Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0012872

Physical Location & Seq

Genomic Coordinates Reverse (-)

4282636 .. 4283787

Gene Structure 1152 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1053600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1152 bp

ATGGGGAACTACAAGTTCAGATTTTCAGACATGATCCCAAATGCCTGGTTTTACAAACTCAAAGACATGAGAAGTAGCAGAACCAAAAACCATAACACCTCTCACCACCACCATCACTCCACCAAGCAACAAAAACCAACCTCAAATAAATTTCCACCACCCCAAAAATCCCACATTTCTCAAACAAGAAGATACTCCTACTACTTGTCCACGCAACCCAACAGAGAAAACAGGTATTATAATTCCCCTATCCACCCCAAAGCCTCAGACACACATTTTCCTGAAAACCCCAGAAGACTATCCACCAGAACATCCAAAAGAAAAGCAGTTTACAAGCCTTCTCCTAACAAATCTGTCTCAAAATCCTCATCAAATTGCAACTGTCATGCTGCGGTTAATTCGGTTTGGACTGATGATGAGAGCCAAAGAACTATTCAGTCTCCAGATTACTTTGGCTCTTCTAGTGAGAGTTCTAGTGAGCCTGACTTTCATGAATTCATCCCATCAGAATTTGAATGTGACCCGAAATTTGCTAACATGAAAAATGAAGGCTGTACAAGAAAAATCCATGATCAGAAGCTTGATGGGTTTGATTTTGATATGATCTCAGAGGTAGAGCTTCCTCCAATTTTGACAAAGCCAGTGAAATTTGATGAGGGAGCCAAGCTCAAGAGAAGTTCCTCAAAAGTGAAGGAAATACAAGGACAAAGGTCTCTCACTGTCAAAATTGTCAAGGAGGAAAGCATTAGGACTCAAAAGGGTAACCAAAGGAAGGTTACCCCAAATTCGGTTCGAAAGGCTTCTCTCAGTTCAACAGGCATAAGAATTAGAGGCAACTCTCCAAGACTTCGAAGCAAGAAGAAAACTCAGCCACGTGGTAGAAAGAGTGTGTCATCATCACCATCGTCGTGCTTGAAGTCGAAGAACAGGCTCCTTTCGGAGAGTTTTGCAGTTGTCAAGACCTCAGTTGATCCACAGAGAGACTTCAGGGAGTCAATGATGGAGATGATTGTGGAGAACAACATCAGGGCAGCTAAGGATTTGGAAGACCTGCTTGCTTGCTATCTCTCACTCAACTCAAATGAATATCATGATCTCATTGTCAAGGCCTTTGAGCAAATCTGGTTTGACATGGCTCACATCAAAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006355 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0044087 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:1902679 GO:1903338 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2000652 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DNA_binding_2 Ovate

Protein Analysis

384

Amino Acids

44.15

Weight (kDa)

9.81

Isoelectric Point (pI)

55.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DNA_binding_2	PF13724	1 - 47	2.7e-19	DNA-binding domain
Ovate	PF04844	322 - 378	9e-26	Transcriptional repressor, ovate

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0012872)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06920 AT2G30400
fragaria_vesca	FvH4_3g40310
malus_domestica	MD03G1053600.v1.1 MD11G1055200.v1.1
prunus_persica	Prupe.6G042700_v2.0.a1
pyrus_communis	pycom03g04250 pycom11g04500
rosa_chinensis	RchiOBHm_Chr5g0072651
rosa_laevigata	RLG00000036321
rosa_multiflora	Rmu_co8479013.1_g000001
rosa_roxburghii	Rroxscaffold_1G00008500
rosa_rugosa	Rorug05G0419000
rosa_samantha	Rh5AG476000 Rh5BG496100 Rh5CG519900 Rh5DG508600
rosa_wichuraiana	Rw5G044200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	240
Acc36I	ACCTGC	1 cut(s)	1059
AciI	CCGC	1 cut(s)	392
AclWI	GGATC	2 cut(s)	28, 965
AcsI	RAATTY	6 cut(s)	149, 494, 509, 527, 647, 784
AcuI	CTGAAG	1 cut(s)	970
AcvI	CACGTG	1 cut(s)	875
AfaI	GTAC	1 cut(s)	556
AfiI	CCNNNNNNNGG	2 cut(s)	772, 787
AgsI	TTSAA	3 cut(s)	515, 813, 916
AjnI	CCWGG	1 cut(s)	44
AjuI	GAANNNNNNNTTGG	2 cut(s)	417, 449
AluBI	AGCT	4 cut(s)	580, 619, 667, 1034
AluI	AGCT	4 cut(s)	580, 619, 667, 1034
Alw26I	GTCTC	4 cut(s)	361, 444, 717, 975
AlwI	GGATC	2 cut(s)	28, 965
AoxI	GGCC	1 cut(s)	1107
ApeKI	GCWGC	2 cut(s)	389, 1031
ApoI	RAATTY	6 cut(s)	149, 494, 509, 527, 647, 784
ArsI	GACNNNNNNTTYG	2 cut(s)	512, 544
Asp700I	GAANNNNTTC	1 cut(s)	799
AsuHPI	GGTGA	2 cut(s)	95, 891
AsuII	TTCGAA	2 cut(s)	793, 850
BbrPI	CACGTG	1 cut(s)	875
BbsI	GAAGAC	2 cut(s)	301, 1053
BbvI	GCAGC	2 cut(s)	376, 1043
BccI	CCATC	5 cut(s)	120, 511, 578, 910, 994
BciT130I	CCWGG	1 cut(s)	46
BclI	TGATCA	1 cut(s)	571
BcoDI	GTCTC	4 cut(s)	361, 444, 717, 975
BfaI	CTAG	2 cut(s)	462, 474
BfuAI	ACCTGC	1 cut(s)	1059
BisI	GCNGC	2 cut(s)	390, 1032
BlsI	GCNGC	2 cut(s)	391, 1033
Bme1390I	CCNGG	1 cut(s)	46
BmiI	GGNNCC	2 cut(s)	661, 932
BmrFI	CCNGG	1 cut(s)	46
BoxI	GACNNNNGTC	1 cut(s)	709
BpiI	GAAGAC	2 cut(s)	301, 1053
BplI	GAGNNNNNCTC	2 cut(s)	651, 683
BpmI	CTGGAG	1 cut(s)	426
Bpu10I	CCTNAGC	1 cut(s)	1035
Bpu14I	TTCGAA	2 cut(s)	793, 850
BpuEI	CTTGAG	1 cut(s)	653
BsaAI	YACGTR	1 cut(s)	875
BsaI	GGTCTC	1 cut(s)	717
BsaXI	ACNNNNNCTCC	2 cut(s)	101, 131
Bsc4I	CCNNNNNNNGG	2 cut(s)	772, 787
Bse1I	ACTGG	1 cut(s)	641
BseBI	CCWGG	1 cut(s)	46
BseGI	GGATG	2 cut(s)	311, 498
BseLI	CCNNNNNNNGG	2 cut(s)	772, 787
BseMII	CTCAG	5 cut(s)	279, 621, 820, 881, 978
BseNI	ACTGG	1 cut(s)	641
BseXI	GCAGC	2 cut(s)	376, 1043
BshFI	GGCC	1 cut(s)	1109
BslI	CCNNNNNNNGG	2 cut(s)	772, 787
BsmAI	GTCTC	4 cut(s)	361, 444, 717, 975
BsnI	GGCC	1 cut(s)	1109
Bso31I	GGTCTC	1 cut(s)	717
Bsp119I	TTCGAA	2 cut(s)	793, 850
Bsp1407I	TGTACA	1 cut(s)	554
Bsp143I	GATC	5 cut(s)	33, 571, 603, 970, 1093
BspACI	CCGC	1 cut(s)	392
BspANI	GGCC	1 cut(s)	1109
BspCNI	CTCAG	5 cut(s)	278, 620, 819, 880, 977
BspHI	TCATGA	2 cut(s)	490, 1090
BspLI	GGNNCC	2 cut(s)	661, 932
BspMI	ACCTGC	1 cut(s)	1059
BspPI	GGATC	2 cut(s)	28, 965
BspQI	GCTCTTC	1 cut(s)	463
BspT104I	TTCGAA	2 cut(s)	793, 850
BspTNI	GGTCTC	1 cut(s)	717
BsrGI	TGTACA	1 cut(s)	554
BsrI	ACTGG	1 cut(s)	641
BssMI	GATC	5 cut(s)	33, 571, 603, 970, 1093
Bst2UI	CCWGG	1 cut(s)	46
Bst4CI	ACNGT	2 cut(s)	383, 721
Bst6I	CTCTTC	1 cut(s)	463
BstAUI	TGTACA	1 cut(s)	554
BstBAI	YACGTR	1 cut(s)	875
BstBI	TTCGAA	2 cut(s)	793, 850
BstC8I	GCNNGC	2 cut(s)	1056, 1060
BstDEI	CTNAG	6 cut(s)	265, 607, 806, 867, 964, 1035
BstEII	GGTNACC	2 cut(s)	761, 775
BstF5I	GGATG	2 cut(s)	311, 498
BstKTI	GATC	5 cut(s)	36, 574, 606, 973, 1096
BstMAI	GTCTC	4 cut(s)	361, 444, 717, 975
BstMBI	GATC	5 cut(s)	33, 571, 603, 970, 1093
BstNI	CCWGG	1 cut(s)	46
BstPAI	GACNNNNGTC	1 cut(s)	709
BstPI	GGTNACC	2 cut(s)	761, 775
BstSCI	CCNGG	1 cut(s)	44
BstV1I	GCAGC	2 cut(s)	376, 1043
BstV2I	GAAGAC	2 cut(s)	301, 1053
BstXI	CCANNNNNNTGG	1 cut(s)	45
BsuRI	GGCC	1 cut(s)	1109
BtsCI	GGATG	2 cut(s)	311, 498
BtsIMutI	CAGTG	2 cut(s)	648, 717
BveI	ACCTGC	1 cut(s)	1059
Cac8I	GCNNGC	2 cut(s)	1056, 1060
CciI	TCATGA	2 cut(s)	490, 1090
Csp6I	GTAC	1 cut(s)	555
CviAII	CATG	8 cut(s)	31, 67, 386, 491, 538, 569, 1091, 1132
CviQI	GTAC	1 cut(s)	555
DdeI	CTNAG	6 cut(s)	265, 607, 806, 867, 964, 1035
DpnI	GATC	5 cut(s)	35, 573, 605, 972, 1095
DpnII	GATC	5 cut(s)	33, 571, 603, 970, 1093
Eam1104I	CTCTTC	1 cut(s)	463
EarI	CTCTTC	1 cut(s)	463
Eco147I	AGGCCT	1 cut(s)	1109
Eco31I	GGTCTC	1 cut(s)	717
Eco57I	CTGAAG	1 cut(s)	970
Eco72I	CACGTG	1 cut(s)	875
Eco91I	GGTNACC	2 cut(s)	761, 775
EcoO65I	GGTNACC	2 cut(s)	761, 775
EcoRI	GAATTC	1 cut(s)	494
EcoRII	CCWGG	1 cut(s)	44
FaeI	CATG	8 cut(s)	34, 70, 389, 494, 541, 572, 1094, 1135
FalI	AAGNNNNNCTT	2 cut(s)	1038, 1070
FatI	CATG	8 cut(s)	30, 66, 385, 490, 537, 568, 1090, 1131
FbaI	TGATCA	1 cut(s)	571
Fnu4HI	GCNGC	2 cut(s)	390, 1032
FokI	GGATG	2 cut(s)	298, 485
Fsp4HI	GCNGC	2 cut(s)	390, 1032
FspBI	CTAG	2 cut(s)	462, 474
GluI	GCNGC	2 cut(s)	390, 1032
GsuI	CTGGAG	1 cut(s)	426
HaeIII	GGCC	1 cut(s)	1109
Hin1II	CATG	8 cut(s)	34, 70, 389, 494, 541, 572, 1094, 1135
HindIII	AAGCTT	1 cut(s)	578
HinfI	GANTC	2 cut(s)	751, 992
HphI	GGTGA	2 cut(s)	95, 891
Hpy166II	GTNNAC	2 cut(s)	210, 331
Hpy188I	TCNGA	7 cut(s)	20, 28, 268, 508, 576, 610, 940
Hpy188III	TCNNGA	6 cut(s)	281, 443, 491, 670, 958, 1091
Hpy8I	GTNNAC	2 cut(s)	210, 331
Hpy99I	CGWCG	1 cut(s)	910
HpyAV	CCTTC	4 cut(s)	348, 542, 685, 766
HpyCH4III	ACNGT	2 cut(s)	383, 721
HpyCH4IV	ACGT	1 cut(s)	874
HpyCH4V	TGCA	2 cut(s)	378, 950
HpyF3I	CTNAG	6 cut(s)	265, 607, 806, 867, 964, 1035
HpySE526I	ACGT	1 cut(s)	874
Hsp92II	CATG	8 cut(s)	34, 70, 389, 494, 541, 572, 1094, 1135
Ksp22I	TGATCA	1 cut(s)	571
Kzo9I	GATC	5 cut(s)	33, 571, 603, 970, 1093
LguI	GCTCTTC	1 cut(s)	463
LmnI	GCTCC	2 cut(s)	659, 936
Lsp1109I	GCAGC	2 cut(s)	376, 1043
MaeI	CTAG	2 cut(s)	462, 474
MaeII	ACGT	1 cut(s)	874
MaeIII	GTNAC	3 cut(s)	518, 761, 775
MalI	GATC	5 cut(s)	35, 573, 605, 972, 1095
MboI	GATC	5 cut(s)	33, 571, 603, 970, 1093
MboII	GAAGA	6 cut(s)	201, 306, 450, 871, 934, 1058
MlyI	GAGTC	2 cut(s)	745, 1001
MroXI	GAANNNNTTC	1 cut(s)	799
MseI	TTAA	1 cut(s)	396
MslI	CAYNNNNRTG	2 cut(s)	907, 1145
MspR9I	CCNGG	1 cut(s)	46
MvaI	CCWGG	1 cut(s)	46
NdeII	GATC	5 cut(s)	33, 571, 603, 970, 1093
NlaIII	CATG	8 cut(s)	34, 70, 389, 494, 541, 572, 1094, 1135
NlaIV	GGNNCC	2 cut(s)	661, 932
NmuCI	GTSAC	1 cut(s)	518
NspV	TTCGAA	2 cut(s)	793, 850
PagI	TCATGA	2 cut(s)	490, 1090
PceI	AGGCCT	1 cut(s)	1109
PciSI	GCTCTTC	1 cut(s)	463
PdmI	GAANNNNTTC	1 cut(s)	799
PkrI	GCNGC	2 cut(s)	391, 1033
PleI	GAGTC	2 cut(s)	745, 1000
PmaCI	CACGTG	1 cut(s)	875
PmlI	CACGTG	1 cut(s)	875
PpsI	GAGTC	2 cut(s)	745, 1000
Ppu21I	YACGTR	1 cut(s)	875
PshAI	GACNNNNGTC	1 cut(s)	709
PsiI	TTATAA	1 cut(s)	240
Psp6I	CCWGG	1 cut(s)	44
PspCI	CACGTG	1 cut(s)	875
PspEI	GGTNACC	2 cut(s)	761, 775
PspGI	CCWGG	1 cut(s)	44
PspN4I	GGNNCC	2 cut(s)	661, 932
RsaI	GTAC	1 cut(s)	556
RsaNI	GTAC	1 cut(s)	555
RseI	CAYNNNNRTG	2 cut(s)	907, 1145
SapI	GCTCTTC	1 cut(s)	463
SaqAI	TTAA	1 cut(s)	396
SatI	GCNGC	2 cut(s)	390, 1032
Sau3AI	GATC	5 cut(s)	33, 571, 603, 970, 1093
SchI	GAGTC	2 cut(s)	745, 1001
ScrFI	CCNGG	1 cut(s)	46
SfuI	TTCGAA	2 cut(s)	793, 850
SmiMI	CAYNNNNRTG	2 cut(s)	907, 1145
SmlI	CTYRAG	1 cut(s)	668
SmoI	CTYRAG	1 cut(s)	668
SseBI	AGGCCT	1 cut(s)	1109
SsiI	CCGC	1 cut(s)	392
SspMI	CTAG	2 cut(s)	462, 474
StuI	AGGCCT	1 cut(s)	1109
StyD4I	CCNGG	1 cut(s)	44
TaaI	ACNGT	2 cut(s)	383, 721
TaiI	ACGT	1 cut(s)	877
TaqI	TCGA	3 cut(s)	793, 850, 920
TatI	WGTACW	1 cut(s)	554
Tru1I	TTAA	1 cut(s)	396
Tru9I	TTAA	1 cut(s)	396
TscAI	CASTG	2 cut(s)	648, 724
TseFI	GTSAC	1 cut(s)	518
TseI	GCWGC	2 cut(s)	389, 1031
Tsp45I	GTSAC	1 cut(s)	518
TspDTI	ATGAA	6 cut(s)	479, 487, 507, 554, 561, 1098
TspRI	CASTG	2 cut(s)	648, 724
XapI	RAATTY	6 cut(s)	149, 494, 509, 527, 647, 784
XmnI	GAANNNNTTC	1 cut(s)	799
XspI	CTAG	2 cut(s)	462, 474

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.