Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007333

Physical Location & Seq

Genomic Coordinates Forward (+)

12487248 .. 12489613

Gene Structure 2366 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G29070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGCCTCCTTCCGCTCTCGATCGTCTTGCTTCTTTGCATATTGAATACCCAATGCTGTTTCAACTGAGTAATGTTTCTGTTGAGAAGACCTCACATTGTGGTGTACTAGAATTCACTGCAGACGAAGGCCTAGTTTACTTGCCATATTGGATGATGCAAAACATGTCTCTTGAAGAGGGAGACGTTATGCAAGTTAAGAATATCAGCTTGGTAAAAGGGACTTACATCAAGCTGCAGCCTCACACTCAAGATTTCTTGGATATTTCCAACCCAAAAGCCATCTTGGAGACTACGCTTAGGAGTTACTCTTGCTTAACCACGGGTGATACAATTATGGTTCCGTATAACAACAAGCAATATTACATCAATGTGGTTGAGGCAAAACCTTCTTCAGCTGTGAGTATTATCGAAACGGATTGTGAGGTTGATTTTGCTCCTCCTCTTGATTACAAAGAACCTGAGAAGCCACAGAAGTTGACTCCTTCAAACAAACGACCTCTCCAAGTTAAAGAAGAAGAAGAACCTGCAAGCAAAGTTCCCAAATTCACGCCGTTCACTGGATCAGGAAAACGTTTAGATGGAAAAGCACAAACACAAACTGAACCAGAAGATACAAAACAGCAAGAAAAGCCGACTGAGAATGGGAAAGACGATGAGAAGTTGTCAGTCACTACACCAAGGCAAATATCAGGAAAGCTCGTCTTTGGTTCAAACAGCAAATCAGCTGCAAAAGAAACAGCGAAAGTTGATGATCCAAAGAACATTGTGCAAGAGAGCTCAACAAAATCCGATGAAGCTAAGTTCAAAGTGTTCACAGGGAAGAAATACTCACTCAATGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001817 GO:0001818 GO:0002682 GO:0002683 GO:0002697 GO:0002698 GO:0002831 GO:0002832 GO:0003674 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009966 GO:0009968 GO:0009987 GO:0010646 GO:0010648 GO:0012505 GO:0016020 GO:0019538 GO:0019899 GO:0019941 GO:0023051 GO:0023057 GO:0030163 GO:0031347 GO:0031348 GO:0031984 GO:0032101 GO:0032102 GO:0032479 GO:0032480 GO:0032991 GO:0034098 GO:0036501 GO:0039531 GO:0039532 GO:0039535 GO:0039536 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0043900 GO:0043901 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0045088 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050687 GO:0050688 GO:0050776 GO:0050789 GO:0050794 GO:0051117 GO:0051239 GO:0051241 GO:0051603 GO:0065007 GO:0071704 GO:0080134 GO:0098796 GO:0098827 GO:1901564 GO:1901565 GO:1901575 GO:1902531 GO:1902532

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

UFD1

Protein Analysis

280

Amino Acids

31.25

Weight (kDa)

5.46

Isoelectric Point (pI)

45.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UFD1_N1	PF03152	1 - 70	6.8e-29	Ubiquitin fusion degradation protein UFD1, N-terminal subdomain 1
UFD1_N2	PF24842	72 - 147	1.9e-37	Ubiquitin fusion degradation protein UFD1, N-terminal subdomain 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007333)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29070 AT2G29070 AT2G29070
fragaria_vesca	FvH4_3g36770 FvH4_3g36770
malus_domestica	MD03G1088700.v1.1 MD11G1097700.v1.1
prunus_persica	Prupe.6G073100_v2.0.a1 Prupe.6G073100_v2.0.a1
pyrus_communis	pycom03g07030 pycom11g08240
rosa_chinensis	RchiOBHm_Chr5g0065821
rosa_laevigata	RLG00000035819
rosa_multiflora	Rmu_sc0042868.1_g000003
rosa_roxburghii	Rroxscaffold_1G00015330
rosa_rugosa	Rorug05G0374000 Rorug05G0374000 Rorug05G0374000 Rorug05G0374000 Rorug05G0374000
rosa_samantha	Rh5AG432700 Rh5BG449000 Rh5CG471200 Rh5DG462500
rosa_wichuraiana	Rw5G040580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	532
AccBSI	CCGCTC	1 cut(s)	14
AciI	CCGC	1 cut(s)	12
AclI	AACGTT	1 cut(s)	571
AclWI	GGATC	2 cut(s)	568, 746
AcsI	RAATTY	2 cut(s)	110, 542
AcuI	CTGAAG	1 cut(s)	375
AdeI	CACNNNGTG	1 cut(s)	98
AfaI	GTAC	1 cut(s)	105
AfiI	CCNNNNNNNGG	1 cut(s)	557
AflIII	ACRYGT	1 cut(s)	162
AgsI	TTSAA	6 cut(s)	44, 62, 173, 486, 711, 805
AjuI	GAANNNNNNNTTGG	2 cut(s)	191, 223
AluBI	AGCT	7 cut(s)	207, 232, 395, 697, 725, 777, 797
AluI	AGCT	7 cut(s)	207, 232, 395, 697, 725, 777, 797
Alw21I	GWGCWC	1 cut(s)	779
Alw26I	GTCTC	3 cut(s)	171, 174, 281
AlwI	GGATC	2 cut(s)	568, 746
AoxI	GGCC	1 cut(s)	127
ApeKI	GCWGC	3 cut(s)	232, 235, 725
ApoI	RAATTY	2 cut(s)	110, 542
AsuHPI	GGTGA	1 cut(s)	335
BanII	GRGCYC	1 cut(s)	779
BbsI	GAAGAC	1 cut(s)	92
Bbv12I	GWGCWC	1 cut(s)	779
BbvI	GCAGC	3 cut(s)	219, 247, 712
BccI	CCATC	2 cut(s)	287, 572
BceAI	ACGGC	1 cut(s)	535
BcgI	CGANNNNNNTGC	2 cut(s)	8, 42
BcoDI	GTCTC	3 cut(s)	171, 174, 281
BfaI	CTAG	2 cut(s)	107, 131
BfmI	CTRYAG	2 cut(s)	117, 233
BfuAI	ACCTGC	1 cut(s)	532
BisI	GCNGC	3 cut(s)	233, 236, 726
BlsI	GCNGC	3 cut(s)	234, 237, 727
BmiI	GGNNCC	1 cut(s)	339
BmsI	GCATC	1 cut(s)	144
BpiI	GAAGAC	1 cut(s)	92
BplI	GAGNNNNNCTC	2 cut(s)	74, 106
Bpu10I	CCTNAGC	1 cut(s)	296
BpuEI	CTTGAG	1 cut(s)	231
BsaJI	CCNNGG	2 cut(s)	318, 677
BsaXI	ACNNNNNCTCC	2 cut(s)	483, 513
Bsc4I	CCNNNNNNNGG	1 cut(s)	557
Bse1I	ACTGG	1 cut(s)	562
BseDI	CCNNGG	2 cut(s)	318, 677
BseGI	GGATG	1 cut(s)	156
BseLI	CCNNNNNNNGG	1 cut(s)	557
BseMII	CTCAG	3 cut(s)	56, 450, 627
BseNI	ACTGG	1 cut(s)	562
BseRI	GAGGAG	2 cut(s)	426, 429
BseXI	GCAGC	3 cut(s)	219, 247, 712
Bsh1285I	CGRYCG	1 cut(s)	22
BshFI	GGCC	1 cut(s)	129
BsiEI	CGRYCG	1 cut(s)	22
BsiHKAI	GWGCWC	1 cut(s)	779
BslFI	GGGAC	1 cut(s)	232
BslI	CCNNNNNNNGG	1 cut(s)	557
BsmAI	GTCTC	3 cut(s)	171, 174, 281
BsmBI	CGTCTC	1 cut(s)	174
BsmFI	GGGAC	1 cut(s)	232
BsnI	GGCC	1 cut(s)	129
Bsp1286I	GDGCHC	1 cut(s)	779
Bsp143I	GATC	3 cut(s)	19, 560, 751
BspACI	CCGC	1 cut(s)	12
BspANI	GGCC	1 cut(s)	129
BspCNI	CTCAG	3 cut(s)	57, 451, 628
BspLI	GGNNCC	1 cut(s)	339
BspMAI	CTGCAG	2 cut(s)	121, 237
BspMI	ACCTGC	1 cut(s)	532
BspPI	GGATC	2 cut(s)	568, 746
BsrBI	CCGCTC	1 cut(s)	14
BsrI	ACTGG	1 cut(s)	562
BssECI	CCNNGG	2 cut(s)	318, 677
BssMI	GATC	3 cut(s)	19, 560, 751
BssT1I	CCWWGG	1 cut(s)	677
Bst6I	CTCTTC	1 cut(s)	168
BstC8I	GCNNGC	1 cut(s)	529
BstDEI	CTNAG	5 cut(s)	65, 296, 459, 636, 798
BstDSI	CCRYGG	1 cut(s)	318
BstF5I	GGATG	1 cut(s)	156
BstKTI	GATC	3 cut(s)	22, 563, 754
BstMAI	GTCTC	3 cut(s)	171, 174, 281
BstMBI	GATC	3 cut(s)	19, 560, 751
BstMCI	CGRYCG	1 cut(s)	22
BstMWI	GCNNNNNNNGC	1 cut(s)	628
BstNSI	RCATGY	1 cut(s)	166
BstSFI	CTRYAG	2 cut(s)	117, 233
BstV1I	GCAGC	3 cut(s)	219, 247, 712
BstV2I	GAAGAC	1 cut(s)	92
BsuRI	GGCC	1 cut(s)	129
BtgI	CCRYGG	1 cut(s)	318
BtsCI	GGATG	1 cut(s)	156
BtsI	GCAGTG	1 cut(s)	114
BtsIMutI	CAGTG	2 cut(s)	114, 555
BveI	ACCTGC	1 cut(s)	532
Cac8I	GCNNGC	1 cut(s)	529
Csp6I	GTAC	1 cut(s)	104
CspCI	CAANNNNNGTGG	2 cut(s)	456, 491
CviAII	CATG	1 cut(s)	163
CviQI	GTAC	1 cut(s)	104
DdeI	CTNAG	5 cut(s)	65, 296, 459, 636, 798
DpnI	GATC	3 cut(s)	21, 562, 753
DpnII	GATC	3 cut(s)	19, 560, 751
DraIII	CACNNNGTG	1 cut(s)	98
Eam1104I	CTCTTC	1 cut(s)	168
EarI	CTCTTC	1 cut(s)	168
Ecl136II	GAGCTC	1 cut(s)	777
Eco130I	CCWWGG	1 cut(s)	677
Eco147I	AGGCCT	1 cut(s)	129
Eco24I	GRGCYC	1 cut(s)	779
Eco53kI	GAGCTC	1 cut(s)	777
Eco57I	CTGAAG	1 cut(s)	375
EcoICRI	GAGCTC	1 cut(s)	777
EcoRI	GAATTC	1 cut(s)	110
EcoT14I	CCWWGG	1 cut(s)	677
EcoT38I	GRGCYC	1 cut(s)	779
ErhI	CCWWGG	1 cut(s)	677
Esp3I	CGTCTC	1 cut(s)	174
FaeI	CATG	1 cut(s)	166
FaiI	YATR	6 cut(s)	39, 145, 164, 188, 335, 345
FalI	AAGNNNNNCTT	2 cut(s)	686, 718
FaqI	GGGAC	1 cut(s)	232
FatI	CATG	1 cut(s)	162
Fnu4HI	GCNGC	3 cut(s)	233, 236, 726
FokI	GGATG	1 cut(s)	163
FriOI	GRGCYC	1 cut(s)	779
Fsp4HI	GCNGC	3 cut(s)	233, 236, 726
FspBI	CTAG	2 cut(s)	107, 131
GluI	GCNGC	3 cut(s)	233, 236, 726
HaeIII	GGCC	1 cut(s)	129
Hin1II	CATG	1 cut(s)	166
HincII	GTYRAC	1 cut(s)	477
HindII	GTYRAC	1 cut(s)	477
HinfI	GANTC	1 cut(s)	478
HphI	GGTGA	1 cut(s)	335
Hpy166II	GTNNAC	5 cut(s)	104, 136, 477, 555, 813
Hpy188I	TCNGA	1 cut(s)	790
Hpy188III	TCNNGA	6 cut(s)	17, 170, 248, 443, 564, 690
Hpy8I	GTNNAC	5 cut(s)	104, 136, 477, 555, 813
HpyAV	CCTTC	4 cut(s)	18, 119, 396, 492
HpyCH4IV	ACGT	2 cut(s)	183, 571
HpyCH4V	TGCA	8 cut(s)	37, 119, 157, 190, 235, 527, 728, 769
HpyF10VI	GCNNNNNNNGC	1 cut(s)	628
HpyF3I	CTNAG	5 cut(s)	65, 296, 459, 636, 798
HpySE526I	ACGT	2 cut(s)	183, 571
Hsp92II	CATG	1 cut(s)	166
Kzo9I	GATC	3 cut(s)	19, 560, 751
LmnI	GCTCC	1 cut(s)	439
LpnPI	CCDG	7 cut(s)	471, 537, 543, 549, 618, 675, 801
Lsp1109I	GCAGC	3 cut(s)	219, 247, 712
LweI	GCATC	1 cut(s)	144
MaeI	CTAG	2 cut(s)	107, 131
MaeII	ACGT	2 cut(s)	183, 571
MaeIII	GTNAC	2 cut(s)	302, 667
MalI	GATC	3 cut(s)	21, 562, 753
MbiI	CCGCTC	1 cut(s)	14
MboI	GATC	3 cut(s)	19, 560, 751
MboII	GAAGA	8 cut(s)	97, 185, 381, 524, 527, 530, 620, 832
MhlI	GDGCHC	1 cut(s)	779
MluCI	AATT	3 cut(s)	110, 330, 542
MlyI	GAGTC	1 cut(s)	472
MmeI	TCCRAC	1 cut(s)	291
MnlI	CCTC	9 cut(s)	15, 100, 169, 249, 370, 415, 447, 450, 507
MseI	TTAA	4 cut(s)	195, 314, 507, 841
MslI	CAYNNNNRTG	2 cut(s)	99, 368
MspA1I	CMGCKG	2 cut(s)	395, 725
MwoI	GCNNNNNNNGC	1 cut(s)	628
NdeII	GATC	3 cut(s)	19, 560, 751
NlaIII	CATG	1 cut(s)	166
NlaIV	GGNNCC	1 cut(s)	339
NmuCI	GTSAC	1 cut(s)	667
NspI	RCATGY	1 cut(s)	166
PceI	AGGCCT	1 cut(s)	129
PciI	ACATGT	1 cut(s)	162
PkrI	GCNGC	3 cut(s)	234, 237, 727
Ple19I	CGATCG	1 cut(s)	22
PleI	GAGTC	1 cut(s)	472
PpsI	GAGTC	1 cut(s)	472
PscI	ACATGT	1 cut(s)	162
Psp124BI	GAGCTC	1 cut(s)	779
Psp1406I	AACGTT	1 cut(s)	571
PspN4I	GGNNCC	1 cut(s)	339
PstI	CTGCAG	2 cut(s)	121, 237
PvuI	CGATCG	1 cut(s)	22
PvuII	CAGCTG	2 cut(s)	395, 725
RsaI	GTAC	1 cut(s)	105
RsaNI	GTAC	1 cut(s)	104
RseI	CAYNNNNRTG	2 cut(s)	99, 368
SacI	GAGCTC	1 cut(s)	779
SaqAI	TTAA	4 cut(s)	195, 314, 507, 841
SatI	GCNGC	3 cut(s)	233, 236, 726
Sau3AI	GATC	3 cut(s)	19, 560, 751
SchI	GAGTC	1 cut(s)	472
SduI	GDGCHC	1 cut(s)	779
SfaNI	GCATC	1 cut(s)	144
SfcI	CTRYAG	2 cut(s)	117, 233
SmiMI	CAYNNNNRTG	2 cut(s)	99, 368
SmlI	CTYRAG	1 cut(s)	246
SmoI	CTYRAG	1 cut(s)	246
Sse9I	AATT	3 cut(s)	110, 330, 542
SseBI	AGGCCT	1 cut(s)	129
SsiI	CCGC	1 cut(s)	12
SspI	AATATT	1 cut(s)	359
SspMI	CTAG	2 cut(s)	107, 131
SstI	GAGCTC	1 cut(s)	779
StuI	AGGCCT	1 cut(s)	129
StyI	CCWWGG	1 cut(s)	677
TaiI	ACGT	2 cut(s)	186, 574
TaqI	TCGA	2 cut(s)	18, 408
TasI	AATT	3 cut(s)	110, 330, 542
TatI	WGTACW	1 cut(s)	103
Tru1I	TTAA	4 cut(s)	195, 314, 507, 841
Tru9I	TTAA	4 cut(s)	195, 314, 507, 841
TscAI	CASTG	2 cut(s)	121, 562
TseFI	GTSAC	1 cut(s)	667
TseI	GCWGC	3 cut(s)	232, 235, 725
Tsp45I	GTSAC	1 cut(s)	667
TspDTI	ATGAA	1 cut(s)	807
TspGWI	ACGGA	2 cut(s)	330, 428
TspRI	CASTG	2 cut(s)	121, 562
XapI	RAATTY	2 cut(s)	110, 542
XceI	RCATGY	1 cut(s)	166
XspI	CTAG	2 cut(s)	107, 131

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.