Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0007333

Physical Location & Seq

Genomic Coordinates Reverse (-)

5583648 .. 5586308

Gene Structure 2661 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g07030.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1293 bp

ATGACTGTACCTATAAAAACTCGGAACGCACCCATCTCACATAAATCACTCTCTGCTCTGACCCAGCTAGCAAGAAAGAAACCCAGCACTTCCAATCCATCATCCATTACAATCGCAAAGGTGCCAATCAAAATCCACACTTTCTGTTCTAACACCATTAACAATTCAGCAACTTTTGGTTCTAATTTCTTCTGGGTATTCGGTTTTCAATCGTTTTGCTTGAAATCAAATAGTGGGTTTCTTATTCTTCTTCTTATCTTTGTTCCCTTTTTCTGTGAACAGAAATGGGATATCGGTAATATTTTGGCCAGTGGCAGCTTGTTGGACCCAGTGAATATGGCTTATGAAGACTTTCGCACTTCAGCGTTTGAGCAAAGTTACCGTTGTTACCCTGTCTCGTTTATTGAGAAGCCACATCTGGAGAAGGGTGATAAAAGTATGTTTATCTGCTTGACTACATCTTTGCAGATCGACTATCCTATGTTGTTTGAACTTAACAATCCTACTGTTGGACGAGCTACTCATTGTGGGGTTTTGGAATTTGTTGCTGATGAGGGTCTAATATATTTACCATACTGGATGATGCAGAACATGCTCCTTCAAGAGGGAGACATTTGTCAAGTAAAAAACAAAAGCCTAGTAAAGGGAACATATGTGAAGTTGCAGCCTCACACTACGGACTTCCTTGATATCTCAAACCCCAAAGCCATTTTGGAAACTACATTGAGGAGCTACTCGTGTTTAACCACTGGTGGTACTATCATGGTTCCTTATAACAATAAGCAGTATTACATTAACATAGTTGAAACAAAACCCTCCCCTGCAATCAGTATAATTGAGACGGACTGTGAGGTTGATTTCGCCCCTCCTCTTGATTATGTGGAACCTGTAAAACCTGCACCACCTACTTTGTCTAAGAAGAGACCACAAGAAGCTGAAGAAGTACAACCTGAAAAGATACCAAAATTCAATCCCTTCACTGGTTCAGCAAGACGATTGGATGGAAAACCGATGACAGAATCAGTTGCACCAGTTTCTGCTCCTATACTGAAGCAGCACCAACAGGAGAGTGAAAATGGAACCAAGGATTCAAAGTCATCGACTTGTGCTGCACGTAAATCTGGAAAGCTCGTGTTTGGTTCAAATGGTAACCAACCCACGAAAGAAACCCCAAAAGTTGCCCCAAAGAACAGCAAGCCAGAGCCATCTAAGAAGGTAGAACATACACCTCAGAAGGCAGAAGAGCCGAAGTTCCAAGCATTCACGGGAAAGAAGTATTCACTGAAAGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001817 GO:0001818 GO:0002682 GO:0002683 GO:0002697 GO:0002698 GO:0002831 GO:0002832 GO:0003674 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009966 GO:0009968 GO:0009987 GO:0010646 GO:0010648 GO:0012505 GO:0016020 GO:0019538 GO:0019899 GO:0019941 GO:0023051 GO:0023057 GO:0030163 GO:0031347 GO:0031348 GO:0031984 GO:0032101 GO:0032102 GO:0032479 GO:0032480 GO:0032991 GO:0034098 GO:0036501 GO:0039531 GO:0039532 GO:0039535 GO:0039536 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0043900 GO:0043901 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0045088 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050687 GO:0050688 GO:0050776 GO:0050789 GO:0050794 GO:0051117 GO:0051239 GO:0051241 GO:0051603 GO:0065007 GO:0071704 GO:0080134 GO:0098796 GO:0098827 GO:1901564 GO:1901565 GO:1901575 GO:1902531 GO:1902532

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

UFD1

Protein Analysis

431

Amino Acids

47.89

Weight (kDa)

8.95

Isoelectric Point (pI)

43.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007333)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29070 AT2G29070 AT2G29070
fragaria_vesca	FvH4_3g36770 FvH4_3g36770
malus_domestica	MD03G1088700.v1.1 MD11G1097700.v1.1
prunus_persica	Prupe.6G073100_v2.0.a1 Prupe.6G073100_v2.0.a1
pyrus_communis	pycom03g07030 pycom11g08240
rosa_chinensis	RchiOBHm_Chr5g0065821
rosa_laevigata	RLG00000035819
rosa_multiflora	Rmu_sc0042868.1_g000003
rosa_roxburghii	Rroxscaffold_1G00015330
rosa_rugosa	Rorug05G0374000 Rorug05G0374000 Rorug05G0374000 Rorug05G0374000 Rorug05G0374000
rosa_samantha	Rh5AG432700 Rh5BG449000 Rh5CG471200 Rh5DG462500
rosa_wichuraiana	Rw5G040580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	774
Acc36I	ACCTGC	1 cut(s)	904
AccB1I	GGYRCC	1 cut(s)	121
AcoI	YGGCCR	1 cut(s)	306
AcsI	RAATTY	2 cut(s)	539, 965
AcuI	CTGAAG	3 cut(s)	345, 957, 1070
AfaI	GTAC	3 cut(s)	9, 757, 945
AfiI	CCNNNNNNNGG	4 cut(s)	509, 604, 643, 980
AgsI	TTSAA	8 cut(s)	209, 223, 491, 602, 806, 970, 1092, 1143
AluBI	AGCT	6 cut(s)	67, 318, 518, 732, 935, 1129
AluI	AGCT	6 cut(s)	67, 318, 518, 732, 935, 1129
Alw26I	GTCTC	4 cut(s)	400, 603, 833, 916
AlwNI	CAGNNNCTG	1 cut(s)	1037
AoxI	GGCC	1 cut(s)	306
ApeKI	GCWGC	4 cut(s)	315, 664, 1054, 1109
ApoI	RAATTY	2 cut(s)	539, 965
ArsI	GACNNNNNNTTYG	2 cut(s)	445, 477
Asp700I	GAANNNNTTC	1 cut(s)	351
AspS9I	GGNCC	1 cut(s)	325
AsuHPI	GGTGA	1 cut(s)	440
AsuNHI	GCTAGC	1 cut(s)	67
AvaII	GGWCC	1 cut(s)	325
BalI	TGGCCA	1 cut(s)	308
BanI	GGYRCC	1 cut(s)	121
BauI	CACGAG	2 cut(s)	736, 1130
BbsI	GAAGAC	1 cut(s)	354
BbvI	GCAGC	4 cut(s)	327, 676, 1066, 1096
BccI	CCATC	4 cut(s)	41, 106, 995, 1213
BcoDI	GTCTC	4 cut(s)	400, 603, 833, 916
BfaI	CTAG	2 cut(s)	68, 638
BfuAI	ACCTGC	1 cut(s)	904
BisI	GCNGC	4 cut(s)	316, 665, 1055, 1110
BlsI	GCNGC	4 cut(s)	317, 666, 1056, 1111
Bme18I	GGWCC	1 cut(s)	325
BmgT120I	GGNCC	1 cut(s)	325
BmiI	GGNNCC	5 cut(s)	123, 327, 768, 885, 1081
BmrI	ACTGGG	1 cut(s)	323
BmsI	GCATC	1 cut(s)	573
BmtI	GCTAGC	1 cut(s)	71
BmuI	ACTGGG	1 cut(s)	323
BoxI	GACNNNNGTC	1 cut(s)	615
BpiI	GAAGAC	1 cut(s)	354
BpmI	CTGGAG	1 cut(s)	440
BsaAI	YACGTR	1 cut(s)	1115
BsaI	GGTCTC	1 cut(s)	916
BsaJI	CCNNGG	1 cut(s)	1083
Bsc4I	CCNNNNNNNGG	4 cut(s)	509, 604, 643, 980
Bse1I	ACTGG	6 cut(s)	309, 329, 581, 754, 985, 1031
BseDI	CCNNGG	1 cut(s)	1083
BseGI	GGATG	3 cut(s)	101, 585, 1006
BseLI	CCNNNNNNNGG	4 cut(s)	509, 604, 643, 980
BseMII	CTCAG	1 cut(s)	1244
BseNI	ACTGG	6 cut(s)	309, 329, 581, 754, 985, 1031
BseRI	GAGGAG	2 cut(s)	742, 858
BseXI	GCAGC	4 cut(s)	327, 676, 1066, 1096
BseYI	CCCAGC	2 cut(s)	63, 83
BsgI	GTGCAG	2 cut(s)	882, 1095
BshFI	GGCC	1 cut(s)	308
BshNI	GGYRCC	1 cut(s)	121
BslI	CCNNNNNNNGG	4 cut(s)	509, 604, 643, 980
BsmAI	GTCTC	4 cut(s)	400, 603, 833, 916
BsmBI	CGTCTC	1 cut(s)	833
BsmI	GAATGC	1 cut(s)	1259
BsnI	GGCC	1 cut(s)	308
Bso31I	GGTCTC	1 cut(s)	916
Bsp143I	GATC	1 cut(s)	468
BspANI	GGCC	1 cut(s)	308
BspCNI	CTCAG	1 cut(s)	1243
BspLI	GGNNCC	5 cut(s)	123, 327, 768, 885, 1081
BspMI	ACCTGC	1 cut(s)	904
BspOI	GCTAGC	1 cut(s)	71
BspQI	GCTCTTC	1 cut(s)	1236
BspT107I	GGYRCC	1 cut(s)	121
BspTNI	GGTCTC	1 cut(s)	916
BsrI	ACTGG	6 cut(s)	309, 329, 581, 754, 985, 1031
BssECI	CCNNGG	1 cut(s)	1083
BssMI	GATC	1 cut(s)	468
BssSI	CACGAG	2 cut(s)	736, 1130
BssT1I	CCWWGG	1 cut(s)	1083
Bst2BI	CACGAG	2 cut(s)	736, 1130
Bst4CI	ACNGT	4 cut(s)	7, 383, 508, 848
Bst6I	CTCTTC	2 cut(s)	914, 1236
BstAPI	GCANNNNNTGC	1 cut(s)	592
BstBAI	YACGTR	1 cut(s)	1115
BstC8I	GCNNGC	2 cut(s)	69, 1196
BstDEI	CTNAG	3 cut(s)	915, 1209, 1230
BstEII	GGTNACC	1 cut(s)	1148
BstENI	CCTNNNNNAGG	2 cut(s)	602, 641
BstF5I	GGATG	3 cut(s)	101, 585, 1006
BstKTI	GATC	1 cut(s)	471
BstMAI	GTCTC	4 cut(s)	400, 603, 833, 916
BstMBI	GATC	1 cut(s)	468
BstMWI	GCNNNNNNNGC	1 cut(s)	592
BstNSI	RCATGY	1 cut(s)	595
BstPAI	GACNNNNGTC	1 cut(s)	615
BstPI	GGTNACC	1 cut(s)	1148
BstV1I	GCAGC	4 cut(s)	327, 676, 1066, 1096
BstV2I	GAAGAC	1 cut(s)	354
BsuRI	GGCC	1 cut(s)	308
BtsCI	GGATG	3 cut(s)	101, 585, 1006
BtsIMutI	CAGTG	5 cut(s)	316, 336, 747, 978, 1280
BveI	ACCTGC	1 cut(s)	904
Cac8I	GCNNGC	2 cut(s)	69, 1196
CaiI	CAGNNNCTG	1 cut(s)	1037
Cfr13I	GGNCC	1 cut(s)	325
Csp6I	GTAC	3 cut(s)	8, 756, 944
CspCI	CAANNNNNGTGG	2 cut(s)	891, 926
CviAII	CATG	2 cut(s)	592, 763
CviQI	GTAC	3 cut(s)	8, 756, 944
DdeI	CTNAG	3 cut(s)	915, 1209, 1230
DpnI	GATC	1 cut(s)	470
DpnII	GATC	1 cut(s)	468
EaeI	YGGCCR	1 cut(s)	306
Eam1104I	CTCTTC	2 cut(s)	914, 1236
EarI	CTCTTC	2 cut(s)	914, 1236
Eco130I	CCWWGG	1 cut(s)	1083
Eco31I	GGTCTC	1 cut(s)	916
Eco32I	GATATC	2 cut(s)	292, 691
Eco47I	GGWCC	1 cut(s)	325
Eco57I	CTGAAG	3 cut(s)	345, 957, 1070
Eco91I	GGTNACC	1 cut(s)	1148
EcoNI	CCTNNNNNAGG	2 cut(s)	602, 641
EcoO65I	GGTNACC	1 cut(s)	1148
EcoRV	GATATC	2 cut(s)	292, 691
EcoT14I	CCWWGG	1 cut(s)	1083
ErhI	CCWWGG	1 cut(s)	1083
Esp3I	CGTCTC	1 cut(s)	833
FaeI	CATG	2 cut(s)	595, 766
FatI	CATG	2 cut(s)	591, 762
FauNDI	CATATG	1 cut(s)	652
Fnu4HI	GCNGC	4 cut(s)	316, 665, 1055, 1110
FokI	GGATG	3 cut(s)	88, 592, 1013
Fsp4HI	GCNGC	4 cut(s)	316, 665, 1055, 1110
FspBI	CTAG	2 cut(s)	68, 638
GluI	GCNGC	4 cut(s)	316, 665, 1055, 1110
GsaI	CCCAGC	2 cut(s)	67, 87
GsuI	CTGGAG	1 cut(s)	440
HaeIII	GGCC	1 cut(s)	308
Hin1II	CATG	2 cut(s)	595, 766
HinfI	GANTC	2 cut(s)	1019, 1088
HphI	GGTGA	1 cut(s)	440
Hpy166II	GTNNAC	1 cut(s)	278
Hpy188I	TCNGA	3 cut(s)	24, 60, 1233
Hpy188III	TCNNGA	4 cut(s)	419, 602, 872, 1122
Hpy8I	GTNNAC	1 cut(s)	278
HpyAV	CCTTC	5 cut(s)	418, 608, 985, 1207, 1228
HpyCH4III	ACNGT	4 cut(s)	7, 383, 508, 848
HpyCH4IV	ACGT	1 cut(s)	1114
HpyCH4V	TGCA	7 cut(s)	466, 586, 664, 824, 899, 1028, 1112
HpyF10VI	GCNNNNNNNGC	1 cut(s)	592
HpyF3I	CTNAG	3 cut(s)	915, 1209, 1230
HpySE526I	ACGT	1 cut(s)	1114
Hsp92II	CATG	2 cut(s)	595, 766
Kzo9I	GATC	1 cut(s)	468
LguI	GCTCTTC	1 cut(s)	1236
LmnI	GCTCC	3 cut(s)	600, 729, 1045
Lsp1109I	GCAGC	4 cut(s)	327, 676, 1066, 1096
LweI	GCATC	1 cut(s)	573
MaeI	CTAG	2 cut(s)	68, 638
MaeII	ACGT	1 cut(s)	1114
MaeIII	GTNAC	3 cut(s)	377, 386, 1148
MalI	GATC	1 cut(s)	470
MboI	GATC	1 cut(s)	468
MboII	GAAGA	7 cut(s)	181, 239, 242, 359, 931, 950, 1253
MlsI	TGGCCA	1 cut(s)	308
MluCI	AATT	5 cut(s)	163, 184, 539, 834, 965
MluNI	TGGCCA	1 cut(s)	308
MmeI	TCCRAC	2 cut(s)	303, 490
MnlI	CCTC	9 cut(s)	547, 598, 678, 720, 826, 844, 876, 879, 1239
Mox20I	TGGCCA	1 cut(s)	308
MroXI	GAANNNNTTC	1 cut(s)	351
MscI	TGGCCA	1 cut(s)	308
MseI	TTAA	4 cut(s)	159, 495, 743, 795
Msp20I	TGGCCA	1 cut(s)	308
Mva1269I	GAATGC	1 cut(s)	1259
MwoI	GCNNNNNNNGC	1 cut(s)	592
NdeI	CATATG	1 cut(s)	652
NdeII	GATC	1 cut(s)	468
NheI	GCTAGC	1 cut(s)	67
NlaIII	CATG	2 cut(s)	595, 766
NlaIV	GGNNCC	5 cut(s)	123, 327, 768, 885, 1081
NspI	RCATGY	1 cut(s)	595
PciSI	GCTCTTC	1 cut(s)	1236
PctI	GAATGC	1 cut(s)	1259
PdmI	GAANNNNTTC	1 cut(s)	351
PfeI	GAWTC	2 cut(s)	1019, 1088
PkrI	GCNGC	4 cut(s)	317, 666, 1056, 1111
Ppu21I	YACGTR	1 cut(s)	1115
PshAI	GACNNNNGTC	1 cut(s)	615
PsiI	TTATAA	1 cut(s)	774
PspEI	GGTNACC	1 cut(s)	1148
PspFI	CCCAGC	2 cut(s)	63, 83
PspN4I	GGNNCC	5 cut(s)	123, 327, 768, 885, 1081
PspPI	GGNCC	1 cut(s)	325
PstNI	CAGNNNCTG	1 cut(s)	1037
RsaI	GTAC	3 cut(s)	9, 757, 945
RsaNI	GTAC	3 cut(s)	8, 756, 944
SapI	GCTCTTC	1 cut(s)	1236
SaqAI	TTAA	4 cut(s)	159, 495, 743, 795
SatI	GCNGC	4 cut(s)	316, 665, 1055, 1110
Sau3AI	GATC	1 cut(s)	468
Sau96I	GGNCC	1 cut(s)	325
SfaNI	GCATC	1 cut(s)	573
SinI	GGWCC	1 cut(s)	325
Sse9I	AATT	5 cut(s)	163, 184, 539, 834, 965
SspI	AATATT	1 cut(s)	301
SspMI	CTAG	2 cut(s)	68, 638
StyI	CCWWGG	1 cut(s)	1083
TaaI	ACNGT	4 cut(s)	7, 383, 508, 848
TaiI	ACGT	1 cut(s)	1117
TaqI	TCGA	2 cut(s)	471, 1100
TasI	AATT	5 cut(s)	163, 184, 539, 834, 965
TatI	WGTACW	1 cut(s)	943
TfiI	GAWTC	2 cut(s)	1019, 1088
Tru1I	TTAA	4 cut(s)	159, 495, 743, 795
Tru9I	TTAA	4 cut(s)	159, 495, 743, 795
TscAI	CASTG	5 cut(s)	316, 336, 754, 985, 1287
TseI	GCWGC	4 cut(s)	315, 664, 1054, 1109
TspDTI	ATGAA	1 cut(s)	360
TspGWI	ACGGA	2 cut(s)	692, 857
TspRI	CASTG	5 cut(s)	316, 336, 754, 985, 1287
VpaK11BI	GGWCC	1 cut(s)	325
XagI	CCTNNNNNAGG	2 cut(s)	602, 641
XapI	RAATTY	2 cut(s)	539, 965
XceI	RCATGY	1 cut(s)	595
XcmI	CCANNNNNNNNNTGG	1 cut(s)	709
XmnI	GAANNNNTTC	1 cut(s)	351
XspI	CTAG	2 cut(s)	68, 638

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.