DNA-binding domain
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G06920 AT2G30400 |
| fragaria_vesca | FvH4_3g40310 |
| malus_domestica | MD03G1053600.v1.1 MD11G1055200.v1.1 |
| prunus_persica | Prupe.6G042700_v2.0.a1 |
| pyrus_communis | pycom03g04250 pycom11g04500 |
| rosa_chinensis | RchiOBHm_Chr5g0072651 |
| rosa_laevigata | RLG00000036321 |
| rosa_multiflora | Rmu_co8479013.1_g000001 |
| rosa_roxburghii | Rroxscaffold_1G00008500 |
| rosa_rugosa | Rorug05G0419000 |
| rosa_samantha | Rh5AG476000 Rh5BG496100 Rh5CG519900 Rh5DG508600 |
| rosa_wichuraiana | Rw5G044200 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 656 |
| AciI | CCGC | 2 cut(s) | 548, 775 |
| AclWI | GGATC | 1 cut(s) | 779 |
| AcsI | RAATTY | 5 cut(s) | 21, 437, 573, 679, 690 |
| AfaI | GTAC | 3 cut(s) | 523, 620, 706 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 656 |
| AgsI | TTSAA | 8 cut(s) | 319, 374, 437, 451, 579, 695, 889, 944 |
| AjiI | CACGTC | 1 cut(s) | 67 |
| AluBI | AGCT | 9 cut(s) | 58, 98, 180, 188, 357, 473, 518, 759, 845 |
| AluI | AGCT | 9 cut(s) | 58, 98, 180, 188, 357, 473, 518, 759, 845 |
| AlwI | GGATC | 1 cut(s) | 779 |
| ApoI | RAATTY | 5 cut(s) | 21, 437, 573, 679, 690 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 718, 797, 864 |
| AspS9I | GGNCC | 1 cut(s) | 777 |
| AsuC2I | CCSGG | 1 cut(s) | 365 |
| AsuHPI | GGTGA | 4 cut(s) | 194, 204, 469, 675 |
| AsuII | TTCGAA | 2 cut(s) | 848, 927 |
| AvaII | GGWCC | 1 cut(s) | 777 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 703, 735 |
| BbsI | GAAGAC | 1 cut(s) | 867 |
| BccI | CCATC | 3 cut(s) | 277, 567, 658 |
| BcnI | CCSGG | 1 cut(s) | 365 |
| BfaI | CTAG | 4 cut(s) | 636, 687, 723, 752 |
| Bme1390I | CCNGG | 1 cut(s) | 365 |
| Bme18I | GGWCC | 1 cut(s) | 777 |
| BmgBI | CACGTC | 1 cut(s) | 67 |
| BmgT120I | GGNCC | 1 cut(s) | 777 |
| BmiI | GGNNCC | 1 cut(s) | 50 |
| BmrFI | CCNGG | 1 cut(s) | 365 |
| BmsI | GCATC | 1 cut(s) | 21 |
| BpiI | GAAGAC | 1 cut(s) | 867 |
| Bpu14I | TTCGAA | 2 cut(s) | 848, 927 |
| BpuMI | CCSGG | 1 cut(s) | 365 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 277, 307 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 656 |
| BseGI | GGATG | 3 cut(s) | 269, 421, 915 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 656 |
| BseMII | CTCAG | 3 cut(s) | 156, 375, 714 |
| BseRI | GAGGAG | 4 cut(s) | 189, 279, 282, 285 |
| BseYI | CCCAGC | 1 cut(s) | 656 |
| BsiSI | CCGG | 1 cut(s) | 365 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 656 |
| Bsp119I | TTCGAA | 2 cut(s) | 848, 927 |
| Bsp143I | GATC | 6 cut(s) | 330, 337, 453, 728, 784, 907 |
| BspACI | CCGC | 2 cut(s) | 548, 775 |
| BspCNI | CTCAG | 3 cut(s) | 155, 376, 713 |
| BspHI | TCATGA | 1 cut(s) | 904 |
| BspLI | GGNNCC | 1 cut(s) | 50 |
| BspPI | GGATC | 1 cut(s) | 779 |
| BspT104I | TTCGAA | 2 cut(s) | 848, 927 |
| BssMI | GATC | 6 cut(s) | 330, 337, 453, 728, 784, 907 |
| Bst6I | CTCTTC | 5 cut(s) | 156, 231, 303, 405, 822 |
| BstBI | TTCGAA | 2 cut(s) | 848, 927 |
| BstC8I | GCNNGC | 3 cut(s) | 529, 533, 874 |
| BstDEI | CTNAG | 4 cut(s) | 142, 181, 384, 700 |
| BstF5I | GGATG | 3 cut(s) | 269, 421, 915 |
| BstKTI | GATC | 6 cut(s) | 333, 340, 456, 731, 787, 910 |
| BstMBI | GATC | 6 cut(s) | 330, 337, 453, 728, 784, 907 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 524 |
| BstSCI | CCNGG | 1 cut(s) | 363 |
| BstV2I | GAAGAC | 1 cut(s) | 867 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 45 |
| BtrI | CACGTC | 1 cut(s) | 67 |
| BtsCI | GGATG | 3 cut(s) | 269, 421, 915 |
| Cac8I | GCNNGC | 3 cut(s) | 529, 533, 874 |
| CciI | TCATGA | 1 cut(s) | 904 |
| Cfr13I | GGNCC | 1 cut(s) | 777 |
| CpoI | CGGWCCG | 1 cut(s) | 777 |
| Csp6I | GTAC | 3 cut(s) | 522, 619, 705 |
| CspI | CGGWCCG | 1 cut(s) | 777 |
| CviAII | CATG | 3 cut(s) | 45, 905, 920 |
| CviQI | GTAC | 3 cut(s) | 522, 619, 705 |
| DdeI | CTNAG | 4 cut(s) | 142, 181, 384, 700 |
| DpnI | GATC | 6 cut(s) | 332, 339, 455, 730, 786, 909 |
| DpnII | GATC | 6 cut(s) | 330, 337, 453, 728, 784, 907 |
| Eam1104I | CTCTTC | 5 cut(s) | 156, 231, 303, 405, 822 |
| EarI | CTCTTC | 5 cut(s) | 156, 231, 303, 405, 822 |
| Eco47I | GGWCC | 1 cut(s) | 777 |
| EcoRI | GAATTC | 2 cut(s) | 679, 690 |
| EcoT22I | ATGCAT | 1 cut(s) | 46 |
| FaeI | CATG | 3 cut(s) | 48, 908, 923 |
| FaiI | YATR | 6 cut(s) | 46, 207, 399, 603, 906, 921 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 852, 884 |
| FatI | CATG | 3 cut(s) | 44, 904, 919 |
| FokI | GGATG | 3 cut(s) | 256, 428, 902 |
| FspBI | CTAG | 4 cut(s) | 636, 687, 723, 752 |
| GsaI | CCCAGC | 1 cut(s) | 660 |
| HapII | CCGG | 1 cut(s) | 365 |
| Hin1II | CATG | 3 cut(s) | 48, 908, 923 |
| HindIII | AAGCTT | 3 cut(s) | 96, 471, 516 |
| HinfI | GANTC | 7 cut(s) | 146, 286, 344, 386, 503, 806, 889 |
| HpaII | CCGG | 1 cut(s) | 365 |
| HphI | GGTGA | 4 cut(s) | 194, 204, 469, 675 |
| Hpy188I | TCNGA | 5 cut(s) | 20, 28, 145, 733, 842 |
| Hpy188III | TCNNGA | 6 cut(s) | 341, 451, 579, 723, 752, 905 |
| HpyAV | CCTTC | 3 cut(s) | 147, 481, 875 |
| HpyCH4IV | ACGT | 1 cut(s) | 66 |
| HpyCH4V | TGCA | 3 cut(s) | 44, 311, 527 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 524 |
| HpyF3I | CTNAG | 4 cut(s) | 142, 181, 384, 700 |
| HpySE526I | ACGT | 1 cut(s) | 66 |
| Hsp92II | CATG | 3 cut(s) | 48, 908, 923 |
| Kzo9I | GATC | 6 cut(s) | 330, 337, 453, 728, 784, 907 |
| LmnI | GCTCC | 1 cut(s) | 39 |
| LpnPI | CCDG | 6 cut(s) | 378, 396, 642, 687, 787, 922 |
| LweI | GCATC | 1 cut(s) | 21 |
| MaeI | CTAG | 4 cut(s) | 636, 687, 723, 752 |
| MaeII | ACGT | 1 cut(s) | 66 |
| MaeIII | GTNAC | 1 cut(s) | 67 |
| MalI | GATC | 6 cut(s) | 332, 339, 455, 730, 786, 909 |
| MboI | GATC | 6 cut(s) | 330, 337, 453, 728, 784, 907 |
| MluCI | AATT | 6 cut(s) | 7, 21, 437, 573, 679, 690 |
| MlyI | GAGTC | 2 cut(s) | 280, 395 |
| MmeI | TCCRAC | 2 cut(s) | 198, 468 |
| Mph1103I | ATGCAT | 1 cut(s) | 46 |
| MroXI | GAANNNNTTC | 3 cut(s) | 718, 797, 864 |
| MseI | TTAA | 2 cut(s) | 276, 540 |
| MspI | CCGG | 1 cut(s) | 365 |
| MspR9I | CCNGG | 1 cut(s) | 365 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 524 |
| NciI | CCSGG | 1 cut(s) | 365 |
| NdeII | GATC | 6 cut(s) | 330, 337, 453, 728, 784, 907 |
| NlaIII | CATG | 3 cut(s) | 48, 908, 923 |
| NlaIV | GGNNCC | 1 cut(s) | 50 |
| NmeAIII | GCCGAG | 1 cut(s) | 634 |
| NmuCI | GTSAC | 1 cut(s) | 67 |
| NsiI | ATGCAT | 1 cut(s) | 46 |
| NspV | TTCGAA | 2 cut(s) | 848, 927 |
| PagI | TCATGA | 1 cut(s) | 904 |
| PdmI | GAANNNNTTC | 3 cut(s) | 718, 797, 864 |
| PfeI | GAWTC | 5 cut(s) | 146, 344, 503, 806, 889 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 656 |
| PleI | GAGTC | 2 cut(s) | 280, 394 |
| PpsI | GAGTC | 2 cut(s) | 280, 394 |
| PspFI | CCCAGC | 1 cut(s) | 656 |
| PspN4I | GGNNCC | 1 cut(s) | 50 |
| PspPI | GGNCC | 1 cut(s) | 777 |
| RsaI | GTAC | 3 cut(s) | 523, 620, 706 |
| RsaNI | GTAC | 3 cut(s) | 522, 619, 705 |
| Rsr2I | CGGWCCG | 1 cut(s) | 777 |
| RsrII | CGGWCCG | 1 cut(s) | 777 |
| SaqAI | TTAA | 2 cut(s) | 276, 540 |
| Sau3AI | GATC | 6 cut(s) | 330, 337, 453, 728, 784, 907 |
| Sau96I | GGNCC | 1 cut(s) | 777 |
| SchI | GAGTC | 2 cut(s) | 280, 395 |
| ScrFI | CCNGG | 1 cut(s) | 365 |
| SfaNI | GCATC | 1 cut(s) | 21 |
| SfuI | TTCGAA | 2 cut(s) | 848, 927 |
| SinI | GGWCC | 1 cut(s) | 777 |
| Sse9I | AATT | 6 cut(s) | 7, 21, 437, 573, 679, 690 |
| SsiI | CCGC | 2 cut(s) | 548, 775 |
| SspMI | CTAG | 4 cut(s) | 636, 687, 723, 752 |
| StyD4I | CCNGG | 1 cut(s) | 363 |
| TaiI | ACGT | 1 cut(s) | 69 |
| TaqI | TCGA | 2 cut(s) | 848, 927 |
| TasI | AATT | 6 cut(s) | 7, 21, 437, 573, 679, 690 |
| TatI | WGTACW | 1 cut(s) | 521 |
| TfiI | GAWTC | 5 cut(s) | 146, 344, 503, 806, 889 |
| Tru1I | TTAA | 2 cut(s) | 276, 540 |
| Tru9I | TTAA | 2 cut(s) | 276, 540 |
| TseFI | GTSAC | 1 cut(s) | 67 |
| Tsp45I | GTSAC | 1 cut(s) | 67 |
| TspDTI | ATGAA | 3 cut(s) | 600, 612, 785 |
| TspGWI | ACGGA | 1 cut(s) | 769 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 656 |
| VpaK11BI | GGWCC | 1 cut(s) | 777 |
| XapI | RAATTY | 5 cut(s) | 21, 437, 573, 679, 690 |
| XbaI | TCTAGA | 2 cut(s) | 722, 751 |
| XmnI | GAANNNNTTC | 3 cut(s) | 718, 797, 864 |
| XspI | CTAG | 4 cut(s) | 636, 687, 723, 752 |
| Zsp2I | ATGCAT | 1 cut(s) | 46 |