 412, 430, 670
TseFI	GTSAC	5 cut(s)	88, 240, 473, 913, 1313
TseI	GCWGC	6 cut(s)	250, 892, 926, 1000, 1225, 1389
Tsp45I	GTSAC	5 cut(s)	88, 240, 473, 913, 1313
TspGWI	ACGGA	4 cut(s)	133, 568, 769, 1338
TspRI	CASTG	4 cut(s)	133, 412, 430, 670
Tth111I	GACNNNGTC	1 cut(s)	199
VneI	GTGCAC	1 cut(s)	527
XagI	CCTNNNNNAGG	3 cut(s)	305, 665, 700
XapI	RAATTY	2 cut(s)	401, 979
Zsp2I	ATGCAT	1 cut(s)	743

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.