Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0007333

Physical Location & Seq

Genomic Coordinates Forward (+)

31501094 .. 31504037

Gene Structure 2944 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g36770.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGGCTCATGAATACCCTCGCAGTTCAGGATTTGAGCAGAGTTATCGTTGCTACCCTGTCTCGTTCATCGACAAGCAACATCTGGAAAAGGGTGATAAAATTATAATGCCTCCCTCAGCTCTCGATCGACTTGCATCTATGCAAGTTGACTACCCTATGTTATTTGAACTTAACAATAGTAGTGCTGGACGAGTTACTCATTGTGGGGTCTTGGAATTTGTTGCTGATGAGGGCCTCATCTATATACCATACTGGATGATGGAAAACATGCTCCTACAAGAGGGGGACATCGTTCAAGTGAAGAACAAAAGCCTTGTAAAGGGAACCTATGTGAAGTTGCAGCCTCACACCAAGGACTTCCTTGATATTTCAAACCCCAAAGCCATTTTGGAGACTACATTGAGGAGCTACTCTTGTTTGACCACTGGTGACACTATCATGGTTCCTTATAACAATAAGAAGTATTACATTAACATAGTTGAAGCAAAACCCTCATCTGCAGTCAGTATCATTGAGACAGACTGTGAGGTTGATTTTGCCCCTCCTCTTGATTATGTGGAACCTGAAAAACCAGCATCATCTACTTTGGCAAAGAAGAGACCACAAGAAGCTGAAGAAGATCAAGTTCAAAAGGTTGCAAGGTTCAATCCATTTACAGGTTCAGCAAGGCGATTGGACGGAAAGCCTTCGACAGAATCAGTTGCACCCGTAATTAAGCCGCACCAACTTGAGAGTGAAAATGGAACCAAGGATACCAAGCCATCAACTTCTGCTTCACGCCAACGTTCTGGAAAGCTTGTGTTTGGTTCAAATTCCAACCAGCCCACTAAAGAAGCCCCAAAAGTGGTGCCTAAGAAACAAGAGACATCTGAGAAAGCACCAAAGAAACAAGAGACATCTGAGAAGGCACAGGAGGAAAAAGAGACAAAGTTCCAAGCATTCACAGGGAAGAAGTATTCTCTAAAAGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001817 GO:0001818 GO:0002682 GO:0002683 GO:0002697 GO:0002698 GO:0002831 GO:0002832 GO:0003674 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009966 GO:0009968 GO:0009987 GO:0010646 GO:0010648 GO:0012505 GO:0016020 GO:0019538 GO:0019899 GO:0019941 GO:0023051 GO:0023057 GO:0030163 GO:0031347 GO:0031348 GO:0031984 GO:0032101 GO:0032102 GO:0032479 GO:0032480 GO:0032991 GO:0034098 GO:0036501 GO:0039531 GO:0039532 GO:0039535 GO:0039536 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0043900 GO:0043901 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0045088 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050687 GO:0050688 GO:0050776 GO:0050789 GO:0050794 GO:0051117 GO:0051239 GO:0051241 GO:0051603 GO:0065007 GO:0071704 GO:0080134 GO:0098796 GO:0098827 GO:1901564 GO:1901565 GO:1901575 GO:1902531 GO:1902532

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

UFD1

Protein Analysis

324

Amino Acids

36.21

Weight (kDa)

8.13

Isoelectric Point (pI)

45.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UFD1_N1	PF03152	11 - 105	3.8e-40	Ubiquitin fusion degradation protein UFD1, N-terminal subdomain 1
UFD1_N2	PF24842	107 - 182	2.8e-37	Ubiquitin fusion degradation protein UFD1, N-terminal subdomain 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007333)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29070 AT2G29070 AT2G29070
fragaria_vesca	FvH4_3g36770 FvH4_3g36770
malus_domestica	MD03G1088700.v1.1 MD11G1097700.v1.1
prunus_persica	Prupe.6G073100_v2.0.a1 Prupe.6G073100_v2.0.a1
pyrus_communis	pycom03g07030 pycom11g08240
rosa_chinensis	RchiOBHm_Chr5g0065821
rosa_laevigata	RLG00000035819
rosa_multiflora	Rmu_sc0042868.1_g000003
rosa_roxburghii	Rroxscaffold_1G00015330
rosa_rugosa	Rorug05G0374000 Rorug05G0374000 Rorug05G0374000 Rorug05G0374000 Rorug05G0374000
rosa_samantha	Rh5AG432700 Rh5BG449000 Rh5CG471200 Rh5DG462500
rosa_wichuraiana	Rw5G040580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	104, 450
AccB1I	GGYRCC	1 cut(s)	847
AciI	CCGC	1 cut(s)	719
AclI	AACGTT	1 cut(s)	784
AcsI	RAATTY	2 cut(s)	215, 811
AcuI	CTGAAG	1 cut(s)	633
AfiI	CCNNNNNNNGG	4 cut(s)	280, 319, 656, 844
AgsI	TTSAA	7 cut(s)	167, 296, 372, 482, 629, 646, 810
AluBI	AGCT	4 cut(s)	119, 408, 611, 796
AluI	AGCT	4 cut(s)	119, 408, 611, 796
Alw26I	GTCTC	7 cut(s)	64, 386, 509, 592, 857, 887, 917
AoxI	GGCC	1 cut(s)	232
ApeKI	GCWGC	1 cut(s)	340
ApoI	RAATTY	2 cut(s)	215, 811
Asp700I	GAANNNNTTC	1 cut(s)	685
AspS9I	GGNCC	1 cut(s)	232
AsuHPI	GGTGA	2 cut(s)	104, 440
BanI	GGYRCC	1 cut(s)	847
BbvCI	CCTCAGC	1 cut(s)	115
BbvI	GCAGC	1 cut(s)	352
BccI	CCATC	2 cut(s)	253, 769
BcgI	CGANNNNNNTGC	4 cut(s)	26, 60, 113, 147
BciVI	GTATCC	1 cut(s)	745
BcoDI	GTCTC	7 cut(s)	64, 386, 509, 592, 857, 887, 917
BfmI	CTRYAG	1 cut(s)	498
BfuI	GTATCC	1 cut(s)	745
BisI	GCNGC	2 cut(s)	341, 719
BlsI	GCNGC	2 cut(s)	342, 720
BmgT120I	GGNCC	1 cut(s)	232
BmiI	GGNNCC	5 cut(s)	325, 444, 561, 745, 849
BmsI	GCATC	2 cut(s)	143, 584
Bpu10I	CCTNAGC	1 cut(s)	115
BpuEI	CTTGAG	1 cut(s)	749
BsaI	GGTCTC	1 cut(s)	592
BsaJI	CCNNGG	2 cut(s)	351, 747
Bsc4I	CCNNNNNNNGG	4 cut(s)	280, 319, 656, 844
Bse1I	ACTGG	2 cut(s)	257, 430
BseDI	CCNNGG	2 cut(s)	351, 747
BseGI	GGATG	1 cut(s)	261
BseLI	CCNNNNNNNGG	4 cut(s)	280, 319, 656, 844
BseMII	CTCAG	3 cut(s)	129, 861, 891
BseNI	ACTGG	2 cut(s)	257, 430
BseRI	GAGGAG	2 cut(s)	418, 534
BseXI	GCAGC	1 cut(s)	352
Bsh1285I	CGRYCG	1 cut(s)	127
BshFI	GGCC	1 cut(s)	234
BshNI	GGYRCC	1 cut(s)	847
BsiEI	CGRYCG	1 cut(s)	127
BslFI	GGGAC	1 cut(s)	299
BslI	CCNNNNNNNGG	4 cut(s)	280, 319, 656, 844
BsmAI	GTCTC	7 cut(s)	64, 386, 509, 592, 857, 887, 917
BsmFI	GGGAC	1 cut(s)	299
BsmI	GAATGC	1 cut(s)	938
BsnI	GGCC	1 cut(s)	234
Bso31I	GGTCTC	1 cut(s)	592
Bsp143I	GATC	2 cut(s)	124, 619
BspACI	CCGC	1 cut(s)	719
BspANI	GGCC	1 cut(s)	234
BspCNI	CTCAG	3 cut(s)	128, 862, 892
BspHI	TCATGA	1 cut(s)	7
BspLI	GGNNCC	5 cut(s)	325, 444, 561, 745, 849
BspMAI	CTGCAG	1 cut(s)	502
BspT107I	GGYRCC	1 cut(s)	847
BspTNI	GGTCTC	1 cut(s)	592
BsrI	ACTGG	2 cut(s)	257, 430
BssECI	CCNNGG	2 cut(s)	351, 747
BssMI	GATC	2 cut(s)	124, 619
BssT1I	CCWWGG	2 cut(s)	351, 747
Bst4CI	ACNGT	1 cut(s)	524
Bst6I	CTCTTC	1 cut(s)	590
BstDEI	CTNAG	4 cut(s)	115, 852, 870, 900
BstENI	CCTNNNNNAGG	2 cut(s)	278, 317
BstF5I	GGATG	1 cut(s)	261
BstKTI	GATC	2 cut(s)	127, 622
BstMAI	GTCTC	7 cut(s)	64, 386, 509, 592, 857, 887, 917
BstMBI	GATC	2 cut(s)	124, 619
BstMCI	CGRYCG	1 cut(s)	127
BstNSI	RCATGY	1 cut(s)	271
BstSFI	CTRYAG	1 cut(s)	498
BstV1I	GCAGC	1 cut(s)	352
BstXI	CCANNNNNNTGG	1 cut(s)	788
BsuI	GTATCC	1 cut(s)	745
BsuRI	GGCC	1 cut(s)	234
BtsCI	GGATG	1 cut(s)	261
BtsIMutI	CAGTG	1 cut(s)	423
CciI	TCATGA	1 cut(s)	7
Cfr13I	GGNCC	1 cut(s)	232
CviAII	CATG	3 cut(s)	8, 268, 439
DdeI	CTNAG	4 cut(s)	115, 852, 870, 900
DpnI	GATC	2 cut(s)	126, 621
DpnII	GATC	2 cut(s)	124, 619
Eam1104I	CTCTTC	1 cut(s)	590
EarI	CTCTTC	1 cut(s)	590
Eco130I	CCWWGG	2 cut(s)	351, 747
Eco31I	GGTCTC	1 cut(s)	592
Eco57I	CTGAAG	1 cut(s)	633
EcoNI	CCTNNNNNAGG	2 cut(s)	278, 317
EcoO109I	RGGNCCY	1 cut(s)	232
EcoT14I	CCWWGG	2 cut(s)	351, 747
ErhI	CCWWGG	2 cut(s)	351, 747
FaeI	CATG	3 cut(s)	11, 271, 442
FaqI	GGGAC	1 cut(s)	299
FatI	CATG	3 cut(s)	7, 267, 438
Fnu4HI	GCNGC	2 cut(s)	341, 719
FokI	GGATG	1 cut(s)	268
Fsp4HI	GCNGC	2 cut(s)	341, 719
GluI	GCNGC	2 cut(s)	341, 719
HaeIII	GGCC	1 cut(s)	234
Hin1II	CATG	3 cut(s)	11, 271, 442
HincII	GTYRAC	1 cut(s)	148
HindII	GTYRAC	1 cut(s)	148
HindIII	AAGCTT	1 cut(s)	794
HinfI	GANTC	1 cut(s)	695
HphI	GGTGA	2 cut(s)	104, 440
Hpy166II	GTNNAC	1 cut(s)	148
Hpy188I	TCNGA	2 cut(s)	871, 901
Hpy188III	TCNNGA	6 cut(s)	8, 27, 83, 122, 548, 789
Hpy8I	GTNNAC	1 cut(s)	148
HpyAV	CCTTC	2 cut(s)	696, 898
HpyCH4III	ACNGT	1 cut(s)	524
HpyCH4IV	ACGT	1 cut(s)	784
HpyCH4V	TGCA	6 cut(s)	134, 142, 340, 500, 638, 704
HpyF3I	CTNAG	4 cut(s)	115, 852, 870, 900
HpySE526I	ACGT	1 cut(s)	784
Hsp92II	CATG	3 cut(s)	11, 271, 442
Kzo9I	GATC	2 cut(s)	124, 619
LmnI	GCTCC	2 cut(s)	276, 405
Lsp1109I	GCAGC	1 cut(s)	352
LweI	GCATC	2 cut(s)	143, 584
MaeII	ACGT	1 cut(s)	784
MaeIII	GTNAC	2 cut(s)	193, 428
MalI	GATC	2 cut(s)	126, 621
MboI	GATC	2 cut(s)	124, 619
MboII	GAAGA	5 cut(s)	313, 607, 626, 629, 961
MluCI	AATT	4 cut(s)	99, 215, 711, 811
MmeI	TCCRAC	1 cut(s)	840
MroXI	GAANNNNTTC	1 cut(s)	685
MseI	TTAA	3 cut(s)	171, 471, 714
MslI	CAYNNNNRTG	1 cut(s)	437
Mva1269I	GAATGC	1 cut(s)	938
NdeII	GATC	2 cut(s)	124, 619
NlaIII	CATG	3 cut(s)	11, 271, 442
NlaIV	GGNNCC	5 cut(s)	325, 444, 561, 745, 849
NmuCI	GTSAC	1 cut(s)	428
NspI	RCATGY	1 cut(s)	271
PagI	TCATGA	1 cut(s)	7
PctI	GAATGC	1 cut(s)	938
PdmI	GAANNNNTTC	1 cut(s)	685
PfeI	GAWTC	1 cut(s)	695
PkrI	GCNGC	2 cut(s)	342, 720
Ple19I	CGATCG	1 cut(s)	127
PsiI	TTATAA	2 cut(s)	104, 450
Psp1406I	AACGTT	1 cut(s)	784
PspN4I	GGNNCC	5 cut(s)	325, 444, 561, 745, 849
PspPI	GGNCC	1 cut(s)	232
PsrI	GAACNNNNNNTAC	2 cut(s)	736, 768
PstI	CTGCAG	1 cut(s)	502
PvuI	CGATCG	1 cut(s)	127
RseI	CAYNNNNRTG	1 cut(s)	437
SaqAI	TTAA	3 cut(s)	171, 471, 714
SatI	GCNGC	2 cut(s)	341, 719
Sau3AI	GATC	2 cut(s)	124, 619
Sau96I	GGNCC	1 cut(s)	232
SfaNI	GCATC	2 cut(s)	143, 584
SfcI	CTRYAG	1 cut(s)	498
SmiMI	CAYNNNNRTG	1 cut(s)	437
SmlI	CTYRAG	1 cut(s)	728
SmoI	CTYRAG	1 cut(s)	728
Sse9I	AATT	4 cut(s)	99, 215, 711, 811
SsiI	CCGC	1 cut(s)	719
StyI	CCWWGG	2 cut(s)	351, 747
TaaI	ACNGT	1 cut(s)	524
TaiI	ACGT	1 cut(s)	787
TaqI	TCGA	4 cut(s)	69, 123, 127, 689
TasI	AATT	4 cut(s)	99, 215, 711, 811
TauI	GCSGC	1 cut(s)	721
TfiI	GAWTC	1 cut(s)	695
Tru1I	TTAA	3 cut(s)	171, 471, 714
Tru9I	TTAA	3 cut(s)	171, 471, 714
TscAI	CASTG	1 cut(s)	430
TseFI	GTSAC	1 cut(s)	428
TseI	GCWGC	1 cut(s)	340
Tsp45I	GTSAC	1 cut(s)	428
TspDTI	ATGAA	2 cut(s)	24, 55
TspGWI	ACGGA	1 cut(s)	693
TspRI	CASTG	1 cut(s)	430
XagI	CCTNNNNNAGG	2 cut(s)	278, 317
XapI	RAATTY	2 cut(s)	215, 811
XceI	RCATGY	1 cut(s)	271
XcmI	CCANNNNNNNNNTGG	1 cut(s)	385
XmnI	GAANNNNTTC	1 cut(s)	685

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.