Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0007333

Physical Location & Seq

Genomic Coordinates Forward (+)

71773829 .. 71776639

Gene Structure 2811 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ34166

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGGCTCATGAATATCCTCGCAGTTCAGGCTTTGAGCAGAGTTATCGTTGTTACCCTGTCTCGTTCATCGACAAGCAACATCTGGAAAAGGGTGATAAAATTATAATGCCTCCCTCAGCTCTCGATCGCCTCGCATCTATGCACGTGGACTACCCTATGTTGTTTGAACTTAACAATGCTACTGCTGGACGAGTTACTCATTGTGGGGTCTTGGAATTTGTTGCTGATGAGGGCCTCATATATGTACCATACTGGATGATGGAGAACATGCTCCTACAAGAGGGAGACATTGTTCAAGTGAAGAACAAAAGCCTGGTAAAGGGAACCTATGTGAAGTTGCAGCCCCACACCAAGGACTTCCTTGATATTTCAAACCCCAAAGCCATTTTGGAGACTACATTGAGGAGCTACTCTTGTTTAACCACTGGTGACACTATCATGGTTCCTTATAACAATAAGAAGTATTACATTAACATAGTTGAAGCAAAACCCTCATCTGCAATCAGTATCATTGAGACAGACTGTGAGGTTGATTTTGCCCCTCCTCTTGATTACGTGGAACCTGAAAAACCAACTCCGTCAACGTCATCTACTTTGCCAAAGAAGAGACCACAAGAAGCTGAAGAAGAACCAGTTCAAAAGGTTGCAAGATTCAATCCATTTACAGGTTCAGCAAGGCGATTGGATGGAAAGCCTTCGACGGAATCAGTTGCACCAGTTTCCTCTCCCATACTTAAGCAGCACCAACTGGAGGGTGAAAACGGAGCCAAGGATTCCAAGCCATCAACTTCTGCTTCACGCCAACGTTCTGGAAAGCTTGTGTTTGGTTCAAATTCCAACCAGCCCACAAAGGAAGCCCCAAAAGCTGCTCCAAAGAAACAAGAGTCATCTGAGAAGGCAGAAGAGGAAAAAGAGACAAAGTTCCAAGCATTCACAGGGAAGAAGTATTCTCTGAAAGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001817 GO:0001818 GO:0002682 GO:0002683 GO:0002697 GO:0002698 GO:0002831 GO:0002832 GO:0003674 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009966 GO:0009968 GO:0009987 GO:0010646 GO:0010648 GO:0012505 GO:0016020 GO:0019538 GO:0019899 GO:0019941 GO:0023051 GO:0023057 GO:0030163 GO:0031347 GO:0031348 GO:0031984 GO:0032101 GO:0032102 GO:0032479 GO:0032480 GO:0032991 GO:0034098 GO:0036501 GO:0039531 GO:0039532 GO:0039535 GO:0039536 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0043900 GO:0043901 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0045088 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050687 GO:0050688 GO:0050776 GO:0050789 GO:0050794 GO:0051117 GO:0051239 GO:0051241 GO:0051603 GO:0065007 GO:0071704 GO:0080134 GO:0098796 GO:0098827 GO:1901564 GO:1901565 GO:1901575 GO:1902531 GO:1902532

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

UFD1

Protein Analysis

320

Amino Acids

35.69

Weight (kDa)

7.02

Isoelectric Point (pI)

53.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UFD1_N1	PF03152	11 - 105	3.7e-40	Ubiquitin fusion degradation protein UFD1, N-terminal subdomain 1
UFD1_N2	PF24842	107 - 182	2.7e-37	Ubiquitin fusion degradation protein UFD1, N-terminal subdomain 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007333)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29070 AT2G29070 AT2G29070
fragaria_vesca	FvH4_3g36770 FvH4_3g36770
malus_domestica	MD03G1088700.v1.1 MD11G1097700.v1.1
prunus_persica	Prupe.6G073100_v2.0.a1 Prupe.6G073100_v2.0.a1
pyrus_communis	pycom03g07030 pycom11g08240
rosa_chinensis	RchiOBHm_Chr5g0065821
rosa_laevigata	RLG00000035819
rosa_multiflora	Rmu_sc0042868.1_g000003
rosa_roxburghii	Rroxscaffold_1G00015330
rosa_rugosa	Rorug05G0374000 Rorug05G0374000 Rorug05G0374000 Rorug05G0374000 Rorug05G0374000
rosa_samantha	Rh5AG432700 Rh5BG449000 Rh5CG471200 Rh5DG462500
rosa_wichuraiana	Rw5G040580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	104, 450
AclI	AACGTT	1 cut(s)	805
AcsI	RAATTY	2 cut(s)	215, 832
AcuI	CTGAAG	1 cut(s)	642
AcvI	CACGTG	1 cut(s)	145
AfaI	GTAC	1 cut(s)	246
AfiI	CCNNNNNNNGG	5 cut(s)	280, 319, 352, 665, 751
AflII	CTTAAG	1 cut(s)	734
AgsI	TTSAA	7 cut(s)	167, 296, 372, 482, 638, 655, 831
AjnI	CCWGG	1 cut(s)	312
AloI	GAACNNNNNNTCC	2 cut(s)	276, 308
AluBI	AGCT	5 cut(s)	119, 408, 620, 817, 866
AluI	AGCT	5 cut(s)	119, 408, 620, 817, 866
Alw26I	GTCTC	6 cut(s)	64, 279, 386, 509, 601, 908
AoxI	GGCC	1 cut(s)	232
ApeKI	GCWGC	3 cut(s)	340, 739, 866
ApoI	RAATTY	2 cut(s)	215, 832
Asp700I	GAANNNNTTC	2 cut(s)	633, 694
AspS9I	GGNCC	1 cut(s)	232
AsuHPI	GGTGA	3 cut(s)	104, 440, 767
BbrPI	CACGTG	1 cut(s)	145
BbvCI	CCTCAGC	1 cut(s)	115
BbvI	GCAGC	3 cut(s)	352, 751, 853
BccI	CCATC	3 cut(s)	253, 680, 790
BcgI	CGANNNNNNTGC	2 cut(s)	26, 60
BciT130I	CCWGG	1 cut(s)	314
BcoDI	GTCTC	6 cut(s)	64, 279, 386, 509, 601, 908
BfrI	CTTAAG	1 cut(s)	734
BisI	GCNGC	3 cut(s)	341, 740, 867
BlsI	GCNGC	3 cut(s)	342, 741, 868
Bme1390I	CCNGG	1 cut(s)	314
BmgT120I	GGNCC	1 cut(s)	232
BmiI	GGNNCC	4 cut(s)	325, 444, 561, 766
BmrFI	CCNGG	1 cut(s)	314
BmsI	GCATC	1 cut(s)	143
BpmI	CTGGAG	1 cut(s)	770
Bpu10I	CCTNAGC	1 cut(s)	115
BsaAI	YACGTR	2 cut(s)	145, 556
BsaI	GGTCTC	1 cut(s)	601
BsaJI	CCNNGG	2 cut(s)	351, 768
BsaXI	ACNNNNNCTCC	2 cut(s)	276, 306
Bsc4I	CCNNNNNNNGG	5 cut(s)	280, 319, 352, 665, 751
Bse1I	ACTGG	5 cut(s)	257, 430, 632, 716, 753
BseBI	CCWGG	1 cut(s)	314
BseDI	CCNNGG	2 cut(s)	351, 768
BseGI	GGATG	2 cut(s)	261, 691
BseLI	CCNNNNNNNGG	5 cut(s)	280, 319, 352, 665, 751
BseMII	CTCAG	2 cut(s)	129, 882
BseNI	ACTGG	5 cut(s)	257, 430, 632, 716, 753
BseRI	GAGGAG	2 cut(s)	418, 534
BseXI	GCAGC	3 cut(s)	352, 751, 853
Bsh1285I	CGRYCG	1 cut(s)	127
BshFI	GGCC	1 cut(s)	234
BsiEI	CGRYCG	1 cut(s)	127
BslI	CCNNNNNNNGG	5 cut(s)	280, 319, 352, 665, 751
BsmAI	GTCTC	6 cut(s)	64, 279, 386, 509, 601, 908
BsmI	GAATGC	1 cut(s)	929
BsnI	GGCC	1 cut(s)	234
Bso31I	GGTCTC	1 cut(s)	601
Bsp143I	GATC	1 cut(s)	124
BspANI	GGCC	1 cut(s)	234
BspCNI	CTCAG	2 cut(s)	128, 883
BspHI	TCATGA	1 cut(s)	7
BspLI	GGNNCC	4 cut(s)	325, 444, 561, 766
BspTI	CTTAAG	1 cut(s)	734
BspTNI	GGTCTC	1 cut(s)	601
BsrI	ACTGG	5 cut(s)	257, 430, 632, 716, 753
BssECI	CCNNGG	2 cut(s)	351, 768
BssMI	GATC	1 cut(s)	124
BssT1I	CCWWGG	2 cut(s)	351, 768
Bst2UI	CCWGG	1 cut(s)	314
Bst4CI	ACNGT	1 cut(s)	524
Bst6I	CTCTTC	2 cut(s)	599, 897
BstAFI	CTTAAG	1 cut(s)	734
BstBAI	YACGTR	2 cut(s)	145, 556
BstDEI	CTNAG	2 cut(s)	115, 891
BstENI	CCTNNNNNAGG	2 cut(s)	278, 317
BstF5I	GGATG	2 cut(s)	261, 691
BstKTI	GATC	1 cut(s)	127
BstMAI	GTCTC	6 cut(s)	64, 279, 386, 509, 601, 908
BstMBI	GATC	1 cut(s)	124
BstMCI	CGRYCG	1 cut(s)	127
BstMWI	GCNNNNNNNGC	2 cut(s)	27, 863
BstNI	CCWGG	1 cut(s)	314
BstNSI	RCATGY	1 cut(s)	271
BstSCI	CCNGG	1 cut(s)	312
BstV1I	GCAGC	3 cut(s)	352, 751, 853
BstXI	CCANNNNNNTGG	1 cut(s)	809
BsuRI	GGCC	1 cut(s)	234
BtsCI	GGATG	2 cut(s)	261, 691
BtsIMutI	CAGTG	1 cut(s)	423
CciI	TCATGA	1 cut(s)	7
Cfr13I	GGNCC	1 cut(s)	232
Csp6I	GTAC	1 cut(s)	245
CviAII	CATG	3 cut(s)	8, 268, 439
CviQI	GTAC	1 cut(s)	245
DdeI	CTNAG	2 cut(s)	115, 891
DpnI	GATC	1 cut(s)	126
DpnII	GATC	1 cut(s)	124
Eam1104I	CTCTTC	2 cut(s)	599, 897
EarI	CTCTTC	2 cut(s)	599, 897
Eco130I	CCWWGG	2 cut(s)	351, 768
Eco31I	GGTCTC	1 cut(s)	601
Eco57I	CTGAAG	1 cut(s)	642
Eco72I	CACGTG	1 cut(s)	145
EcoNI	CCTNNNNNAGG	2 cut(s)	278, 317
EcoO109I	RGGNCCY	1 cut(s)	232
EcoRII	CCWGG	1 cut(s)	312
EcoT14I	CCWWGG	2 cut(s)	351, 768
ErhI	CCWWGG	2 cut(s)	351, 768
FaeI	CATG	3 cut(s)	11, 271, 442
FatI	CATG	3 cut(s)	7, 267, 438
Fnu4HI	GCNGC	3 cut(s)	341, 740, 867
FokI	GGATG	2 cut(s)	268, 698
Fsp4HI	GCNGC	3 cut(s)	341, 740, 867
GluI	GCNGC	3 cut(s)	341, 740, 867
GsuI	CTGGAG	1 cut(s)	770
HaeIII	GGCC	1 cut(s)	234
Hin1II	CATG	3 cut(s)	11, 271, 442
HincII	GTYRAC	1 cut(s)	582
HindII	GTYRAC	1 cut(s)	582
HindIII	AAGCTT	1 cut(s)	815
HinfI	GANTC	4 cut(s)	651, 704, 773, 884
HphI	GGTGA	3 cut(s)	104, 440, 767
Hpy166II	GTNNAC	2 cut(s)	148, 582
Hpy188I	TCNGA	2 cut(s)	892, 954
Hpy188III	TCNNGA	5 cut(s)	8, 83, 122, 548, 810
Hpy8I	GTNNAC	2 cut(s)	148, 582
Hpy99I	CGWCG	1 cut(s)	703
HpyAV	CCTTC	2 cut(s)	705, 889
HpyCH4III	ACNGT	1 cut(s)	524
HpyCH4IV	ACGT	4 cut(s)	144, 555, 584, 805
HpyCH4V	TGCA	5 cut(s)	142, 340, 500, 647, 713
HpyF10VI	GCNNNNNNNGC	2 cut(s)	27, 863
HpyF3I	CTNAG	2 cut(s)	115, 891
HpySE526I	ACGT	4 cut(s)	144, 555, 584, 805
Hsp92II	CATG	3 cut(s)	11, 271, 442
Kzo9I	GATC	1 cut(s)	124
LmnI	GCTCC	4 cut(s)	276, 405, 764, 874
Lsp1109I	GCAGC	3 cut(s)	352, 751, 853
LweI	GCATC	1 cut(s)	143
MaeII	ACGT	4 cut(s)	144, 555, 584, 805
MaeIII	GTNAC	3 cut(s)	50, 193, 428
MalI	GATC	1 cut(s)	126
MboI	GATC	1 cut(s)	124
MboII	GAAGA	6 cut(s)	313, 616, 635, 638, 914, 952
MluCI	AATT	3 cut(s)	99, 215, 832
MlyI	GAGTC	1 cut(s)	893
MmeI	TCCRAC	1 cut(s)	861
MroXI	GAANNNNTTC	2 cut(s)	633, 694
MseI	TTAA	4 cut(s)	171, 419, 471, 735
MslI	CAYNNNNRTG	1 cut(s)	437
MspCI	CTTAAG	1 cut(s)	734
MspR9I	CCNGG	1 cut(s)	314
Mva1269I	GAATGC	1 cut(s)	929
MvaI	CCWGG	1 cut(s)	314
MwoI	GCNNNNNNNGC	2 cut(s)	27, 863
NdeII	GATC	1 cut(s)	124
NlaIII	CATG	3 cut(s)	11, 271, 442
NlaIV	GGNNCC	4 cut(s)	325, 444, 561, 766
NmuCI	GTSAC	1 cut(s)	428
NspI	RCATGY	1 cut(s)	271
PagI	TCATGA	1 cut(s)	7
PctI	GAATGC	1 cut(s)	929
PdmI	GAANNNNTTC	2 cut(s)	633, 694
PfeI	GAWTC	3 cut(s)	651, 704, 773
PkrI	GCNGC	3 cut(s)	342, 741, 868
Ple19I	CGATCG	1 cut(s)	127
PleI	GAGTC	1 cut(s)	892
PmaCI	CACGTG	1 cut(s)	145
PmlI	CACGTG	1 cut(s)	145
PpsI	GAGTC	1 cut(s)	892
Ppu21I	YACGTR	2 cut(s)	145, 556
PsiI	TTATAA	2 cut(s)	104, 450
Psp1406I	AACGTT	1 cut(s)	805
Psp6I	CCWGG	1 cut(s)	312
PspCI	CACGTG	1 cut(s)	145
PspGI	CCWGG	1 cut(s)	312
PspN4I	GGNNCC	4 cut(s)	325, 444, 561, 766
PspPI	GGNCC	1 cut(s)	232
PvuI	CGATCG	1 cut(s)	127
RsaI	GTAC	1 cut(s)	246
RsaNI	GTAC	1 cut(s)	245
RseI	CAYNNNNRTG	1 cut(s)	437
SaqAI	TTAA	4 cut(s)	171, 419, 471, 735
SatI	GCNGC	3 cut(s)	341, 740, 867
Sau3AI	GATC	1 cut(s)	124
Sau96I	GGNCC	1 cut(s)	232
SchI	GAGTC	1 cut(s)	893
ScrFI	CCNGG	1 cut(s)	314
SfaNI	GCATC	1 cut(s)	143
SmiMI	CAYNNNNRTG	1 cut(s)	437
SmlI	CTYRAG	1 cut(s)	734
SmoI	CTYRAG	1 cut(s)	734
Sse9I	AATT	3 cut(s)	99, 215, 832
StyD4I	CCNGG	1 cut(s)	312
StyI	CCWWGG	2 cut(s)	351, 768
TaaI	ACNGT	1 cut(s)	524
TaiI	ACGT	4 cut(s)	147, 558, 587, 808
TaqI	TCGA	3 cut(s)	69, 123, 698
TasI	AATT	3 cut(s)	99, 215, 832
TfiI	GAWTC	3 cut(s)	651, 704, 773
Tru1I	TTAA	4 cut(s)	171, 419, 471, 735
Tru9I	TTAA	4 cut(s)	171, 419, 471, 735
TscAI	CASTG	1 cut(s)	430
TseFI	GTSAC	1 cut(s)	428
TseI	GCWGC	3 cut(s)	340, 739, 866
Tsp45I	GTSAC	1 cut(s)	428
TspDTI	ATGAA	2 cut(s)	24, 55
TspGWI	ACGGA	3 cut(s)	567, 716, 777
TspRI	CASTG	1 cut(s)	430
Vha464I	CTTAAG	1 cut(s)	734
XagI	CCTNNNNNAGG	2 cut(s)	278, 317
XapI	RAATTY	2 cut(s)	215, 832
XceI	RCATGY	1 cut(s)	271
XcmI	CCANNNNNNNNNTGG	1 cut(s)	385
XmnI	GAANNNNTTC	2 cut(s)	633, 694

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.