Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0012872

Physical Location & Seq

Genomic Coordinates Forward (+)

34040777 .. 34042472

Gene Structure 1696 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g40310.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

ATGGGTAACTACAGGTTCAGATTGGCAGATATGATACCAAATGCCTGGTTTTACAAGCTTACAGATATGAGCAAAACCAGAAAACACAACACTACTTCTCCCAAGAAAAAACCACCAACCTCTTCATTCCCACCACAAAGAACCACCCATCTTTCACAAACCAGATACTCCTACTACATCACAACAGACCAACAACCCAACAGAGATGAAAGGTTCTTCTACAATTCACCTACATGCCCCAAAGGCTCAGATACAAATTTTCCAGAACAACCAAGAAGGTCATCCACTAAAAGAAGCAGAAGGAAAGCTGTTTACAGGCCTTCTCCTAAGAAACATGTCATTTCTTCCTCTGTTTCATCAGGCCATTGTAGCTGTCAATGTCATGCCTCAACTCCTGAGTCTCTTGACTACTTTGGCTCATCTTCAAGTGAGAGAAATTCCACTGAAACTCATGACTTTCATGAATTGATTCCATCCGAGTTCGAAAGCGACCAGTTGGGTGCTAGTGAGTTTGGCTCTTATAGCTGCAGAGTAAGTTCTTCAACTTCTGATACTATCATTGACAAGAAAAAAGAAGGCTCAACCAACAAAGTCCATGATCGGTTTGACATGATCTCGGAGTTAGAGCTTCCTCCAATCTTGACAAAGCCAACGAAGCTTGATGATCGTAGTAAGGCCATTGAGTCCACCAAGTTCAGGAAGAGTACGTCATCCAAATTGAAGGAAACAAAAGGGCACCAGTCTCTTTCTGTGAAGATTGTCAAGGAAGAAAGAAGCAGTAGTAGGATACAGAAGGACCAAAAGACAGCAGCTCCTTACGTTCGGAACTCGTCTGCTTCTCCAACCGGCATAAGGCTTCGAGGCAACTCTCCGAGACTAGCAAGCAAGAAACTTCAGCAGCCCTTTGGTAGTAAAAAGAGTGTGTCAAAGAATAGAGGAGGCATTTCGGACAGCTTTGCAGTTGTGAAGTCCTCACTTGACCCTCAGAGGGACTTCAAGGACTCAATGAGGGAGATGATCATGGAGAATAACATCAAGGAATCTAAGGATTTGGAAGACCTCCTTGCTTGTTATCTTTCACTCAACTCAAGGGAATACCATGATCTCATTGTCAAGGCTTTCGAGCAAATCTGGTTCGATATGGCTCGCATTAAAATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006355 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0044087 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:1902679 GO:1903338 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2000652 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DNA_binding_2 Ovate

Protein Analysis

387

Amino Acids

44.0

Weight (kDa)

9.67

Isoelectric Point (pI)

55.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DNA_binding_2	PF13724	1 - 37	1.4e-18	DNA-binding domain
Ovate	PF04844	325 - 381	3.1e-25	Transcriptional repressor, ovate

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012872)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06920 AT2G30400
fragaria_vesca	FvH4_3g40310
malus_domestica	MD03G1053600.v1.1 MD11G1055200.v1.1
prunus_persica	Prupe.6G042700_v2.0.a1
pyrus_communis	pycom03g04250 pycom11g04500
rosa_chinensis	RchiOBHm_Chr5g0072651
rosa_laevigata	RLG00000036321
rosa_multiflora	Rmu_co8479013.1_g000001
rosa_roxburghii	Rroxscaffold_1G00008500
rosa_rugosa	Rorug05G0419000
rosa_samantha	Rh5AG476000 Rh5BG496100 Rh5CG519900 Rh5DG508600
rosa_wichuraiana	Rw5G044200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	735
AcsI	RAATTY	2 cut(s)	256, 436
AcuI	CTGAAG	1 cut(s)	878
AfaI	GTAC	1 cut(s)	706
AfiI	CCNNNNNNNGG	3 cut(s)	696, 852, 988
AflIII	ACRYGT	1 cut(s)	334
AgsI	TTSAA	4 cut(s)	426, 543, 721, 997
AjnI	CCWGG	1 cut(s)	44
AluBI	AGCT	8 cut(s)	58, 308, 372, 525, 628, 658, 812, 954
AluI	AGCT	8 cut(s)	58, 308, 372, 525, 628, 658, 812, 954
Alw26I	GTCTC	3 cut(s)	405, 747, 868
AoxI	GGCC	3 cut(s)	317, 361, 675
ApeKI	GCWGC	3 cut(s)	525, 809, 898
ApoI	RAATTY	2 cut(s)	256, 436
Asp700I	GAANNNNTTC	1 cut(s)	468
AspS9I	GGNCC	1 cut(s)	796
AsuHPI	GGTGA	1 cut(s)	219
AsuII	TTCGAA	1 cut(s)	483
AvaII	GGWCC	1 cut(s)	796
BaeGI	GKGCMC	1 cut(s)	738
BanI	GGYRCC	1 cut(s)	735
BbsI	GAAGAC	1 cut(s)	1062
BbvI	GCAGC	3 cut(s)	512, 821, 910
BccI	CCATC	2 cut(s)	156, 481
BciT130I	CCWGG	1 cut(s)	46
BciVI	GTATCC	1 cut(s)	780
BclI	TGATCA	1 cut(s)	1017
BcoDI	GTCTC	3 cut(s)	405, 747, 868
BfaI	CTAG	2 cut(s)	504, 878
BfmI	CTRYAG	2 cut(s)	10, 526
BfuI	GTATCC	1 cut(s)	780
BglI	GCCNNNNNGGC	1 cut(s)	243
BisI	GCNGC	3 cut(s)	526, 810, 899
BlsI	GCNGC	3 cut(s)	527, 811, 900
Bme1390I	CCNGG	1 cut(s)	46
Bme18I	GGWCC	1 cut(s)	796
BmgT120I	GGNCC	1 cut(s)	796
BmiI	GGNNCC	1 cut(s)	737
BmrFI	CCNGG	1 cut(s)	46
BpiI	GAAGAC	1 cut(s)	1062
BplI	GAGNNNNNCTC	2 cut(s)	500, 532
Bpu14I	TTCGAA	1 cut(s)	483
BpuEI	CTTGAG	1 cut(s)	1072
BsaXI	ACNNNNNCTCC	4 cut(s)	82, 112, 796, 826
Bsc4I	CCNNNNNNNGG	3 cut(s)	696, 852, 988
Bse118I	RCCGGY	1 cut(s)	845
Bse1I	ACTGG	2 cut(s)	493, 739
BseBI	CCWGG	1 cut(s)	46
BseGI	GGATG	3 cut(s)	281, 473, 710
BseLI	CCNNNNNNNGG	3 cut(s)	696, 852, 988
BseMII	CTCAG	3 cut(s)	261, 387, 998
BseNI	ACTGG	2 cut(s)	493, 739
BseRI	GAGGAG	1 cut(s)	951
BseSI	GKGCMC	1 cut(s)	738
BseXI	GCAGC	3 cut(s)	512, 821, 910
BshFI	GGCC	3 cut(s)	319, 363, 677
BshNI	GGYRCC	1 cut(s)	735
BsiSI	CCGG	1 cut(s)	846
BslFI	GGGAC	1 cut(s)	1004
BslI	CCNNNNNNNGG	3 cut(s)	696, 852, 988
BsmAI	GTCTC	3 cut(s)	405, 747, 868
BsmFI	GGGAC	1 cut(s)	1004
BsnI	GGCC	3 cut(s)	319, 363, 677
Bsp119I	TTCGAA	1 cut(s)	483
Bsp1286I	GDGCHC	1 cut(s)	738
Bsp143I	GATC	5 cut(s)	598, 612, 664, 1017, 1102
BspANI	GGCC	3 cut(s)	319, 363, 677
BspCNI	CTCAG	3 cut(s)	260, 388, 997
BspHI	TCATGA	2 cut(s)	451, 460
BspLI	GGNNCC	1 cut(s)	737
BspMAI	CTGCAG	1 cut(s)	530
BspT104I	TTCGAA	1 cut(s)	483
BspT107I	GGYRCC	1 cut(s)	735
BsrFI	RCCGGY	1 cut(s)	845
BsrI	ACTGG	2 cut(s)	493, 739
BssAI	RCCGGY	1 cut(s)	845
BssMI	GATC	5 cut(s)	598, 612, 664, 1017, 1102
Bst2UI	CCWGG	1 cut(s)	46
Bst6I	CTCTTC	2 cut(s)	127, 695
BstBI	TTCGAA	1 cut(s)	483
BstC8I	GCNNGC	2 cut(s)	883, 1147
BstDEI	CTNAG	5 cut(s)	247, 327, 396, 984, 1044
BstF5I	GGATG	3 cut(s)	281, 473, 710
BstKTI	GATC	5 cut(s)	601, 615, 667, 1020, 1105
BstMAI	GTCTC	3 cut(s)	405, 747, 868
BstMBI	GATC	5 cut(s)	598, 612, 664, 1017, 1102
BstMWI	GCNNNNNNNGC	4 cut(s)	243, 369, 522, 655
BstNI	CCWGG	1 cut(s)	46
BstNSI	RCATGY	2 cut(s)	237, 338
BstSCI	CCNGG	1 cut(s)	44
BstSFI	CTRYAG	2 cut(s)	10, 526
BstSLI	GKGCMC	1 cut(s)	738
BstV1I	GCAGC	3 cut(s)	512, 821, 910
BstV2I	GAAGAC	1 cut(s)	1062
BstXI	CCANNNNNNTGG	1 cut(s)	45
BsuI	GTATCC	1 cut(s)	780
BsuRI	GGCC	3 cut(s)	319, 363, 677
BtsCI	GGATG	3 cut(s)	281, 473, 710
BtsIMutI	CAGTG	1 cut(s)	441
Cac8I	GCNNGC	2 cut(s)	883, 1147
CciI	TCATGA	2 cut(s)	451, 460
Cfr10I	RCCGGY	1 cut(s)	845
Cfr13I	GGNCC	1 cut(s)	796
Csp6I	GTAC	1 cut(s)	705
CviAII	CATG	9 cut(s)	234, 335, 383, 452, 461, 596, 610, 1021, 1100
CviQI	GTAC	1 cut(s)	705
DdeI	CTNAG	5 cut(s)	247, 327, 396, 984, 1044
DpnI	GATC	5 cut(s)	600, 614, 666, 1019, 1104
DpnII	GATC	5 cut(s)	598, 612, 664, 1017, 1102
Eam1104I	CTCTTC	2 cut(s)	127, 695
EarI	CTCTTC	2 cut(s)	127, 695
Eco147I	AGGCCT	1 cut(s)	319
Eco47I	GGWCC	1 cut(s)	796
Eco57I	CTGAAG	1 cut(s)	878
EcoRII	CCWGG	1 cut(s)	44
FaeI	CATG	9 cut(s)	237, 338, 386, 455, 464, 599, 613, 1024, 1103
FalI	AAGNNNNNCTT	2 cut(s)	1047, 1079
FaqI	GGGAC	1 cut(s)	1004
FatI	CATG	9 cut(s)	233, 334, 382, 451, 460, 595, 609, 1020, 1099
FbaI	TGATCA	1 cut(s)	1017
Fnu4HI	GCNGC	3 cut(s)	526, 810, 899
FokI	GGATG	3 cut(s)	268, 460, 697
Fsp4HI	GCNGC	3 cut(s)	526, 810, 899
FspBI	CTAG	2 cut(s)	504, 878
GluI	GCNGC	3 cut(s)	526, 810, 899
HaeIII	GGCC	3 cut(s)	319, 363, 677
HapII	CCGG	1 cut(s)	846
Hin1II	CATG	9 cut(s)	237, 338, 386, 455, 464, 599, 613, 1024, 1103
HindIII	AAGCTT	2 cut(s)	56, 656
HinfI	GANTC	5 cut(s)	398, 469, 683, 1001, 1040
HpaII	CCGG	1 cut(s)	846
HphI	GGTGA	1 cut(s)	219
Hpy166II	GTNNAC	2 cut(s)	313, 687
Hpy188III	TCNNGA	7 cut(s)	263, 395, 404, 452, 461, 640, 697
Hpy8I	GTNNAC	2 cut(s)	313, 687
HpyAV	CCTTC	6 cut(s)	270, 294, 330, 569, 715, 787
HpyCH4IV	ACGT	2 cut(s)	707, 819
HpyCH4V	TGCA	2 cut(s)	528, 959
HpyF10VI	GCNNNNNNNGC	4 cut(s)	243, 369, 522, 655
HpyF3I	CTNAG	5 cut(s)	247, 327, 396, 984, 1044
HpySE526I	ACGT	2 cut(s)	707, 819
Hsp92II	CATG	9 cut(s)	237, 338, 386, 455, 464, 599, 613, 1024, 1103
Ksp22I	TGATCA	1 cut(s)	1017
Kzo9I	GATC	5 cut(s)	598, 612, 664, 1017, 1102
LmnI	GCTCC	1 cut(s)	817
Lsp1109I	GCAGC	3 cut(s)	512, 821, 910
MaeI	CTAG	2 cut(s)	504, 878
MaeII	ACGT	2 cut(s)	707, 819
MaeIII	GTNAC	1 cut(s)	5
MalI	GATC	5 cut(s)	600, 614, 666, 1019, 1104
MboI	GATC	5 cut(s)	598, 612, 664, 1017, 1102
MboII	GAAGA	9 cut(s)	114, 208, 336, 414, 531, 712, 766, 779, 1067
MhlI	GDGCHC	1 cut(s)	738
MluCI	AATT	5 cut(s)	223, 256, 436, 464, 716
MlyI	GAGTC	3 cut(s)	407, 692, 995
MmeI	TCCRAC	1 cut(s)	866
MroXI	GAANNNNTTC	1 cut(s)	468
MseI	TTAA	1 cut(s)	1152
MslI	CAYNNNNRTG	1 cut(s)	232
MspI	CCGG	1 cut(s)	846
MspR9I	CCNGG	1 cut(s)	46
MvaI	CCWGG	1 cut(s)	46
MwoI	GCNNNNNNNGC	4 cut(s)	243, 369, 522, 655
NdeII	GATC	5 cut(s)	598, 612, 664, 1017, 1102
NlaIII	CATG	9 cut(s)	237, 338, 386, 455, 464, 599, 613, 1024, 1103
NlaIV	GGNNCC	1 cut(s)	737
NspI	RCATGY	2 cut(s)	237, 338
NspV	TTCGAA	1 cut(s)	483
PagI	TCATGA	2 cut(s)	451, 460
PceI	AGGCCT	1 cut(s)	319
PciI	ACATGT	1 cut(s)	334
PdmI	GAANNNNTTC	1 cut(s)	468
PfeI	GAWTC	2 cut(s)	469, 1040
PkrI	GCNGC	3 cut(s)	527, 811, 900
PleI	GAGTC	3 cut(s)	406, 691, 995
PpsI	GAGTC	3 cut(s)	406, 691, 995
PscI	ACATGT	1 cut(s)	334
Psp6I	CCWGG	1 cut(s)	44
PspGI	CCWGG	1 cut(s)	44
PspN4I	GGNNCC	1 cut(s)	737
PspPI	GGNCC	1 cut(s)	796
PstI	CTGCAG	1 cut(s)	530
RsaI	GTAC	1 cut(s)	706
RsaNI	GTAC	1 cut(s)	705
RseI	CAYNNNNRTG	1 cut(s)	232
SaqAI	TTAA	1 cut(s)	1152
SatI	GCNGC	3 cut(s)	526, 810, 899
Sau3AI	GATC	5 cut(s)	598, 612, 664, 1017, 1102
Sau96I	GGNCC	1 cut(s)	796
SchI	GAGTC	3 cut(s)	407, 692, 995
ScrFI	CCNGG	1 cut(s)	46
SduI	GDGCHC	1 cut(s)	738
SfcI	CTRYAG	2 cut(s)	10, 526
SfuI	TTCGAA	1 cut(s)	483
SinI	GGWCC	1 cut(s)	796
SmiMI	CAYNNNNRTG	1 cut(s)	232
SmlI	CTYRAG	1 cut(s)	1087
SmoI	CTYRAG	1 cut(s)	1087
Sse9I	AATT	5 cut(s)	223, 256, 436, 464, 716
SseBI	AGGCCT	1 cut(s)	319
SspMI	CTAG	2 cut(s)	504, 878
StuI	AGGCCT	1 cut(s)	319
StyD4I	CCNGG	1 cut(s)	44
TaiI	ACGT	2 cut(s)	710, 822
TaqI	TCGA	4 cut(s)	483, 859, 1122, 1137
TasI	AATT	5 cut(s)	223, 256, 436, 464, 716
TfiI	GAWTC	2 cut(s)	469, 1040
Tru1I	TTAA	1 cut(s)	1152
Tru9I	TTAA	1 cut(s)	1152
TscAI	CASTG	1 cut(s)	448
TseI	GCWGC	3 cut(s)	525, 809, 898
TspDTI	ATGAA	5 cut(s)	114, 222, 345, 449, 477
TspRI	CASTG	1 cut(s)	448
VpaK11BI	GGWCC	1 cut(s)	796
XapI	RAATTY	2 cut(s)	256, 436
XceI	RCATGY	2 cut(s)	237, 338
XmnI	GAANNNNTTC	1 cut(s)	468
XspI	CTAG	2 cut(s)	504, 878

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.