Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0007333

Physical Location & Seq

Genomic Coordinates Forward (+)

72135614 .. 72137699

Gene Structure 2086 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000035819

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGGCTCATGAATATCCCCGCAGTTCAGGCTTTGAGCAGAGTTATCGTTGTTACCCTGTCTCGTTCATCGACAAGCAACATCTGGAAAAGGGTGATAAAACATCTATGCACGTGGACTACCCTATGTTGTTTGAACTTAACAATGCTACTGCTGGACGAGTTACTCATTGTGGGGTCTTGGAATTTGTTGCTGATGAGGGCCTCATATATGTACCATACTGGATGATGGAGAACATGCTCCTACAAGAGGGAGACATTGTTCAAGTGAAGAACAAAAGCCTGGTAAAGGGAACCTATGTGAAGTTGCAGCCCCACACCAAGGACTTCCTTGATATTTCAAACCCCAAAGCCATTTTGGAGACTACATTGAGGAGCTACTCTTGTTTGACCACTGGTGACACTATCATGGTTCCTTATAACAATAAGAAGTATTACATTAACATAGTTGAAGCAAAACCCTCATCTGCAATCAGTATCATTGAGACAGACTGTGAGGTTGATTTTGCCCCTCCTCTTGATTATGTGGAACCTGAAAAACCAGCTCCATCGACTTCATCTACTTTGCCAAAGAAGAGACCACAAGAAGCTGAAGAAGAACCAGTTCAAAAGGTTGCAAGGTTCAATCCATTTACAGGTTCAGCAAGGCGATTGGATGGAAAGCCTTCGACGGAATCAGTTGCACCAGTTTCCTCTCCCATACTTAAGCAGCACCAATTGGAGAGTGAAAACGGAGCCAAGGATTCCAAGCCATCAACTTCTGCTTCACGCCAACGTTCTGGAAAGCTTGTGTTTGGTTCAAATTCCAACCCACCCACAAAGGAAGCCCCAAAAGCTGCTCCAAAGAAACAAGAGTCATCTGAGAAGGCAGAAGAGGAAAAAGAGACAAAGTTCCAAGCATTCACAGGGAAGAAGTATTCTCTGAAAGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001817 GO:0001818 GO:0002682 GO:0002683 GO:0002697 GO:0002698 GO:0002831 GO:0002832 GO:0003674 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009966 GO:0009968 GO:0009987 GO:0010646 GO:0010648 GO:0012505 GO:0016020 GO:0019538 GO:0019899 GO:0019941 GO:0023051 GO:0023057 GO:0030163 GO:0031347 GO:0031348 GO:0031984 GO:0032101 GO:0032102 GO:0032479 GO:0032480 GO:0032991 GO:0034098 GO:0036501 GO:0039531 GO:0039532 GO:0039535 GO:0039536 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0043900 GO:0043901 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0045088 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050687 GO:0050688 GO:0050776 GO:0050789 GO:0050794 GO:0051117 GO:0051239 GO:0051241 GO:0051603 GO:0065007 GO:0071704 GO:0080134 GO:0098796 GO:0098827 GO:1901564 GO:1901565 GO:1901575 GO:1902531 GO:1902532

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

UFD1

Protein Analysis

310

Amino Acids

34.48

Weight (kDa)

7.02

Isoelectric Point (pI)

55.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UFD1_N1	PF03152	11 - 94	2.2e-26	Ubiquitin fusion degradation protein UFD1, N-terminal subdomain 1
UFD1_N2	PF24842	96 - 171	2.5e-37	Ubiquitin fusion degradation protein UFD1, N-terminal subdomain 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007333)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29070 AT2G29070 AT2G29070
fragaria_vesca	FvH4_3g36770 FvH4_3g36770
malus_domestica	MD03G1088700.v1.1 MD11G1097700.v1.1
prunus_persica	Prupe.6G073100_v2.0.a1 Prupe.6G073100_v2.0.a1
pyrus_communis	pycom03g07030 pycom11g08240
rosa_chinensis	RchiOBHm_Chr5g0065821
rosa_laevigata	RLG00000035819
rosa_multiflora	Rmu_sc0042868.1_g000003
rosa_roxburghii	Rroxscaffold_1G00015330
rosa_rugosa	Rorug05G0374000 Rorug05G0374000 Rorug05G0374000 Rorug05G0374000 Rorug05G0374000
rosa_samantha	Rh5AG432700 Rh5BG449000 Rh5CG471200 Rh5DG462500
rosa_wichuraiana	Rw5G040580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	417
AciI	CCGC	1 cut(s)	19
AclI	AACGTT	1 cut(s)	772
AcsI	RAATTY	2 cut(s)	182, 799
AcuI	CTGAAG	1 cut(s)	609
AcvI	CACGTG	1 cut(s)	112
AfaI	GTAC	1 cut(s)	213
AfiI	CCNNNNNNNGG	4 cut(s)	247, 286, 319, 632
AflII	CTTAAG	1 cut(s)	701
AgsI	TTSAA	7 cut(s)	134, 263, 339, 449, 605, 622, 798
AjnI	CCWGG	1 cut(s)	279
AloI	GAACNNNNNNTCC	2 cut(s)	243, 275
AluBI	AGCT	5 cut(s)	375, 542, 587, 784, 833
AluI	AGCT	5 cut(s)	375, 542, 587, 784, 833
Alw26I	GTCTC	6 cut(s)	64, 246, 353, 476, 568, 875
AoxI	GGCC	1 cut(s)	199
ApeKI	GCWGC	3 cut(s)	307, 706, 833
ApoI	RAATTY	2 cut(s)	182, 799
Asp700I	GAANNNNTTC	2 cut(s)	600, 661
AspS9I	GGNCC	1 cut(s)	199
AsuHPI	GGTGA	2 cut(s)	104, 407
BbrPI	CACGTG	1 cut(s)	112
BbvI	GCAGC	3 cut(s)	319, 718, 820
BccI	CCATC	4 cut(s)	220, 553, 647, 757
BcgI	CGANNNNNNTGC	2 cut(s)	26, 60
BciT130I	CCWGG	1 cut(s)	281
BcoDI	GTCTC	6 cut(s)	64, 246, 353, 476, 568, 875
BfrI	CTTAAG	1 cut(s)	701
BisI	GCNGC	3 cut(s)	308, 707, 834
BlsI	GCNGC	3 cut(s)	309, 708, 835
Bme1390I	CCNGG	1 cut(s)	281
BmgT120I	GGNCC	1 cut(s)	199
BmiI	GGNNCC	4 cut(s)	292, 411, 528, 733
BmrFI	CCNGG	1 cut(s)	281
BsaAI	YACGTR	1 cut(s)	112
BsaI	GGTCTC	1 cut(s)	568
BsaJI	CCNNGG	2 cut(s)	318, 735
BsaXI	ACNNNNNCTCC	2 cut(s)	243, 273
Bsc4I	CCNNNNNNNGG	4 cut(s)	247, 286, 319, 632
Bse1I	ACTGG	4 cut(s)	224, 397, 599, 683
BseBI	CCWGG	1 cut(s)	281
BseDI	CCNNGG	2 cut(s)	318, 735
BseGI	GGATG	2 cut(s)	228, 658
BseLI	CCNNNNNNNGG	4 cut(s)	247, 286, 319, 632
BseMII	CTCAG	1 cut(s)	849
BseNI	ACTGG	4 cut(s)	224, 397, 599, 683
BseRI	GAGGAG	2 cut(s)	385, 501
BseXI	GCAGC	3 cut(s)	319, 718, 820
BshFI	GGCC	1 cut(s)	201
BslI	CCNNNNNNNGG	4 cut(s)	247, 286, 319, 632
BsmAI	GTCTC	6 cut(s)	64, 246, 353, 476, 568, 875
BsmI	GAATGC	1 cut(s)	896
BsnI	GGCC	1 cut(s)	201
Bso31I	GGTCTC	1 cut(s)	568
BspACI	CCGC	1 cut(s)	19
BspANI	GGCC	1 cut(s)	201
BspCNI	CTCAG	1 cut(s)	850
BspHI	TCATGA	1 cut(s)	7
BspLI	GGNNCC	4 cut(s)	292, 411, 528, 733
BspTI	CTTAAG	1 cut(s)	701
BspTNI	GGTCTC	1 cut(s)	568
BsrI	ACTGG	4 cut(s)	224, 397, 599, 683
BssECI	CCNNGG	2 cut(s)	318, 735
BssT1I	CCWWGG	2 cut(s)	318, 735
Bst2UI	CCWGG	1 cut(s)	281
Bst4CI	ACNGT	1 cut(s)	491
Bst6I	CTCTTC	2 cut(s)	566, 864
BstAFI	CTTAAG	1 cut(s)	701
BstBAI	YACGTR	1 cut(s)	112
BstDEI	CTNAG	1 cut(s)	858
BstENI	CCTNNNNNAGG	2 cut(s)	245, 284
BstF5I	GGATG	2 cut(s)	228, 658
BstMAI	GTCTC	6 cut(s)	64, 246, 353, 476, 568, 875
BstMWI	GCNNNNNNNGC	2 cut(s)	27, 830
BstNI	CCWGG	1 cut(s)	281
BstNSI	RCATGY	1 cut(s)	238
BstSCI	CCNGG	1 cut(s)	279
BstV1I	GCAGC	3 cut(s)	319, 718, 820
BstXI	CCANNNNNNTGG	1 cut(s)	776
BsuRI	GGCC	1 cut(s)	201
BtsCI	GGATG	2 cut(s)	228, 658
BtsIMutI	CAGTG	1 cut(s)	390
CciI	TCATGA	1 cut(s)	7
Cfr13I	GGNCC	1 cut(s)	199
Csp6I	GTAC	1 cut(s)	212
CviAII	CATG	3 cut(s)	8, 235, 406
CviQI	GTAC	1 cut(s)	212
DdeI	CTNAG	1 cut(s)	858
Eam1104I	CTCTTC	2 cut(s)	566, 864
EarI	CTCTTC	2 cut(s)	566, 864
Eco130I	CCWWGG	2 cut(s)	318, 735
Eco31I	GGTCTC	1 cut(s)	568
Eco57I	CTGAAG	1 cut(s)	609
Eco72I	CACGTG	1 cut(s)	112
EcoNI	CCTNNNNNAGG	2 cut(s)	245, 284
EcoO109I	RGGNCCY	1 cut(s)	199
EcoRII	CCWGG	1 cut(s)	279
EcoT14I	CCWWGG	2 cut(s)	318, 735
ErhI	CCWWGG	2 cut(s)	318, 735
FaeI	CATG	3 cut(s)	11, 238, 409
FatI	CATG	3 cut(s)	7, 234, 405
FauI	CCCGC	1 cut(s)	26
Fnu4HI	GCNGC	3 cut(s)	308, 707, 834
FokI	GGATG	2 cut(s)	235, 665
Fsp4HI	GCNGC	3 cut(s)	308, 707, 834
GluI	GCNGC	3 cut(s)	308, 707, 834
HaeIII	GGCC	1 cut(s)	201
Hin1II	CATG	3 cut(s)	11, 238, 409
HindIII	AAGCTT	1 cut(s)	782
HinfI	GANTC	3 cut(s)	671, 740, 851
HphI	GGTGA	2 cut(s)	104, 407
Hpy166II	GTNNAC	1 cut(s)	115
Hpy188I	TCNGA	2 cut(s)	859, 921
Hpy188III	TCNNGA	4 cut(s)	8, 83, 515, 777
Hpy8I	GTNNAC	1 cut(s)	115
Hpy99I	CGWCG	1 cut(s)	670
HpyAV	CCTTC	2 cut(s)	672, 856
HpyCH4III	ACNGT	1 cut(s)	491
HpyCH4IV	ACGT	2 cut(s)	111, 772
HpyCH4V	TGCA	5 cut(s)	109, 307, 467, 614, 680
HpyF10VI	GCNNNNNNNGC	2 cut(s)	27, 830
HpyF3I	CTNAG	1 cut(s)	858
HpySE526I	ACGT	2 cut(s)	111, 772
Hsp92II	CATG	3 cut(s)	11, 238, 409
LmnI	GCTCC	5 cut(s)	243, 372, 547, 731, 841
Lsp1109I	GCAGC	3 cut(s)	319, 718, 820
MaeII	ACGT	2 cut(s)	111, 772
MaeIII	GTNAC	3 cut(s)	50, 160, 395
MboII	GAAGA	6 cut(s)	280, 583, 602, 605, 881, 919
MfeI	CAATTG	1 cut(s)	713
MluCI	AATT	3 cut(s)	182, 713, 799
MlyI	GAGTC	1 cut(s)	860
MmeI	TCCRAC	1 cut(s)	828
MroXI	GAANNNNTTC	2 cut(s)	600, 661
MseI	TTAA	3 cut(s)	138, 438, 702
MslI	CAYNNNNRTG	1 cut(s)	404
MspCI	CTTAAG	1 cut(s)	701
MspR9I	CCNGG	1 cut(s)	281
MunI	CAATTG	1 cut(s)	713
Mva1269I	GAATGC	1 cut(s)	896
MvaI	CCWGG	1 cut(s)	281
MwoI	GCNNNNNNNGC	2 cut(s)	27, 830
NlaIII	CATG	3 cut(s)	11, 238, 409
NlaIV	GGNNCC	4 cut(s)	292, 411, 528, 733
NmuCI	GTSAC	1 cut(s)	395
NspI	RCATGY	1 cut(s)	238
PagI	TCATGA	1 cut(s)	7
PctI	GAATGC	1 cut(s)	896
PdmI	GAANNNNTTC	2 cut(s)	600, 661
PfeI	GAWTC	2 cut(s)	671, 740
PkrI	GCNGC	3 cut(s)	309, 708, 835
PleI	GAGTC	1 cut(s)	859
PmaCI	CACGTG	1 cut(s)	112
PmlI	CACGTG	1 cut(s)	112
PpsI	GAGTC	1 cut(s)	859
Ppu21I	YACGTR	1 cut(s)	112
PsiI	TTATAA	1 cut(s)	417
Psp1406I	AACGTT	1 cut(s)	772
Psp6I	CCWGG	1 cut(s)	279
PspCI	CACGTG	1 cut(s)	112
PspGI	CCWGG	1 cut(s)	279
PspN4I	GGNNCC	4 cut(s)	292, 411, 528, 733
PspPI	GGNCC	1 cut(s)	199
RsaI	GTAC	1 cut(s)	213
RsaNI	GTAC	1 cut(s)	212
RseI	CAYNNNNRTG	1 cut(s)	404
SaqAI	TTAA	3 cut(s)	138, 438, 702
SatI	GCNGC	3 cut(s)	308, 707, 834
Sau96I	GGNCC	1 cut(s)	199
SchI	GAGTC	1 cut(s)	860
ScrFI	CCNGG	1 cut(s)	281
SmiMI	CAYNNNNRTG	1 cut(s)	404
SmlI	CTYRAG	1 cut(s)	701
SmoI	CTYRAG	1 cut(s)	701
Sse9I	AATT	3 cut(s)	182, 713, 799
SsiI	CCGC	1 cut(s)	19
StyD4I	CCNGG	1 cut(s)	279
StyI	CCWWGG	2 cut(s)	318, 735
TaaI	ACNGT	1 cut(s)	491
TaiI	ACGT	2 cut(s)	114, 775
TaqI	TCGA	3 cut(s)	69, 548, 665
TasI	AATT	3 cut(s)	182, 713, 799
TfiI	GAWTC	2 cut(s)	671, 740
Tru1I	TTAA	3 cut(s)	138, 438, 702
Tru9I	TTAA	3 cut(s)	138, 438, 702
TscAI	CASTG	1 cut(s)	397
TseFI	GTSAC	1 cut(s)	395
TseI	GCWGC	3 cut(s)	307, 706, 833
Tsp45I	GTSAC	1 cut(s)	395
TspDTI	ATGAA	3 cut(s)	24, 55, 543
TspGWI	ACGGA	2 cut(s)	683, 744
TspRI	CASTG	1 cut(s)	397
Vha464I	CTTAAG	1 cut(s)	701
XagI	CCTNNNNNAGG	2 cut(s)	245, 284
XapI	RAATTY	2 cut(s)	182, 799
XceI	RCATGY	1 cut(s)	238
XcmI	CCANNNNNNNNNTGG	1 cut(s)	352
XmnI	GAANNNNTTC	2 cut(s)	600, 661

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.