Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0007333

Physical Location & Seq

Genomic Coordinates Reverse (-)

4989805 .. 4992807

Gene Structure 3003 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G073100.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGGCTCATGAAAACTATCGCATTTCTGCTTTTGAGCAGAGTTATCGTTGTTACCCTGTCTCGTTTATTGACAAGTCACATCTGGAAAAGGGTGATAAAATTATAATGCCTCCCTCAGCTCTTGACCGCCTCGCATCTTTACAGATCGACTACCCTATGTTGTTCGAACTTAACAATCCTACTGTTGACCGAGTTACTCATTGTGGGGTTTTGGAATTTGTTGCTGATGAGGGCCTAATCTATTTACCTTACTGGATGATGGAGAACATGCTCCTTCAAGAGGGAGACATTTGTCAAGTGAAAAACAAAAGCCTTGTAAAGGGAACATATGTGAAGTTGCAGCCCCACACCAAGGACTTTCTTGATATCTCAAATCCCAAAGCCATTTTGGAGACTACATTGAGGAGCTACTCTTGTTTAACCACTGGTGACACTATCATGGTTCCTTATAACAATAAGAAGTATTACATTAACATAGTTGAAACAAAACCCTCCTCTGCAATCAGTATAATTGAGACGGACTGTGAGGTTGATTTTGCCCCGCCTCTTGATTATGTGGAACCCGAGAAACCAGCACCTATTACTTCGTCAAAGAAGAGACTGCTAGAAGCCGAAGAAGAACCACCTGAAAAGATAGCAAAATTCAGTCCCTTTACTGGTTCAGGAAAACGATTGGATGGGAAACCCTTGACACAATCAATTGCACAAGTTTCCTCTCCCATACTCAAGCAGCACCAACTGAAGAGTGAAAATGGAACCAAGAGTTCGAAGTCGTCAACTTGTGCTGCACGTCAACACTCTGGAAAGCTTGTGTTTGGTTCAAATGTCAACCAGCCCACAAATGAAACCCCAAAAGTTGCCCCAAAGAACAGCAGGCAAGAGCCTTCTCAGAAGGCAGAAGATCCTTCTCAAAAGACAGATGAGCCAAAGTTCCAAGCATTCACGGGGAAGAAGTATTCACTGAAAGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001817 GO:0001818 GO:0002682 GO:0002683 GO:0002697 GO:0002698 GO:0002831 GO:0002832 GO:0003674 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009966 GO:0009968 GO:0009987 GO:0010646 GO:0010648 GO:0012505 GO:0016020 GO:0019538 GO:0019899 GO:0019941 GO:0023051 GO:0023057 GO:0030163 GO:0031347 GO:0031348 GO:0031984 GO:0032101 GO:0032102 GO:0032479 GO:0032480 GO:0032991 GO:0034098 GO:0036501 GO:0039531 GO:0039532 GO:0039535 GO:0039536 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0043900 GO:0043901 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0045088 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050687 GO:0050688 GO:0050776 GO:0050789 GO:0050794 GO:0051117 GO:0051239 GO:0051241 GO:0051603 GO:0065007 GO:0071704 GO:0080134 GO:0098796 GO:0098827 GO:1901564 GO:1901565 GO:1901575 GO:1902531 GO:1902532

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

UFD1

Protein Analysis

324

Amino Acids

36.2

Weight (kDa)

7.57

Isoelectric Point (pI)

43.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007333)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29070 AT2G29070 AT2G29070
fragaria_vesca	FvH4_3g36770 FvH4_3g36770
malus_domestica	MD03G1088700.v1.1 MD11G1097700.v1.1
prunus_persica	Prupe.6G073100_v2.0.a1 Prupe.6G073100_v2.0.a1
pyrus_communis	pycom03g07030 pycom11g08240
rosa_chinensis	RchiOBHm_Chr5g0065821
rosa_laevigata	RLG00000035819
rosa_multiflora	Rmu_sc0042868.1_g000003
rosa_roxburghii	Rroxscaffold_1G00015330
rosa_rugosa	Rorug05G0374000 Rorug05G0374000 Rorug05G0374000 Rorug05G0374000 Rorug05G0374000
rosa_samantha	Rh5AG432700 Rh5BG449000 Rh5CG471200 Rh5DG462500
rosa_wichuraiana	Rw5G040580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	104, 450
AciI	CCGC	2 cut(s)	127, 542
AclWI	GGATC	1 cut(s)	896
AcsI	RAATTY	2 cut(s)	215, 641
AcuI	CTGAAG	1 cut(s)	761
AfiI	CCNNNNNNNGG	4 cut(s)	280, 319, 352, 656
AgsI	TTSAA	3 cut(s)	278, 482, 822
AjiI	CACGTC	1 cut(s)	791
AluBI	AGCT	3 cut(s)	119, 408, 808
AluI	AGCT	3 cut(s)	119, 408, 808
Alw26I	GTCTC	5 cut(s)	64, 279, 386, 509, 592
AlwI	GGATC	1 cut(s)	896
Ama87I	CYCGRG	1 cut(s)	563
AoxI	GGCC	1 cut(s)	232
ApeKI	GCWGC	3 cut(s)	340, 730, 785
ApoI	RAATTY	2 cut(s)	215, 641
AspS9I	GGNCC	1 cut(s)	232
AsuHPI	GGTGA	2 cut(s)	104, 440
AsuII	TTCGAA	2 cut(s)	165, 767
AvaI	CYCGRG	1 cut(s)	563
BbvCI	CCTCAGC	1 cut(s)	115
BbvI	GCAGC	3 cut(s)	352, 742, 772
BccI	CCATC	2 cut(s)	253, 671
BcgI	CGANNNNNNTGC	2 cut(s)	26, 60
BcoDI	GTCTC	5 cut(s)	64, 279, 386, 509, 592
BfaI	CTAG	1 cut(s)	605
BisI	GCNGC	3 cut(s)	341, 731, 786
BlsI	GCNGC	3 cut(s)	342, 732, 787
BmeT110I	CYCGRG	1 cut(s)	563
BmgBI	CACGTC	1 cut(s)	791
BmgT120I	GGNCC	1 cut(s)	232
BmiI	GGNNCC	3 cut(s)	444, 561, 757
BmsI	GCATC	1 cut(s)	143
BoxI	GACNNNNGTC	1 cut(s)	291
Bpu10I	CCTNAGC	1 cut(s)	115
Bpu14I	TTCGAA	2 cut(s)	165, 767
BpuEI	CTTGAG	1 cut(s)	710
BsaJI	CCNNGG	1 cut(s)	351
Bsc4I	CCNNNNNNNGG	4 cut(s)	280, 319, 352, 656
Bse1I	ACTGG	3 cut(s)	257, 430, 661
BseDI	CCNNGG	1 cut(s)	351
BseGI	GGATG	2 cut(s)	261, 682
BseLI	CCNNNNNNNGG	4 cut(s)	280, 319, 352, 656
BseMII	CTCAG	2 cut(s)	129, 902
BseNI	ACTGG	3 cut(s)	257, 430, 661
BseRI	GAGGAG	2 cut(s)	418, 484
BseXI	GCAGC	3 cut(s)	352, 742, 772
BsgI	GTGCAG	1 cut(s)	771
BshFI	GGCC	1 cut(s)	234
BsiHKCI	CYCGRG	1 cut(s)	563
BslFI	GGGAC	1 cut(s)	633
BslI	CCNNNNNNNGG	4 cut(s)	280, 319, 352, 656
BsmAI	GTCTC	5 cut(s)	64, 279, 386, 509, 592
BsmBI	CGTCTC	1 cut(s)	509
BsmFI	GGGAC	1 cut(s)	633
BsmI	GAATGC	1 cut(s)	938
BsnI	GGCC	1 cut(s)	234
BsoBI	CYCGRG	1 cut(s)	563
Bsp119I	TTCGAA	2 cut(s)	165, 767
Bsp143I	GATC	2 cut(s)	144, 901
BspACI	CCGC	2 cut(s)	127, 542
BspANI	GGCC	1 cut(s)	234
BspCNI	CTCAG	2 cut(s)	128, 901
BspHI	TCATGA	1 cut(s)	7
BspLI	GGNNCC	3 cut(s)	444, 561, 757
BspPI	GGATC	1 cut(s)	896
BspT104I	TTCGAA	2 cut(s)	165, 767
BsrI	ACTGG	3 cut(s)	257, 430, 661
BssECI	CCNNGG	1 cut(s)	351
BssMI	GATC	2 cut(s)	144, 901
BssT1I	CCWWGG	1 cut(s)	351
Bst4CI	ACNGT	2 cut(s)	184, 524
Bst6I	CTCTTC	2 cut(s)	590, 737
BstBI	TTCGAA	2 cut(s)	165, 767
BstC8I	GCNNGC	1 cut(s)	875
BstDEI	CTNAG	2 cut(s)	115, 888
BstENI	CCTNNNNNAGG	2 cut(s)	278, 317
BstF5I	GGATG	2 cut(s)	261, 682
BstKTI	GATC	2 cut(s)	147, 904
BstMAI	GTCTC	5 cut(s)	64, 279, 386, 509, 592
BstMBI	GATC	2 cut(s)	144, 901
BstNSI	RCATGY	1 cut(s)	271
BstPAI	GACNNNNGTC	1 cut(s)	291
BstV1I	GCAGC	3 cut(s)	352, 742, 772
BstX2I	RGATCY	1 cut(s)	901
BstYI	RGATCY	1 cut(s)	901
BsuRI	GGCC	1 cut(s)	234
BtrI	CACGTC	1 cut(s)	791
BtsCI	GGATG	2 cut(s)	261, 682
BtsIMutI	CAGTG	2 cut(s)	423, 959
Cac8I	GCNNGC	1 cut(s)	875
CciI	TCATGA	1 cut(s)	7
Cfr13I	GGNCC	1 cut(s)	232
CviAII	CATG	3 cut(s)	8, 268, 439
DdeI	CTNAG	2 cut(s)	115, 888
DpnI	GATC	2 cut(s)	146, 903
DpnII	GATC	2 cut(s)	144, 901
Eam1104I	CTCTTC	2 cut(s)	590, 737
EarI	CTCTTC	2 cut(s)	590, 737
Eco130I	CCWWGG	1 cut(s)	351
Eco32I	GATATC	1 cut(s)	367
Eco57I	CTGAAG	1 cut(s)	761
Eco88I	CYCGRG	1 cut(s)	563
EcoNI	CCTNNNNNAGG	2 cut(s)	278, 317
EcoO109I	RGGNCCY	1 cut(s)	232
EcoRV	GATATC	1 cut(s)	367
EcoT14I	CCWWGG	1 cut(s)	351
ErhI	CCWWGG	1 cut(s)	351
Esp3I	CGTCTC	1 cut(s)	509
FaeI	CATG	3 cut(s)	11, 271, 442
FaqI	GGGAC	1 cut(s)	633
FatI	CATG	3 cut(s)	7, 267, 438
FauI	CCCGC	1 cut(s)	549
FauNDI	CATATG	1 cut(s)	328
Fnu4HI	GCNGC	3 cut(s)	341, 731, 786
FokI	GGATG	2 cut(s)	268, 689
Fsp4HI	GCNGC	3 cut(s)	341, 731, 786
FspBI	CTAG	1 cut(s)	605
GluI	GCNGC	3 cut(s)	341, 731, 786
HaeIII	GGCC	1 cut(s)	234
Hin1II	CATG	3 cut(s)	11, 271, 442
HincII	GTYRAC	4 cut(s)	187, 777, 794, 829
HindII	GTYRAC	4 cut(s)	187, 777, 794, 829
HindIII	AAGCTT	1 cut(s)	806
HphI	GGTGA	2 cut(s)	104, 440
Hpy166II	GTNNAC	4 cut(s)	187, 777, 794, 829
Hpy188I	TCNGA	1 cut(s)	891
Hpy188III	TCNNGA	8 cut(s)	8, 83, 122, 278, 362, 548, 663, 801
Hpy8I	GTNNAC	4 cut(s)	187, 777, 794, 829
HpyAV	CCTTC	4 cut(s)	284, 886, 894, 915
HpyCH4III	ACNGT	2 cut(s)	184, 524
HpyCH4IV	ACGT	1 cut(s)	790
HpyCH4V	TGCA	4 cut(s)	340, 500, 704, 788
HpyF3I	CTNAG	2 cut(s)	115, 888
HpySE526I	ACGT	1 cut(s)	790
Hsp92II	CATG	3 cut(s)	11, 271, 442
Kzo9I	GATC	2 cut(s)	144, 901
LmnI	GCTCC	2 cut(s)	276, 405
Lsp1109I	GCAGC	3 cut(s)	352, 742, 772
LweI	GCATC	1 cut(s)	143
MaeI	CTAG	1 cut(s)	605
MaeII	ACGT	1 cut(s)	790
MaeIII	GTNAC	4 cut(s)	50, 75, 193, 428
MalI	GATC	2 cut(s)	146, 903
MboI	GATC	2 cut(s)	144, 901
MboII	GAAGA	6 cut(s)	607, 626, 629, 754, 911, 961
MfeI	CAATTG	1 cut(s)	699
MflI	RGATCY	1 cut(s)	901
MluCI	AATT	5 cut(s)	99, 215, 510, 641, 699
MseI	TTAA	3 cut(s)	171, 419, 471
MslI	CAYNNNNRTG	1 cut(s)	437
MunI	CAATTG	1 cut(s)	699
Mva1269I	GAATGC	1 cut(s)	938
NdeI	CATATG	1 cut(s)	328
NdeII	GATC	2 cut(s)	144, 901
NlaIII	CATG	3 cut(s)	11, 271, 442
NlaIV	GGNNCC	3 cut(s)	444, 561, 757
NmuCI	GTSAC	2 cut(s)	75, 428
NspI	RCATGY	1 cut(s)	271
NspV	TTCGAA	2 cut(s)	165, 767
PagI	TCATGA	1 cut(s)	7
PctI	GAATGC	1 cut(s)	938
PkrI	GCNGC	3 cut(s)	342, 732, 787
PshAI	GACNNNNGTC	1 cut(s)	291
PsiI	TTATAA	2 cut(s)	104, 450
PspN4I	GGNNCC	3 cut(s)	444, 561, 757
PspPI	GGNCC	1 cut(s)	232
PsuI	RGATCY	1 cut(s)	901
RseI	CAYNNNNRTG	1 cut(s)	437
SaqAI	TTAA	3 cut(s)	171, 419, 471
SatI	GCNGC	3 cut(s)	341, 731, 786
Sau3AI	GATC	2 cut(s)	144, 901
Sau96I	GGNCC	1 cut(s)	232
SetI	ASST	8 cut(s)	121, 250, 410, 531, 580, 628, 793, 810
SfaNI	GCATC	1 cut(s)	143
SfuI	TTCGAA	2 cut(s)	165, 767
SmiMI	CAYNNNNRTG	1 cut(s)	437
SmlI	CTYRAG	1 cut(s)	725
SmoI	CTYRAG	1 cut(s)	725
Sse9I	AATT	5 cut(s)	99, 215, 510, 641, 699
SsiI	CCGC	2 cut(s)	127, 542
SspMI	CTAG	1 cut(s)	605
StyI	CCWWGG	1 cut(s)	351
TaaI	ACNGT	2 cut(s)	184, 524
TaiI	ACGT	1 cut(s)	793
TaqI	TCGA	3 cut(s)	147, 165, 767
TaqII	GACCGA	1 cut(s)	204
TasI	AATT	5 cut(s)	99, 215, 510, 641, 699
Tru1I	TTAA	3 cut(s)	171, 419, 471
Tru9I	TTAA	3 cut(s)	171, 419, 471
TscAI	CASTG	2 cut(s)	430, 966
TseFI	GTSAC	2 cut(s)	75, 428
TseI	GCWGC	3 cut(s)	340, 730, 785
Tsp45I	GTSAC	2 cut(s)	75, 428
TspDTI	ATGAA	2 cut(s)	24, 858
TspGWI	ACGGA	1 cut(s)	533
TspRI	CASTG	2 cut(s)	430, 966
XagI	CCTNNNNNAGG	2 cut(s)	278, 317
XapI	RAATTY	2 cut(s)	215, 641
XceI	RCATGY	1 cut(s)	271
XcmI	CCANNNNNNNNNTGG	1 cut(s)	385
XspI	CTAG	1 cut(s)	605

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.