AT2G29380

phosphatase 2C

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0010786
Physical Location & Seq
Forward (+)
12608675 .. 12610350
1676 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G29380.1

Sequence Viewer

Length: 1089 bp
ATGGCCGAGATATGTTACGAAGTAGTGACCGACGCATGTCCGTCGTCGGTTTATGAATCAACGCCGGCACATTCACGGCGGAGGCCGAGATTCCAAACGGTGATGCATGAAGATTGGGAGAAGAATTGTAAGCGTAGTAAACAGGAGGCTTTAGCTACGAGATACTCTTCAATTCCTCGAAGCTCTCGGGAGGATTTCTCTGACCAAAATGTCGACGTATCCAGTCCAAGATACGGTGTTTCTTCGGTGTGCGGTAGAAGAAGAGAGATGGAAGATGCGGTGGCAATTCATCCTTCATTTTCTTCTCCGAAGAATTCGGAATTTCCTCAACACTACTTTGGTGTGTATGACGGCCATGGTTGTTCCCACGTTGCAGCAAGGTGTAGAGAGAGGCTTCACAAGCTGGTGCAAGAAGAACTAAGTTCAGATATGGAAGATGAAGAAGAATGGAAAACGACGATGGAGCGTAGCTTCACACGCATGGATAAGGAAGTTGTATCGTGGGGTGATTCCGTCGTGACTGCAAATTGCAAGTGTGATCTACAAACACCGGCTTGTGATTCCGTCGGATCAACCGCTGTTGTCTCAGTCATTACGCCAGATAAGATCGTTGTCGCCAATTGTGGCGATTCCAGAGCAGTTCTCTGCCGCAATGGGAAACCAGTCCCTTTATCAACCGATCACAAGCCTGATCGGCCAGACGAATTGGATCGAATCGAAGGAGCTGGTGGACGAGTCATATATTGGGACTGTCCAAGAGTTCTCGGAGTCTTAGCAATGTCACGAGCAATAGGAGACAACTATTTGAAACCTTACGTGAGTTGCGAGCCGGAGGTAACCATAACGGACAGGAGAGACGATGACTGCCTCATACTAGCTAGTGATGGTTTATGGGATGTTGTGTCAAACGAGACCGCCTGCTCTGTAGCGCGTATGTGTCTCCGTGGTGGTGGGAGAAGACAAGATAATGAGGATCCGGCGATTTCGGACAAGGCTTGTACGGAAGCGTCAGTATTGCTAACAAAGCTGGCGTTGGCAAGGAACAGTAGTGACAACGTCAGTGTCGTTGTGATTGATCTCAGAAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005794 GO:0005801 GO:0005829 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006996 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009628 GO:0009657 GO:0009658 GO:0009719 GO:0009725 GO:0009737 GO:0009787 GO:0009788 GO:0009791 GO:0009937 GO:0009939 GO:0009966 GO:0009967 GO:0009968 GO:0009987 GO:0010029 GO:0010030 GO:0010033 GO:0010035 GO:0010118 GO:0010150 GO:0010154 GO:0010162 GO:0010431 GO:0010646 GO:0010647 GO:0010648 GO:0012505 GO:0016020 GO:0016043 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0021700 GO:0022414 GO:0022611 GO:0023051 GO:0023056 GO:0023057 GO:0031090 GO:0032501 GO:0032502 GO:0032504 GO:0033106 GO:0033993 GO:0036211 GO:0042221 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048366 GO:0048367 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048581 GO:0048582 GO:0048583 GO:0048584 GO:0048585 GO:0048608 GO:0048609 GO:0048731 GO:0048827 GO:0048838 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051094 GO:0051239 GO:0051240 GO:0051241 GO:0061458 GO:0065007 GO:0071695 GO:0071704 GO:0071840 GO:0080050 GO:0090693 GO:0097305 GO:0097438 GO:0098588 GO:0099402 GO:0140096 GO:1900140 GO:1901419 GO:1901420 GO:1901564 GO:1901700 GO:1902039 GO:1905957 GO:1905958 GO:2000026 GO:2000033 GO:2000034 GO:2000241 GO:2000242 GO:2000692
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 ko04931 map04016 map04075 map04931
Pfam Domains
Protein Families
PP2C

Protein Analysis

362

Amino Acids

40.3

Weight (kDa)

5.34

Isoelectric Point (pI)

65.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2C PF00481 78 - 353 2.3e-65 Protein phosphatase 2C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010786)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G29380 AT5G59220 AT5G59220
fragaria_vesca FvH4_3g37010 FvH4_3g37010
malus_domestica MD03G1085400.v1.1 MD11G1093100.v1.1
prunus_persica Prupe.6G068800_v2.0.a1
pyrus_communis pycom03g06750 pycom11g07870
rosa_chinensis RchiOBHm_Chr5g0066401
rosa_laevigata RLG00000035860
rosa_multiflora Rmu_ssc0000249.1_g000014
rosa_roxburghii Rroxscaffold_1G00014640
rosa_rugosa Rorug05G0378000
rosa_samantha Rh5AG436700 Rh5BG452900 Rh5CG475300 Rh5DG468100
rosa_wichuraiana Rw5G040890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 209
AccI GTMKAC 1 cut(s) 213
AccII CGCG 1 cut(s) 931
AciI CCGC 6 cut(s) 79, 252, 278, 576, 649, 915
AclWI GGATC 4 cut(s) 577, 717, 968, 981
AcoI YGGCCR 3 cut(s) 3, 352, 695
AcsI RAATTY 2 cut(s) 313, 320
AfaI GTAC 1 cut(s) 1000
AfiI CCNNNNNNNGG 1 cut(s) 233
AgsI TTSAA 2 cut(s) 171, 808
AluBI AGCT 7 cut(s) 155, 183, 403, 471, 725, 878, 1027
AluI AGCT 7 cut(s) 155, 183, 403, 471, 725, 878, 1027
Alw26I GTCTC 5 cut(s) 589, 789, 849, 905, 944
AlwI GGATC 4 cut(s) 577, 717, 968, 981
Ama87I CYCGRG 1 cut(s) 186
AoxI GGCC 4 cut(s) 3, 83, 352, 695
ApeKI GCWGC 1 cut(s) 374
ApoI RAATTY 2 cut(s) 313, 320
AspLEI GCGC 1 cut(s) 931
AsuHPI GGTGA 2 cut(s) 112, 518
AvaI CYCGRG 1 cut(s) 186
BamHI GGATCC 1 cut(s) 973
BauI CACGAG 1 cut(s) 783
BbsI GAAGAC 1 cut(s) 964
BbvI GCAGC 1 cut(s) 386
BccI CCATC 3 cut(s) 262, 454, 878
BceAI ACGGC 2 cut(s) 92, 367
BcgI CGANNNNNNTGC 2 cut(s) 24, 58
BciVI GTATCC 1 cut(s) 229
BcoDI GTCTC 5 cut(s) 589, 789, 849, 905, 944
BfaI CTAG 2 cut(s) 875, 879
BfmI CTRYAG 1 cut(s) 924
BfuI GTATCC 1 cut(s) 229
BglI GCCNNNNNGGC 1 cut(s) 694
BisI GCNGC 2 cut(s) 375, 649
BlsI GCNGC 2 cut(s) 376, 650
BmeT110I CYCGRG 1 cut(s) 186
BmiI GGNNCC 1 cut(s) 975
BmsI GCATC 2 cut(s) 93, 265
BoxI GACNNNNGTC 1 cut(s) 36
BpiI GAAGAC 1 cut(s) 964
BplI GAGNNNNNCTC 4 cut(s) 182, 214, 627, 659
BsaAI YACGTR 1 cut(s) 817
BsaI GGTCTC 1 cut(s) 905
BsaJI CCNNGG 2 cut(s) 355, 943
Bsc4I CCNNNNNNNGG 1 cut(s) 233
Bse118I RCCGGY 2 cut(s) 64, 550
Bse1I ACTGG 2 cut(s) 222, 662
Bse3DI GCAATG 2 cut(s) 658, 783
BseDI CCNNGG 2 cut(s) 355, 943
BseGI GGATG 2 cut(s) 289, 901
BseLI CCNNNNNNNGG 1 cut(s) 233
BseMI GCAATG 2 cut(s) 658, 783
BseMII CTCAG 1 cut(s) 600
BseNI ACTGG 2 cut(s) 222, 662
BseXI GCAGC 1 cut(s) 386
Bsh1236I CGCG 1 cut(s) 931
BshFI GGCC 4 cut(s) 5, 85, 354, 697
BsiHKCI CYCGRG 1 cut(s) 186
BsiSI CCGG 4 cut(s) 65, 551, 830, 977
BslFI GGGAC 2 cut(s) 650, 761
BslI CCNNNNNNNGG 1 cut(s) 233
BsmAI GTCTC 5 cut(s) 589, 789, 849, 905, 944
BsmBI CGTCTC 1 cut(s) 849
BsmFI GGGAC 2 cut(s) 650, 761
BsnI GGCC 4 cut(s) 5, 85, 354, 697
Bso31I GGTCTC 1 cut(s) 905
BsoBI CYCGRG 1 cut(s) 186
Bsp143I GATC 8 cut(s) 538, 569, 606, 679, 691, 709, 973, 1075
Bsp19I CCATGG 1 cut(s) 355
BspACI CCGC 6 cut(s) 79, 252, 278, 576, 649, 915
BspANI GGCC 4 cut(s) 5, 85, 354, 697
BspCNI CTCAG 1 cut(s) 599
BspFNI CGCG 1 cut(s) 931
BspLI GGNNCC 1 cut(s) 975
BspPI GGATC 4 cut(s) 577, 717, 968, 981
BspTNI GGTCTC 1 cut(s) 905
BsrDI GCAATG 2 cut(s) 658, 783
BsrFI RCCGGY 2 cut(s) 64, 550
BsrI ACTGG 2 cut(s) 222, 662
BssAI RCCGGY 2 cut(s) 64, 550
BssECI CCNNGG 2 cut(s) 355, 943
BssMI GATC 8 cut(s) 538, 569, 606, 679, 691, 709, 973, 1075
BssSI CACGAG 1 cut(s) 783
BssT1I CCWWGG 1 cut(s) 355
Bst2BI CACGAG 1 cut(s) 783
Bst4CI ACNGT 4 cut(s) 100, 236, 752, 1046
Bst6I CTCTTC 2 cut(s) 172, 256
BstBAI YACGTR 1 cut(s) 817
BstC8I GCNNGC 4 cut(s) 66, 827, 919, 1029
BstDEI CTNAG 4 cut(s) 419, 586, 772, 1079
BstDSI CCRYGG 2 cut(s) 355, 943
BstEII GGTNACC 1 cut(s) 835
BstF5I GGATG 2 cut(s) 289, 901
BstFNI CGCG 1 cut(s) 931
BstHHI GCGC 1 cut(s) 931
BstKTI GATC 8 cut(s) 541, 572, 609, 682, 694, 712, 976, 1078
BstMAI GTCTC 5 cut(s) 589, 789, 849, 905, 944
BstMBI GATC 8 cut(s) 538, 569, 606, 679, 691, 709, 973, 1075
BstMWI GCNNNNNNNGC 4 cut(s) 400, 477, 694, 1024
BstNSI RCATGY 1 cut(s) 39
BstPAI GACNNNNGTC 1 cut(s) 36
BstPI GGTNACC 1 cut(s) 835
BstSFI CTRYAG 1 cut(s) 924
BstUI CGCG 1 cut(s) 931
BstV1I GCAGC 1 cut(s) 386
BstV2I GAAGAC 1 cut(s) 964
BstX2I RGATCY 1 cut(s) 973
BstYI RGATCY 1 cut(s) 973
BsuI GTATCC 1 cut(s) 229
BsuRI GGCC 4 cut(s) 5, 85, 354, 697
BtgI CCRYGG 2 cut(s) 355, 943
BtsCI GGATG 2 cut(s) 289, 901
BtsIMutI CAGTG 1 cut(s) 1066
Cac8I GCNNGC 4 cut(s) 66, 827, 919, 1029
CfoI GCGC 1 cut(s) 931
Cfr10I RCCGGY 2 cut(s) 64, 550
CseI GACGC 2 cut(s) 41, 996
Csp6I GTAC 1 cut(s) 999
CviAII CATG 4 cut(s) 36, 107, 356, 481
CviQI GTAC 1 cut(s) 999
DdeI CTNAG 4 cut(s) 419, 586, 772, 1079
DpnI GATC 8 cut(s) 540, 571, 608, 681, 693, 711, 975, 1077
DpnII GATC 8 cut(s) 538, 569, 606, 679, 691, 709, 973, 1075
DrdI GACNNNNNNGTC 1 cut(s) 209
DseDI GACNNNNNNGTC 1 cut(s) 209
EaeI YGGCCR 3 cut(s) 3, 352, 695
Eam1104I CTCTTC 2 cut(s) 172, 256
EarI CTCTTC 2 cut(s) 172, 256
EciI GGCGGA 1 cut(s) 94
Eco130I CCWWGG 1 cut(s) 355
Eco31I GGTCTC 1 cut(s) 905
Eco88I CYCGRG 1 cut(s) 186
Eco91I GGTNACC 1 cut(s) 835
EcoO65I GGTNACC 1 cut(s) 835
EcoRI GAATTC 1 cut(s) 313
EcoT14I CCWWGG 1 cut(s) 355
EcoT22I ATGCAT 1 cut(s) 108
ErhI CCWWGG 1 cut(s) 355
Esp3I CGTCTC 1 cut(s) 849
FaeI CATG 4 cut(s) 39, 110, 359, 484
FaqI GGGAC 2 cut(s) 650, 761
FatI CATG 4 cut(s) 35, 106, 355, 480
FblI GTMKAC 1 cut(s) 213
Fnu4HI GCNGC 2 cut(s) 375, 649
FokI GGATG 2 cut(s) 276, 908
Fsp4HI GCNGC 2 cut(s) 375, 649
FspBI CTAG 2 cut(s) 875, 879
GlaI GCGC 1 cut(s) 930
GluI GCNGC 2 cut(s) 375, 649
HaeIII GGCC 4 cut(s) 5, 85, 354, 697
HapII CCGG 4 cut(s) 65, 551, 830, 977
HgaI GACGC 2 cut(s) 41, 996
HhaI GCGC 1 cut(s) 931
Hin1II CATG 4 cut(s) 39, 110, 359, 484
Hin6I GCGC 1 cut(s) 929
HinP1I GCGC 1 cut(s) 929
HincII GTYRAC 1 cut(s) 214
HindII GTYRAC 1 cut(s) 214
HinfI GANTC 8 cut(s) 56, 90, 509, 560, 629, 714, 735, 768
HpaII CCGG 4 cut(s) 65, 551, 830, 977
HphI GGTGA 2 cut(s) 112, 518
Hpy166II GTNNAC 3 cut(s) 140, 214, 731
Hpy188I TCNGA 8 cut(s) 202, 309, 319, 427, 569, 767, 988, 1082
Hpy188III TCNNGA 4 cut(s) 188, 517, 633, 783
Hpy8I GTNNAC 3 cut(s) 140, 214, 731
Hpy99I CGWCG 7 cut(s) 35, 46, 49, 218, 460, 518, 569
HpyAV CCTTC 2 cut(s) 303, 713
HpyCH4III ACNGT 4 cut(s) 100, 236, 752, 1046
HpyCH4IV ACGT 4 cut(s) 216, 369, 816, 1056
HpyCH4V TGCA 5 cut(s) 106, 374, 409, 524, 531
HpyF10VI GCNNNNNNNGC 4 cut(s) 400, 477, 694, 1024
HpyF3I CTNAG 4 cut(s) 419, 586, 772, 1079
HpySE526I ACGT 4 cut(s) 216, 369, 816, 1056
Hsp92II CATG 4 cut(s) 39, 110, 359, 484
HspAI GCGC 1 cut(s) 929
KroI GCCGGC 1 cut(s) 64
KroNI GCCGGC 1 cut(s) 66
Kzo9I GATC 8 cut(s) 538, 569, 606, 679, 691, 709, 973, 1075
LmnI GCTCC 2 cut(s) 463, 722
Lsp1109I GCAGC 1 cut(s) 386
LweI GCATC 2 cut(s) 93, 265
MaeI CTAG 2 cut(s) 875, 879
MaeII ACGT 4 cut(s) 216, 369, 816, 1056
MaeIII GTNAC 6 cut(s) 14, 25, 517, 780, 835, 1049
MalI GATC 8 cut(s) 540, 571, 608, 681, 693, 711, 975, 1077
MboI GATC 8 cut(s) 538, 569, 606, 679, 691, 709, 973, 1075
MfeI CAATTG 1 cut(s) 619
MflI RGATCY 1 cut(s) 973
MluCI AATT 8 cut(s) 124, 171, 285, 313, 320, 526, 619, 704
MlyI GAGTC 2 cut(s) 744, 777
MmeI TCCRAC 1 cut(s) 547
MnlI CCTC 9 cut(s) 75, 139, 184, 186, 336, 384, 826, 878, 964
Mph1103I ATGCAT 1 cut(s) 108
MroNI GCCGGC 1 cut(s) 64
MslI CAYNNNNRTG 1 cut(s) 479
MspA1I CMGCKG 1 cut(s) 578
MspI CCGG 4 cut(s) 65, 551, 830, 977
MunI CAATTG 1 cut(s) 619
MvnI CGCG 1 cut(s) 931
MwoI GCNNNNNNNGC 4 cut(s) 400, 477, 694, 1024
NaeI GCCGGC 1 cut(s) 66
NcoI CCATGG 1 cut(s) 355
NdeII GATC 8 cut(s) 538, 569, 606, 679, 691, 709, 973, 1075
NgoMIV GCCGGC 1 cut(s) 64
NlaIII CATG 4 cut(s) 39, 110, 359, 484
NlaIV GGNNCC 1 cut(s) 975
NmeAIII GCCGAG 2 cut(s) 31, 111
NmuCI GTSAC 4 cut(s) 25, 517, 780, 1049
NsiI ATGCAT 1 cut(s) 108
NspI RCATGY 1 cut(s) 39
PcsI WCGNNNNNNNCGW 2 cut(s) 822, 1062
PdiI GCCGGC 1 cut(s) 66
PfeI GAWTC 6 cut(s) 56, 90, 509, 560, 629, 714
PflFI GACNNNGTC 1 cut(s) 1055
PkrI GCNGC 2 cut(s) 376, 650
PleI GAGTC 2 cut(s) 743, 776
PpsI GAGTC 2 cut(s) 743, 776
Ppu21I YACGTR 1 cut(s) 817
PshAI GACNNNNGTC 1 cut(s) 36
PspEI GGTNACC 1 cut(s) 835
PspN4I GGNNCC 1 cut(s) 975
PsuI RGATCY 1 cut(s) 973
PsyI GACNNNGTC 1 cut(s) 1055
RsaI GTAC 1 cut(s) 1000
RsaNI GTAC 1 cut(s) 999
RseI CAYNNNNRTG 1 cut(s) 479
SalI GTCGAC 1 cut(s) 212
SatI GCNGC 2 cut(s) 375, 649
Sau3AI GATC 8 cut(s) 538, 569, 606, 679, 691, 709, 973, 1075
SchI GAGTC 2 cut(s) 744, 777
SfaNI GCATC 2 cut(s) 93, 265
SfcI CTRYAG 1 cut(s) 924
SmiMI CAYNNNNRTG 1 cut(s) 479
Sse9I AATT 8 cut(s) 124, 171, 285, 313, 320, 526, 619, 704
SsiI CCGC 6 cut(s) 79, 252, 278, 576, 649, 915
SspMI CTAG 2 cut(s) 875, 879
StyI CCWWGG 1 cut(s) 355
TaaI ACNGT 4 cut(s) 100, 236, 752, 1046
TaiI ACGT 4 cut(s) 219, 372, 819, 1059
TaqI TCGA 4 cut(s) 178, 213, 712, 717
TaqII GACCGA 1 cut(s) 44
TasI AATT 8 cut(s) 124, 171, 285, 313, 320, 526, 619, 704
TauI GCSGC 1 cut(s) 651
TfiI GAWTC 6 cut(s) 56, 90, 509, 560, 629, 714
TscAI CASTG 1 cut(s) 1066
TseFI GTSAC 4 cut(s) 25, 517, 780, 1049
TseI GCWGC 1 cut(s) 374
Tsp45I GTSAC 4 cut(s) 25, 517, 780, 1049
TspDTI ATGAA 5 cut(s) 69, 123, 278, 285, 453
TspGWI ACGGA 6 cut(s) 30, 502, 553, 860, 932, 1016
TspRI CASTG 1 cut(s) 1066
Tth111I GACNNNGTC 1 cut(s) 1055
XapI RAATTY 2 cut(s) 313, 320
XceI RCATGY 1 cut(s) 39
XmiI GTMKAC 1 cut(s) 213
XspI CTAG 2 cut(s) 875, 879
Zsp2I ATGCAT 1 cut(s) 108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.