Rw5G040890

phosphatase 2C

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0010786
Physical Location & Seq
Forward (+)
72174371 .. 72176230
1860 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G040890.1

Sequence Viewer

Length: 921 bp
ATGGCGGAGATTTGTTACGGGGTTTTGGGCGAGAACGAGGCGTCCAGCGCGTGCGAGACGAGCTCACGGGCCGCTAGGCGGAGGAGGATGGAGATCAGGCGGTTTAAGTTCGTCTCCGGCGTGGCGGCCCCTGCCGAGTCGACGGATAATGCCGAGAAGCGAAAGAGACTAGAGTGTTGTACTGTTTCTCGGGGCATGGAGAAGTGCGGTGACGAAGAGAAGGGTAATCTGGTCAAAATTGAAAGCGAGGAGGGGGTTTCGAGTCTAACGATTTCCTCCAAGTGTCCGTCCACGTCAGCACCTGTACTGAATCCTGACGCCAAGTTCGGAATGGTTTCCGTTTGTGGAAGACGACGAGATATGGAAGACGCCGTCTCTATCCACCCCTCCTTTTGCCGCGGTGAGTCCGGTGACCAAGAAACTGCCAACAATCTTCACTACTACGCCGTGTACGACGGCCACGGCTGCTCTCATGTGGCGACGAGGTGTAGGGAGCGGTTCCATGAGGTGGTGAAGGAGGAGATAGAAAACAAGGCTCTTCATGAGTGGCGGAGCGCGTTGGGGAGGAGCTTCACGCGCATGGACATGGAGGTGACTGCGTGGACCCAAGACACCGTCGCCGGAGCCAACTGTCGGTGCGAGCTTCAAATGCCGGAGTGCGAGGCCGTCGGATCCACCGCCGTTGTCGCTATTGTCACGCCCGATAAGATTGTCGTCGCTAACTGTGGTGATTCCAGAGCCGTCCTCTGCCGTGACGGCAAGGCCGTACCTCTTTCCTCCGATCACAAGGTAATTCTCTTCTTTACGCTGATAATGATAAAAAAAGTTGGTAACAAAAACTGGTTAAAGATTTGTTCGTTATTCCGTGGAAAACGTGAACAAAATTTATACCATAGTATTGTTAAAAGAAGTCCTTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005794 GO:0005801 GO:0005829 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006996 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009628 GO:0009657 GO:0009658 GO:0009719 GO:0009725 GO:0009737 GO:0009787 GO:0009788 GO:0009791 GO:0009937 GO:0009939 GO:0009966 GO:0009967 GO:0009968 GO:0009987 GO:0010029 GO:0010030 GO:0010033 GO:0010035 GO:0010118 GO:0010150 GO:0010154 GO:0010162 GO:0010431 GO:0010646 GO:0010647 GO:0010648 GO:0012505 GO:0016020 GO:0016043 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0021700 GO:0022414 GO:0022611 GO:0023051 GO:0023056 GO:0023057 GO:0031090 GO:0032501 GO:0032502 GO:0032504 GO:0033106 GO:0033993 GO:0036211 GO:0042221 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048366 GO:0048367 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048581 GO:0048582 GO:0048583 GO:0048584 GO:0048585 GO:0048608 GO:0048609 GO:0048731 GO:0048827 GO:0048838 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051094 GO:0051239 GO:0051240 GO:0051241 GO:0061458 GO:0065007 GO:0071695 GO:0071704 GO:0071840 GO:0080050 GO:0090693 GO:0097305 GO:0097438 GO:0098588 GO:0099402 GO:0140096 GO:1900140 GO:1901419 GO:1901420 GO:1901564 GO:1901700 GO:1902039 GO:1905957 GO:1905958 GO:2000026 GO:2000033 GO:2000034 GO:2000241 GO:2000242 GO:2000692
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 ko04931 map04016 map04075 map04931
Pfam Domains
Protein Families
PP2C

Protein Analysis

306

Amino Acids

33.96

Weight (kDa)

8.29

Isoelectric Point (pI)

60.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP2C PF00481 108 - 264 3.8e-27 Protein phosphatase 2C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010786)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G29380 AT5G59220 AT5G59220
fragaria_vesca FvH4_3g37010 FvH4_3g37010
malus_domestica MD03G1085400.v1.1 MD11G1093100.v1.1
prunus_persica Prupe.6G068800_v2.0.a1
pyrus_communis pycom03g06750 pycom11g07870
rosa_chinensis RchiOBHm_Chr5g0066401
rosa_laevigata RLG00000035860
rosa_multiflora Rmu_ssc0000249.1_g000014
rosa_roxburghii Rroxscaffold_1G00014640
rosa_rugosa Rorug05G0378000
rosa_samantha Rh5AG436700 Rh5BG452900 Rh5CG475300 Rh5DG468100
rosa_wichuraiana Rw5G040890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 508
AccBSI CCGCTC 1 cut(s) 496
AccI GTMKAC 1 cut(s) 140
AccII CGCG 4 cut(s) 50, 399, 557, 577
AclWI GGATC 2 cut(s) 666, 679
AcoI YGGCCR 1 cut(s) 457
AcsI RAATTY 1 cut(s) 883
AcyI GRCGYC 3 cut(s) 41, 318, 369
AfaI GTAC 4 cut(s) 181, 306, 452, 768
AfiI CCNNNNNNNGG 3 cut(s) 78, 508, 633
AgsI TTSAA 2 cut(s) 242, 647
AjiI CACGTC 1 cut(s) 294
AloI GAACNNNNNNTCC 2 cut(s) 26, 58
AluBI AGCT 3 cut(s) 63, 570, 643
AluI AGCT 3 cut(s) 63, 570, 643
Alw21I GWGCWC 1 cut(s) 65
Alw26I GTCTC 4 cut(s) 50, 118, 160, 379
AlwI GGATC 2 cut(s) 666, 679
AlwNI CAGNNNCTG 1 cut(s) 302
Ama87I CYCGRG 1 cut(s) 189
AoxI GGCC 5 cut(s) 69, 126, 457, 663, 762
ApeKI GCWGC 1 cut(s) 465
ApoI RAATTY 1 cut(s) 883
ArsI GACNNNNNNTTYG 2 cut(s) 308, 340
Asp700I GAANNNNTTC 1 cut(s) 334
AspLEI GCGC 3 cut(s) 50, 557, 579
AspS9I GGNCC 3 cut(s) 69, 127, 603
AsuHPI GGTGA 6 cut(s) 221, 413, 422, 523, 604, 740
AvaI CYCGRG 1 cut(s) 189
AvaII GGWCC 1 cut(s) 603
BamHI GGATCC 1 cut(s) 671
BanII GRGCYC 1 cut(s) 65
BbsI GAAGAC 2 cut(s) 355, 372
Bbv12I GWGCWC 1 cut(s) 65
BbvI GCAGC 1 cut(s) 452
BccI CCATC 1 cut(s) 82
BcoDI GTCTC 4 cut(s) 50, 118, 160, 379
BfaI CTAG 2 cut(s) 75, 170
BglI GCCNNNNNGGC 1 cut(s) 756
BisI GCNGC 4 cut(s) 72, 126, 397, 466
BlsI GCNGC 4 cut(s) 73, 127, 398, 467
Bme18I GGWCC 1 cut(s) 603
BmeT110I CYCGRG 1 cut(s) 189
BmgBI CACGTC 1 cut(s) 294
BmgT120I GGNCC 3 cut(s) 69, 127, 603
BmiI GGNNCC 5 cut(s) 129, 500, 605, 625, 673
BpiI GAAGAC 2 cut(s) 355, 372
BplI GAGNNNNNCTC 4 cut(s) 47, 79, 729, 761
BsaBI GATNNNNATC 1 cut(s) 92
BsaHI GRCGYC 3 cut(s) 41, 318, 369
BsaJI CCNNGG 3 cut(s) 397, 460, 865
BsaWI WCCGGW 1 cut(s) 407
Bsc4I CCNNNNNNNGG 3 cut(s) 78, 508, 633
Bse1I ACTGG 1 cut(s) 845
Bse8I GATNNNNATC 1 cut(s) 92
BseDI CCNNGG 3 cut(s) 397, 460, 865
BseGI GGATG 1 cut(s) 93
BseJI GATNNNNATC 1 cut(s) 92
BseLI CCNNNNNNNGG 3 cut(s) 78, 508, 633
BseNI ACTGG 1 cut(s) 845
BseRI GAGGAG 4 cut(s) 97, 263, 533, 580
BseXI GCAGC 1 cut(s) 452
Bsh1236I CGCG 4 cut(s) 50, 399, 557, 577
BshFI GGCC 5 cut(s) 71, 128, 459, 665, 764
BsiHKAI GWGCWC 1 cut(s) 65
BsiHKCI CYCGRG 1 cut(s) 189
BsiSI CCGG 4 cut(s) 117, 408, 621, 653
BslI CCNNNNNNNGG 3 cut(s) 78, 508, 633
BsmAI GTCTC 4 cut(s) 50, 118, 160, 379
BsmBI CGTCTC 3 cut(s) 50, 118, 379
BsnI GGCC 5 cut(s) 71, 128, 459, 665, 764
BsoBI CYCGRG 1 cut(s) 189
Bsp1286I GDGCHC 1 cut(s) 65
Bsp143I GATC 3 cut(s) 93, 671, 781
BspANI GGCC 5 cut(s) 71, 128, 459, 665, 764
BspFNI CGCG 4 cut(s) 50, 399, 557, 577
BspHI TCATGA 1 cut(s) 541
BspLI GGNNCC 5 cut(s) 129, 500, 605, 625, 673
BspPI GGATC 2 cut(s) 666, 679
BspQI GCTCTTC 1 cut(s) 543
BsrBI CCGCTC 1 cut(s) 496
BsrI ACTGG 1 cut(s) 845
BssECI CCNNGG 3 cut(s) 397, 460, 865
BssMI GATC 3 cut(s) 93, 671, 781
BssNI GRCGYC 3 cut(s) 41, 318, 369
Bst4CI ACNGT 4 cut(s) 184, 616, 632, 725
Bst6I CTCTTC 3 cut(s) 210, 543, 803
BstACI GRCGYC 3 cut(s) 41, 318, 369
BstC8I GCNNGC 2 cut(s) 52, 641
BstDSI CCRYGG 3 cut(s) 397, 460, 865
BstEII GGTNACC 1 cut(s) 410
BstF5I GGATG 1 cut(s) 93
BstFNI CGCG 4 cut(s) 50, 399, 557, 577
BstHHI GCGC 3 cut(s) 50, 557, 579
BstKTI GATC 3 cut(s) 96, 674, 784
BstMAI GTCTC 4 cut(s) 50, 118, 160, 379
BstMBI GATC 3 cut(s) 93, 671, 781
BstMWI GCNNNNNNNGC 8 cut(s) 47, 60, 131, 465, 576, 649, 686, 756
BstPI GGTNACC 1 cut(s) 410
BstUI CGCG 4 cut(s) 50, 399, 557, 577
BstV1I GCAGC 1 cut(s) 452
BstV2I GAAGAC 2 cut(s) 355, 372
BstX2I RGATCY 1 cut(s) 671
BstYI RGATCY 1 cut(s) 671
BsuRI GGCC 5 cut(s) 71, 128, 459, 665, 764
BtgI CCRYGG 3 cut(s) 397, 460, 865
BtrI CACGTC 1 cut(s) 294
BtsCI GGATG 1 cut(s) 93
Cac8I GCNNGC 2 cut(s) 52, 641
CaiI CAGNNNCTG 1 cut(s) 302
CciI TCATGA 1 cut(s) 541
CfoI GCGC 3 cut(s) 50, 557, 579
Cfr13I GGNCC 3 cut(s) 69, 127, 603
Cfr42I CCGCGG 1 cut(s) 400
CseI GACGC 3 cut(s) 30, 326, 377
Csp6I GTAC 4 cut(s) 180, 305, 451, 767
CspCI CAANNNNNGTGG 2 cut(s) 664, 699
CviAII CATG 6 cut(s) 196, 473, 503, 542, 580, 586
CviQI GTAC 4 cut(s) 180, 305, 451, 767
DpnI GATC 3 cut(s) 95, 673, 783
DpnII GATC 3 cut(s) 93, 671, 781
EaeI YGGCCR 1 cut(s) 457
Eam1104I CTCTTC 3 cut(s) 210, 543, 803
EarI CTCTTC 3 cut(s) 210, 543, 803
EciI GGCGGA 3 cut(s) 20, 94, 565
Ecl136II GAGCTC 1 cut(s) 63
Eco24I GRGCYC 1 cut(s) 65
Eco47I GGWCC 1 cut(s) 603
Eco53kI GAGCTC 1 cut(s) 63
Eco88I CYCGRG 1 cut(s) 189
Eco91I GGTNACC 1 cut(s) 410
EcoICRI GAGCTC 1 cut(s) 63
EcoO65I GGTNACC 1 cut(s) 410
EcoT38I GRGCYC 1 cut(s) 65
Esp3I CGTCTC 3 cut(s) 50, 118, 379
FaeI CATG 6 cut(s) 199, 476, 506, 545, 583, 589
FaiI YATR 9 cut(s) 197, 362, 474, 504, 543, 581, 587, 889, 894
FalI AAGNNNNNCTT 1 cut(s) 898
FatI CATG 6 cut(s) 195, 472, 502, 541, 579, 585
FblI GTMKAC 1 cut(s) 140
Fnu4HI GCNGC 4 cut(s) 72, 126, 397, 466
FokI GGATG 1 cut(s) 100
FriOI GRGCYC 1 cut(s) 65
Fsp4HI GCNGC 4 cut(s) 72, 126, 397, 466
FspBI CTAG 2 cut(s) 75, 170
GlaI GCGC 3 cut(s) 49, 556, 578
GluI GCNGC 4 cut(s) 72, 126, 397, 466
HaeIII GGCC 5 cut(s) 71, 128, 459, 665, 764
HapII CCGG 4 cut(s) 117, 408, 621, 653
HgaI GACGC 3 cut(s) 30, 326, 377
HhaI GCGC 3 cut(s) 50, 557, 579
Hin1I GRCGYC 3 cut(s) 41, 318, 369
Hin1II CATG 6 cut(s) 199, 476, 506, 545, 583, 589
Hin6I GCGC 3 cut(s) 48, 555, 577
HinP1I GCGC 3 cut(s) 48, 555, 577
HincII GTYRAC 1 cut(s) 141
HindII GTYRAC 1 cut(s) 141
HinfI GANTC 5 cut(s) 137, 262, 310, 404, 731
HpaII CCGG 4 cut(s) 117, 408, 621, 653
HphI GGTGA 6 cut(s) 221, 413, 422, 523, 604, 740
Hpy166II GTNNAC 5 cut(s) 141, 291, 451, 603, 878
Hpy188I TCNGA 4 cut(s) 329, 671, 781, 920
Hpy188III TCNNGA 3 cut(s) 314, 542, 735
Hpy8I GTNNAC 5 cut(s) 141, 291, 451, 603, 878
Hpy99I CGWCG 7 cut(s) 145, 357, 458, 484, 620, 671, 719
HpyAV CCTTC 2 cut(s) 214, 508
HpyCH4III ACNGT 4 cut(s) 184, 616, 632, 725
HpyCH4IV ACGT 2 cut(s) 293, 874
HpyF10VI GCNNNNNNNGC 8 cut(s) 47, 60, 131, 465, 576, 649, 686, 756
HpySE526I ACGT 2 cut(s) 293, 874
Hsp92I GRCGYC 3 cut(s) 41, 318, 369
Hsp92II CATG 6 cut(s) 199, 476, 506, 545, 583, 589
HspAI GCGC 3 cut(s) 48, 555, 577
KspI CCGCGG 1 cut(s) 400
Kzo9I GATC 3 cut(s) 93, 671, 781
LguI GCTCTTC 1 cut(s) 543
LmnI GCTCC 4 cut(s) 493, 552, 567, 623
Lsp1109I GCAGC 1 cut(s) 452
MaeI CTAG 2 cut(s) 75, 170
MaeII ACGT 2 cut(s) 293, 874
MaeIII GTNAC 7 cut(s) 14, 209, 410, 592, 694, 752, 830
MalI GATC 3 cut(s) 95, 673, 783
MbiI CCGCTC 1 cut(s) 496
MboI GATC 3 cut(s) 93, 671, 781
MboII GAAGA 6 cut(s) 227, 360, 377, 425, 530, 790
MflI RGATCY 1 cut(s) 671
MhlI GDGCHC 1 cut(s) 65
MluCI AATT 3 cut(s) 237, 792, 883
MlyI GAGTC 3 cut(s) 146, 271, 413
MmeI TCCRAC 1 cut(s) 649
MroXI GAANNNNTTC 1 cut(s) 334
MseI TTAA 3 cut(s) 105, 845, 903
MslI CAYNNNNRTG 3 cut(s) 578, 584, 590
MspA1I CMGCKG 1 cut(s) 399
MspI CCGG 4 cut(s) 117, 408, 621, 653
MvnI CGCG 4 cut(s) 50, 399, 557, 577
MwoI GCNNNNNNNGC 8 cut(s) 47, 60, 131, 465, 576, 649, 686, 756
NdeII GATC 3 cut(s) 93, 671, 781
NlaIII CATG 6 cut(s) 199, 476, 506, 545, 583, 589
NlaIV GGNNCC 5 cut(s) 129, 500, 605, 625, 673
NmeAIII GCCGAG 2 cut(s) 160, 178
NmuCI GTSAC 5 cut(s) 209, 410, 592, 694, 752
PagI TCATGA 1 cut(s) 541
PciSI GCTCTTC 1 cut(s) 543
PcsI WCGNNNNNNNCGW 4 cut(s) 117, 266, 450, 762
PdmI GAANNNNTTC 1 cut(s) 334
PfeI GAWTC 2 cut(s) 310, 731
PflFI GACNNNGTC 2 cut(s) 371, 614
PflMI CCANNNNNTGG 1 cut(s) 508
PkrI GCNGC 4 cut(s) 73, 127, 398, 467
PleI GAGTC 3 cut(s) 145, 270, 412
PpsI GAGTC 3 cut(s) 145, 270, 412
Psp124BI GAGCTC 1 cut(s) 65
PspEI GGTNACC 1 cut(s) 410
PspN4I GGNNCC 5 cut(s) 129, 500, 605, 625, 673
PspPI GGNCC 3 cut(s) 69, 127, 603
PstNI CAGNNNCTG 1 cut(s) 302
PsuI RGATCY 1 cut(s) 671
PsyI GACNNNGTC 2 cut(s) 371, 614
RsaI GTAC 4 cut(s) 181, 306, 452, 768
RsaNI GTAC 4 cut(s) 180, 305, 451, 767
RseI CAYNNNNRTG 3 cut(s) 578, 584, 590
SacI GAGCTC 1 cut(s) 65
SacII CCGCGG 1 cut(s) 400
SalI GTCGAC 1 cut(s) 139
SapI GCTCTTC 1 cut(s) 543
SaqAI TTAA 3 cut(s) 105, 845, 903
SatI GCNGC 4 cut(s) 72, 126, 397, 466
Sau3AI GATC 3 cut(s) 93, 671, 781
Sau96I GGNCC 3 cut(s) 69, 127, 603
SchI GAGTC 3 cut(s) 146, 271, 413
SduI GDGCHC 1 cut(s) 65
Sfr303I CCGCGG 1 cut(s) 400
SgrBI CCGCGG 1 cut(s) 400
SinI GGWCC 1 cut(s) 603
SmiMI CAYNNNNRTG 3 cut(s) 578, 584, 590
Sse9I AATT 3 cut(s) 237, 792, 883
SspMI CTAG 2 cut(s) 75, 170
SstI GAGCTC 1 cut(s) 65
TaaI ACNGT 4 cut(s) 184, 616, 632, 725
TaiI ACGT 2 cut(s) 296, 877
TaqI TCGA 2 cut(s) 140, 260
TasI AATT 3 cut(s) 237, 792, 883
TatI WGTACW 2 cut(s) 179, 304
TauI GCSGC 3 cut(s) 74, 128, 399
TfiI GAWTC 2 cut(s) 310, 731
Tru1I TTAA 3 cut(s) 105, 845, 903
Tru9I TTAA 3 cut(s) 105, 845, 903
TseFI GTSAC 5 cut(s) 209, 410, 592, 694, 752
TseI GCWGC 1 cut(s) 465
Tsp45I GTSAC 5 cut(s) 209, 410, 592, 694, 752
TspDTI ATGAA 1 cut(s) 530
TspGWI ACGGA 4 cut(s) 158, 276, 328, 854
Tth111I GACNNNGTC 2 cut(s) 371, 614
Van91I CCANNNNNTGG 1 cut(s) 508
VpaK11BI GGWCC 1 cut(s) 603
XapI RAATTY 1 cut(s) 883
XcmI CCANNNNNNNNNTGG 1 cut(s) 328
XmiI GTMKAC 1 cut(s) 140
XmnI GAANNNNTTC 1 cut(s) 334
XspI CTAG 2 cut(s) 75, 170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.