Rorug05G0378000

phosphatase 2C

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0010786
Physical Location & Seq
Forward (+)
51222491 .. 51224676
2186 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0378000.1

Sequence Viewer

Length: 1329 bp
ATGACGATGGTGAAATTTCCTAAGCGCTACTTAATCGTCATATTGACCTTCATCTGCACGTCTGTTTGCTATATAGAACGGGTCGGGTTTTCGATTGCATATACTGTTGCTGCCGATGCTGCAGGGGTAAACCAATCGAGTAAAGGCACAATTCTTTCTACATTCTATTATGGTTATGCTTGTTCACAAGTACCTGGAGGTTGGGCAGCTCAGAAAATTGGGGGAAGGAAGGTTCTTCTTCTTTCATTTGTGTTATGGTCAGCTACGTGTGCATTAGTTCCTCTAGACCCCAATCGAATCTTTGTCTTGGTGATTGCTCGGTTGCTTGTGGGTGTTGCACAAGGATTCATTTTCCCCTCAATCCACACAGTTCTAGCTCAGTGGGTTCCACCACATGAAAGATCCAGATCTGTTTCTCTTACTACTTCTGGTATGTACCTAGGAGCAGCTGCAGGAATGCTTCTCCTTCCAAGCCTTGTGAAGTACAGAGGCCCCCAATCCGTATTTCTTGCTGAGGCAGCATTAGGTGCCATGTGGTCTTTGCTGTGGTTCAAGTATGCCAGTGATCCACCTTCCTCTCAACATCCAAAAGCGACAGCTGCTGGTTTTGGGGAATCTTTGTTGCCGACCAAAGGAAACCAAAAGTTGAAAGTAGAGAATGGAGGAAGTTCCACTAGAACTGCCAAGATCCCATGGAAGAGAATTTTACTCAGTTTGCCAGTTTGGGCAATCGTGGTTAATAATTTCACGTTCCATTATGCTTTATACGTGTTGATGAACTGGCTGCCCACATACTTTGAATTAGGCCTCCAACTTAGCCTTCAGGAAATGGGTTCTTCTAAGATGTTGCCGTATCTCAACATGTTTATTTTCTCAAATATAGGTGGGGTGGTAGCTGACCACTTAGTCACCAAGAGAATATTGTCTGTGACTAATACTCGCAAGTTCTTGAACACTGTTGGTTTCATAGTAGCTTCTCTTGCATTGATGGCAATTCCCATCTTCCGAACTTCCGATGGGGCTGTCTTTTGTTCTTCTGTGGCTCTTGGTTTCTTGGCACTCGGGAGGGCTGGTTTTGCAGTGAATCACATGGATATTGCCCCGAGATATGCTGGTATTGTAATGGGAGTTTCAAACACTGCCGGTACCTTAGCTGGCATTATTGGAGTTGATCTAACTGGCAAGCTTCTTGAAGCTGCGAGAACTGCTGATTCAAGTCTTTCAAGTCCAGAGAGCTGGAGACTGGTGTTTTTAATTCCAGGTCTGCTCTGCGTTTTCAGTTCTTTTGTATTTGTACTATTCTCAACAGGGGAGAGAATTTTTGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005794 GO:0005801 GO:0005829 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006996 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0009414 GO:0009415 GO:0009628 GO:0009657 GO:0009658 GO:0009719 GO:0009725 GO:0009737 GO:0009787 GO:0009788 GO:0009791 GO:0009937 GO:0009939 GO:0009966 GO:0009967 GO:0009968 GO:0009987 GO:0010029 GO:0010030 GO:0010033 GO:0010035 GO:0010118 GO:0010150 GO:0010154 GO:0010162 GO:0010431 GO:0010646 GO:0010647 GO:0010648 GO:0012505 GO:0016020 GO:0016043 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0021700 GO:0022414 GO:0022611 GO:0023051 GO:0023056 GO:0023057 GO:0031090 GO:0032501 GO:0032502 GO:0032504 GO:0033106 GO:0033993 GO:0036211 GO:0042221 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048366 GO:0048367 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048581 GO:0048582 GO:0048583 GO:0048584 GO:0048585 GO:0048608 GO:0048609 GO:0048731 GO:0048827 GO:0048838 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051094 GO:0051239 GO:0051240 GO:0051241 GO:0061458 GO:0065007 GO:0071695 GO:0071704 GO:0071840 GO:0080050 GO:0090693 GO:0097305 GO:0097438 GO:0098588 GO:0099402 GO:0140096 GO:1900140 GO:1901419 GO:1901420 GO:1901564 GO:1901700 GO:1902039 GO:1905957 GO:1905958 GO:2000026 GO:2000033 GO:2000034 GO:2000241 GO:2000242 GO:2000692
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 ko04931 map04016 map04075 map04931
Pfam Domains
Protein Families
PP2C

Protein Analysis

442

Amino Acids

47.85

Weight (kDa)

9.68

Isoelectric Point (pI)

35.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MFS_1 PF07690 17 - 389 3.5e-50 Major Facilitator Superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010786)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G29380 AT5G59220 AT5G59220
fragaria_vesca FvH4_3g37010 FvH4_3g37010
malus_domestica MD03G1085400.v1.1 MD11G1093100.v1.1
prunus_persica Prupe.6G068800_v2.0.a1
pyrus_communis pycom03g06750 pycom11g07870
rosa_chinensis RchiOBHm_Chr5g0066401
rosa_laevigata RLG00000035860
rosa_multiflora Rmu_ssc0000249.1_g000014
rosa_roxburghii Rroxscaffold_1G00014640
rosa_rugosa Rorug05G0378000
rosa_samantha Rh5AG436700 Rh5BG452900 Rh5CG475300 Rh5DG468100
rosa_wichuraiana Rw5G040890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 905
Acc65I GGTACC 1 cut(s) 1145
AccB1I GGYRCC 2 cut(s) 527, 1145
AclWI GGATC 3 cut(s) 396, 560, 682
AcsI RAATTY 3 cut(s) 14, 702, 1317
AcuI CTGAAG 1 cut(s) 806
AfaI GTAC 5 cut(s) 192, 437, 485, 1147, 1296
AfeI AGCGCT 1 cut(s) 26
AfiI CCNNNNNNNGG 1 cut(s) 632
AflIII ACRYGT 3 cut(s) 266, 768, 861
AgsI TTSAA 8 cut(s) 553, 649, 800, 952, 1134, 1193, 1215, 1224
AjiI CACGTC 1 cut(s) 60
AjnI CCWGG 2 cut(s) 193, 1258
AjuI GAANNNNNNNTTGG 4 cut(s) 489, 521, 804, 836
AloI GAACNNNNNNTCC 2 cut(s) 216, 248
Alw26I GTCTC 1 cut(s) 1234
AlwI GGATC 3 cut(s) 396, 560, 682
AlwNI CAGNNNCTG 1 cut(s) 602
Ama87I CYCGRG 2 cut(s) 1061, 1102
Aor51HI AGCGCT 1 cut(s) 26
AoxI GGCC 2 cut(s) 490, 805
ApeKI GCWGC 9 cut(s) 110, 119, 206, 446, 449, 518, 599, 784, 1196
ApoI RAATTY 3 cut(s) 14, 702, 1317
Asp718I GGTACC 1 cut(s) 1145
AspA2I CCTAGG 1 cut(s) 439
AspLEI GCGC 1 cut(s) 27
AspS9I GGNCC 1 cut(s) 491
AsuHPI GGTGA 3 cut(s) 22, 322, 901
AvaI CYCGRG 2 cut(s) 1061, 1102
AvrII CCTAGG 1 cut(s) 439
BanI GGYRCC 2 cut(s) 527, 1145
BbvCI CCTCAGC 1 cut(s) 513
BbvI GCAGC 9 cut(s) 97, 106, 218, 436, 458, 530, 586, 771, 1183
BccI CCATC 3 cut(s) 982, 1007, 1010
BceAI ACGGC 1 cut(s) 835
BciT130I CCWGG 2 cut(s) 195, 1260
BcoDI GTCTC 1 cut(s) 1234
BfaI CTAG 4 cut(s) 284, 374, 440, 675
BfmI CTRYAG 2 cut(s) 120, 450
BfoI RGCGCY 1 cut(s) 28
BglII AGATCT 1 cut(s) 407
BisI GCNGC 9 cut(s) 111, 120, 207, 447, 450, 519, 600, 785, 1197
BlnI CCTAGG 1 cut(s) 439
BlsI GCNGC 9 cut(s) 112, 121, 208, 448, 451, 520, 601, 786, 1198
Bme1390I CCNGG 2 cut(s) 195, 1260
BmeT110I CYCGRG 2 cut(s) 1061, 1102
BmgBI CACGTC 1 cut(s) 60
BmgT120I GGNCC 1 cut(s) 491
BmiI GGNNCC 4 cut(s) 387, 493, 529, 1147
BmrFI CCNGG 2 cut(s) 195, 1260
BmsI GCATC 1 cut(s) 106
BpmI CTGGAG 2 cut(s) 216, 1258
Bpu10I CCTNAGC 3 cut(s) 21, 513, 1150
BsaAI YACGTR 2 cut(s) 267, 769
BsaBI GATNNNNATC 1 cut(s) 406
BsaJI CCNNGG 2 cut(s) 439, 692
BsaXI ACNNNNNCTCC 2 cut(s) 1057, 1087
Bsc4I CCNNNNNNNGG 1 cut(s) 632
Bse118I RCCGGY 1 cut(s) 1142
Bse1I ACTGG 5 cut(s) 561, 719, 785, 1183, 1248
Bse8I GATNNNNATC 1 cut(s) 406
BseBI CCWGG 2 cut(s) 195, 1260
BseDI CCNNGG 2 cut(s) 439, 692
BseGI GGATG 1 cut(s) 583
BseJI GATNNNNATC 1 cut(s) 406
BseLI CCNNNNNNNGG 1 cut(s) 632
BseMII CTCAG 4 cut(s) 224, 392, 504, 724
BseNI ACTGG 5 cut(s) 561, 719, 785, 1183, 1248
BseXI GCAGC 9 cut(s) 97, 106, 218, 436, 458, 530, 586, 771, 1183
BsgI GTGCAG 1 cut(s) 40
BshFI GGCC 2 cut(s) 492, 807
BshNI GGYRCC 2 cut(s) 527, 1145
BsiHKCI CYCGRG 2 cut(s) 1061, 1102
BsiSI CCGG 1 cut(s) 1143
BslI CCNNNNNNNGG 1 cut(s) 632
BsmAI GTCTC 1 cut(s) 1234
BsmI GAATGC 1 cut(s) 462
BsnI GGCC 2 cut(s) 492, 807
BsoBI CYCGRG 2 cut(s) 1061, 1102
Bsp143I GATC 5 cut(s) 401, 407, 565, 687, 1171
Bsp19I CCATGG 1 cut(s) 692
BspANI GGCC 2 cut(s) 492, 807
BspCNI CTCAG 4 cut(s) 223, 391, 505, 723
BspLI GGNNCC 4 cut(s) 387, 493, 529, 1147
BspMAI CTGCAG 2 cut(s) 124, 454
BspPI GGATC 3 cut(s) 396, 560, 682
BspT107I GGYRCC 2 cut(s) 527, 1145
BsrFI RCCGGY 1 cut(s) 1142
BsrI ACTGG 5 cut(s) 561, 719, 785, 1183, 1248
BssAI RCCGGY 1 cut(s) 1142
BssECI CCNNGG 2 cut(s) 439, 692
BssMI GATC 5 cut(s) 401, 407, 565, 687, 1171
BssT1I CCWWGG 2 cut(s) 439, 692
Bst2UI CCWGG 2 cut(s) 195, 1260
Bst4CI ACNGT 3 cut(s) 106, 370, 958
Bst6I CTCTTC 1 cut(s) 692
BstAPI GCANNNNNTGC 1 cut(s) 527
BstBAI YACGTR 2 cut(s) 267, 769
BstC8I GCNNGC 2 cut(s) 1156, 1184
BstDEI CTNAG 9 cut(s) 21, 210, 378, 513, 710, 815, 840, 904, 1150
BstDSI CCRYGG 1 cut(s) 692
BstF5I GGATG 1 cut(s) 583
BstH2I RGCGCY 1 cut(s) 28
BstHHI GCGC 1 cut(s) 27
BstKTI GATC 5 cut(s) 404, 410, 568, 690, 1174
BstMAI GTCTC 1 cut(s) 1234
BstMBI GATC 5 cut(s) 401, 407, 565, 687, 1171
BstNI CCWGG 2 cut(s) 195, 1260
BstNSI RCATGY 1 cut(s) 865
BstSCI CCNGG 2 cut(s) 193, 1258
BstSFI CTRYAG 2 cut(s) 120, 450
BstV1I GCAGC 9 cut(s) 97, 106, 218, 436, 458, 530, 586, 771, 1183
BstX2I RGATCY 3 cut(s) 401, 407, 687
BstXI CCANNNNNNTGG 1 cut(s) 1236
BstYI RGATCY 3 cut(s) 401, 407, 687
BsuRI GGCC 2 cut(s) 492, 807
BtgI CCRYGG 1 cut(s) 692
BtrI CACGTC 1 cut(s) 60
BtsCI GGATG 1 cut(s) 583
BtsI GCAGTG 2 cut(s) 1086, 1137
BtsIMutI CAGTG 5 cut(s) 386, 568, 954, 1086, 1137
Cac8I GCNNGC 2 cut(s) 1156, 1184
CaiI CAGNNNCTG 1 cut(s) 602
CfoI GCGC 1 cut(s) 27
Cfr10I RCCGGY 1 cut(s) 1142
Cfr13I GGNCC 1 cut(s) 491
Csp6I GTAC 5 cut(s) 191, 436, 484, 1146, 1295
CspCI CAANNNNNGTGG 2 cut(s) 778, 813
CviAII CATG 5 cut(s) 395, 532, 693, 862, 1090
CviQI GTAC 5 cut(s) 191, 436, 484, 1146, 1295
DdeI CTNAG 9 cut(s) 21, 210, 378, 513, 710, 815, 840, 904, 1150
DpnI GATC 5 cut(s) 403, 409, 567, 689, 1173
DpnII GATC 5 cut(s) 401, 407, 565, 687, 1171
DrdI GACNNNNNNGTC 1 cut(s) 905
DseDI GACNNNNNNGTC 1 cut(s) 905
Eam1104I CTCTTC 1 cut(s) 692
EarI CTCTTC 1 cut(s) 692
Eco130I CCWWGG 2 cut(s) 439, 692
Eco147I AGGCCT 1 cut(s) 807
Eco47III AGCGCT 1 cut(s) 26
Eco57I CTGAAG 1 cut(s) 806
Eco88I CYCGRG 2 cut(s) 1061, 1102
EcoO109I RGGNCCY 1 cut(s) 491
EcoRII CCWGG 2 cut(s) 193, 1258
EcoT14I CCWWGG 2 cut(s) 439, 692
ErhI CCWWGG 2 cut(s) 439, 692
FaeI CATG 5 cut(s) 398, 535, 696, 865, 1093
FalI AAGNNNNNCTT 2 cut(s) 14, 46
FatI CATG 5 cut(s) 394, 531, 692, 861, 1089
Fnu4HI GCNGC 9 cut(s) 111, 120, 207, 447, 450, 519, 600, 785, 1197
FokI GGATG 1 cut(s) 570
Fsp4HI GCNGC 9 cut(s) 111, 120, 207, 447, 450, 519, 600, 785, 1197
FspBI CTAG 4 cut(s) 284, 374, 440, 675
GlaI GCGC 1 cut(s) 26
GluI GCNGC 9 cut(s) 111, 120, 207, 447, 450, 519, 600, 785, 1197
GsuI CTGGAG 2 cut(s) 216, 1258
HaeII RGCGCY 1 cut(s) 28
HaeIII GGCC 2 cut(s) 492, 807
HapII CCGG 1 cut(s) 1143
HhaI GCGC 1 cut(s) 27
Hin1II CATG 5 cut(s) 398, 535, 696, 865, 1093
Hin6I GCGC 1 cut(s) 25
HinP1I GCGC 1 cut(s) 25
HindIII AAGCTT 1 cut(s) 1184
HinfI GANTC 5 cut(s) 297, 345, 614, 1084, 1211
HpaII CCGG 1 cut(s) 1143
HphI GGTGA 3 cut(s) 22, 322, 901
Hpy166II GTNNAC 2 cut(s) 130, 185
Hpy188I TCNGA 3 cut(s) 213, 1007, 1015
Hpy188III TCNNGA 7 cut(s) 284, 405, 824, 949, 1063, 1190, 1229
Hpy8I GTNNAC 2 cut(s) 130, 185
HpyAV CCTTC 6 cut(s) 58, 219, 223, 476, 582, 830
HpyCH4III ACNGT 3 cut(s) 106, 370, 958
HpyCH4IV ACGT 4 cut(s) 59, 266, 749, 768
HpyCH4V TGCA 8 cut(s) 57, 98, 122, 272, 338, 452, 983, 1079
HpyF3I CTNAG 9 cut(s) 21, 210, 378, 513, 710, 815, 840, 904, 1150
HpySE526I ACGT 4 cut(s) 59, 266, 749, 768
Hsp92II CATG 5 cut(s) 398, 535, 696, 865, 1093
HspAI GCGC 1 cut(s) 25
KpnI GGTACC 1 cut(s) 1149
Kzo9I GATC 5 cut(s) 401, 407, 565, 687, 1171
LmnI GCTCC 1 cut(s) 443
Lsp1109I GCAGC 9 cut(s) 97, 106, 218, 436, 458, 530, 586, 771, 1183
LweI GCATC 1 cut(s) 106
MaeI CTAG 4 cut(s) 284, 374, 440, 675
MaeII ACGT 4 cut(s) 59, 266, 749, 768
MaeIII GTNAC 2 cut(s) 907, 928
MalI GATC 5 cut(s) 403, 409, 567, 689, 1173
MboI GATC 5 cut(s) 401, 407, 565, 687, 1171
MboII GAAGA 6 cut(s) 227, 230, 709, 828, 994, 1026
MflI RGATCY 3 cut(s) 401, 407, 687
MluCI AATT 9 cut(s) 14, 150, 216, 702, 742, 800, 993, 1254, 1317
MmeI TCCRAC 1 cut(s) 835
MnlI CCTC 9 cut(s) 191, 291, 367, 482, 508, 586, 656, 818, 1059
MseI TTAA 3 cut(s) 32, 738, 1253
MspA1I CMGCKG 2 cut(s) 449, 599
MspI CCGG 1 cut(s) 1143
MspR9I CCNGG 2 cut(s) 195, 1260
Mva1269I GAATGC 1 cut(s) 462
MvaI CCWGG 2 cut(s) 195, 1260
NcoI CCATGG 1 cut(s) 692
NdeII GATC 5 cut(s) 401, 407, 565, 687, 1171
NlaIII CATG 5 cut(s) 398, 535, 696, 865, 1093
NlaIV GGNNCC 4 cut(s) 387, 493, 529, 1147
NmuCI GTSAC 2 cut(s) 907, 928
NspI RCATGY 1 cut(s) 865
PceI AGGCCT 1 cut(s) 807
PciI ACATGT 1 cut(s) 861
PctI GAATGC 1 cut(s) 462
PfeI GAWTC 5 cut(s) 297, 345, 614, 1084, 1211
PkrI GCNGC 9 cut(s) 112, 121, 208, 448, 451, 520, 601, 786, 1198
Ppu21I YACGTR 2 cut(s) 267, 769
PscI ACATGT 1 cut(s) 861
Psp6I CCWGG 2 cut(s) 193, 1258
PspGI CCWGG 2 cut(s) 193, 1258
PspN4I GGNNCC 4 cut(s) 387, 493, 529, 1147
PspPI GGNCC 1 cut(s) 491
PstI CTGCAG 2 cut(s) 124, 454
PstNI CAGNNNCTG 1 cut(s) 602
PsuI RGATCY 3 cut(s) 401, 407, 687
PvuII CAGCTG 2 cut(s) 449, 599
RsaI GTAC 5 cut(s) 192, 437, 485, 1147, 1296
RsaNI GTAC 5 cut(s) 191, 436, 484, 1146, 1295
SaqAI TTAA 3 cut(s) 32, 738, 1253
SatI GCNGC 9 cut(s) 111, 120, 207, 447, 450, 519, 600, 785, 1197
Sau3AI GATC 5 cut(s) 401, 407, 565, 687, 1171
Sau96I GGNCC 1 cut(s) 491
ScrFI CCNGG 2 cut(s) 195, 1260
SfaNI GCATC 1 cut(s) 106
SfcI CTRYAG 2 cut(s) 120, 450
Sse9I AATT 9 cut(s) 14, 150, 216, 702, 742, 800, 993, 1254, 1317
SseBI AGGCCT 1 cut(s) 807
SspI AATATT 1 cut(s) 921
SspMI CTAG 4 cut(s) 284, 374, 440, 675
StuI AGGCCT 1 cut(s) 807
StyD4I CCNGG 2 cut(s) 193, 1258
StyI CCWWGG 2 cut(s) 439, 692
TaaI ACNGT 3 cut(s) 106, 370, 958
TaiI ACGT 4 cut(s) 62, 269, 752, 771
TaqI TCGA 3 cut(s) 92, 137, 295
TasI AATT 9 cut(s) 14, 150, 216, 702, 742, 800, 993, 1254, 1317
TatI WGTACW 2 cut(s) 483, 1294
TfiI GAWTC 5 cut(s) 297, 345, 614, 1084, 1211
Tru1I TTAA 3 cut(s) 32, 738, 1253
Tru9I TTAA 3 cut(s) 32, 738, 1253
TscAI CASTG 5 cut(s) 386, 568, 961, 1086, 1144
TseFI GTSAC 2 cut(s) 907, 928
TseI GCWGC 9 cut(s) 110, 119, 206, 446, 449, 518, 599, 784, 1196
Tsp45I GTSAC 2 cut(s) 907, 928
TspDTI ATGAA 6 cut(s) 40, 234, 337, 411, 791, 955
TspGWI ACGGA 1 cut(s) 490
TspRI CASTG 5 cut(s) 386, 568, 961, 1086, 1144
XapI RAATTY 3 cut(s) 14, 702, 1317
XbaI TCTAGA 1 cut(s) 283
XceI RCATGY 1 cut(s) 865
XmaJI CCTAGG 1 cut(s) 439
XspI CTAG 4 cut(s) 284, 374, 440, 675
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.