Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0012872

Physical Location & Seq

Genomic Coordinates Reverse (-)

3132813 .. 3134253

Gene Structure 1441 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G042700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1251 bp

ATGGGTAATTACAGGTTCAGATTGTCAGATATGATACCAAATGCCTGGTTTTACAAGCTCAAAGACATGAGCAAAACCAAAAACCACAACCAAACCTCTCATCATCATCACTCTACCAAGAAAAAACCACCCTCAACTTCTACACCACCCCAACAAAAACCCCACCTTTCTCAAACCAGAAGATACTCCTACTACTTCACAACAGAACCCAACAGAGCTGATAAGTTCTATAATTCACCTGTGAACCCCAAAGCCTCAGACACACATTTTCCTGAACACCCCAGAAGATTATCAACCAGAAGAGCCAAAAGAAAAGCTGTTTACAAGCCTTCTCCTAACAAGCATGTCTCAACAACATCCTCTGTCTCATCACCAGCCTATTGTAATTGTCATGCCACAATTGATTCAGTTTGGACTGATCTTGAGACCAACACAATTCAATCCCCAGATTACTTTGGCTCTTCTAGTCAAAGTTCCAGTGAGCCTGAATTTCATGAATTGATCCCATCTGAATATGAATGTCACCAATTTGGTGGTCCTGACCCATTGGATGGGCTAGCCCCATGGTCCAGCTCTTATAATTGCCGAGTTAGTTCTTCAACTTCTGATACCATCATTGACATGAAAGATGGAGCCTCTACAAAGAAAATTCATGATGAGAAGCTTGATGGCTTTGACATGATCTCAGAGCTAGAGCTTCCTCCAATTTTGACAAAGCCAATGAAATTTGATGATCATCATAAGTCCACTGAGGCAACCAAGTTCAAAAGAAGTTCATCTAAATTGAAGGAGATAAAAGGGCAGAGGTCTCTCACTGTCAAGATTGTCAAGGAGGAAAGCATAAGAACACAAAAGGGTAGCCAAAGAAAAGCCAACCGGAATTCAGTTCGAAAGTCCTCTGCCAACTCAACAACAGGTATAAGACTTAGAGGCAATTCTCCAAGACTTAAAAGTAAGAAAAATCAGCCATATGCTAGAAAGAGTGTGTCATCACCATCACCATCCTCATGCTTGAAGTCGAAGAATAGACGCCTTTCGGAGAGCTTTGCAGTTGTTAAGTCCTCAGTTGATCCGCAGAAAGACTTCAGAGACTCAATGGTGGAGATGATTGTGGAGAACAACATCAGGGAATCTAAGGATTTGGAAGACCTTCTTGCTTGTTATCTCTCACTCAACTCAAACGAATATCATGATCTCATTGTCAAGGCCTTTGAGCAAATCTGGTTTGATATGGCTGACATCAAAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006355 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0044087 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:1902679 GO:1903338 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2000652 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DNA_binding_2 Ovate

Protein Analysis

417

Amino Acids

47.46

Weight (kDa)

9.53

Isoelectric Point (pI)

57.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012872)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06920 AT2G30400
fragaria_vesca	FvH4_3g40310
malus_domestica	MD03G1053600.v1.1 MD11G1055200.v1.1
prunus_persica	Prupe.6G042700_v2.0.a1
pyrus_communis	pycom03g04250 pycom11g04500
rosa_chinensis	RchiOBHm_Chr5g0072651
rosa_laevigata	RLG00000036321
rosa_multiflora	Rmu_co8479013.1_g000001
rosa_roxburghii	Rroxscaffold_1G00008500
rosa_rugosa	Rorug05G0419000
rosa_samantha	Rh5AG476000 Rh5BG496100 Rh5CG519900 Rh5DG508600
rosa_wichuraiana	Rw5G044200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	579
AccB7I	CCANNNNNTGG	1 cut(s)	551
AciI	CCGC	1 cut(s)	1073
AclWI	GGATC	2 cut(s)	496, 1064
AcsI	RAATTY	4 cut(s)	488, 648, 725, 880
AcuI	CTGAAG	1 cut(s)	1069
AcyI	GRCGYC	1 cut(s)	1030
AfiI	CCNNNNNNNGG	1 cut(s)	551
AgsI	TTSAA	5 cut(s)	440, 600, 766, 787, 1015
AjnI	CCWGG	1 cut(s)	44
AluBI	AGCT	8 cut(s)	58, 218, 317, 573, 664, 691, 697, 1044
AluI	AGCT	8 cut(s)	58, 218, 317, 573, 664, 691, 697, 1044
Alw26I	GTCTC	5 cut(s)	352, 370, 419, 813, 1083
AlwI	GGATC	2 cut(s)	496, 1064
AoxI	GGCC	1 cut(s)	1206
ApoI	RAATTY	4 cut(s)	488, 648, 725, 880
Asp700I	GAANNNNTTC	2 cut(s)	1082, 1149
AspS9I	GGNCC	2 cut(s)	536, 567
AsuHPI	GGTGA	5 cut(s)	228, 363, 515, 984, 990
AsuII	TTCGAA	1 cut(s)	889
AsuNHI	GCTAGC	1 cut(s)	556
AvaII	GGWCC	2 cut(s)	536, 567
BbsI	GAAGAC	1 cut(s)	1152
BccI	CCATC	7 cut(s)	514, 545, 620, 623, 662, 1003, 1009
BciT130I	CCWGG	1 cut(s)	46
BclI	TGATCA	1 cut(s)	733
BcoDI	GTCTC	5 cut(s)	352, 370, 419, 813, 1083
BfaI	CTAG	4 cut(s)	465, 557, 692, 975
Bme1390I	CCNGG	1 cut(s)	46
Bme18I	GGWCC	2 cut(s)	536, 567
BmgT120I	GGNCC	2 cut(s)	536, 567
BmiI	GGNNCC	1 cut(s)	634
BmrFI	CCNGG	1 cut(s)	46
BmtI	GCTAGC	1 cut(s)	560
BpiI	GAAGAC	1 cut(s)	1152
Bpu14I	TTCGAA	1 cut(s)	889
BpuEI	CTTGAG	1 cut(s)	443
BsaBI	GATNNNNATC	1 cut(s)	735
BsaHI	GRCGYC	1 cut(s)	1030
BsaI	GGTCTC	2 cut(s)	419, 813
BsaJI	CCNNGG	1 cut(s)	563
BsaWI	WCCGGW	1 cut(s)	876
Bsc4I	CCNNNNNNNGG	1 cut(s)	551
Bse1I	ACTGG	1 cut(s)	477
Bse8I	GATNNNNATC	1 cut(s)	735
BseBI	CCWGG	1 cut(s)	46
BseDI	CCNNGG	1 cut(s)	563
BseGI	GGATG	3 cut(s)	356, 556, 1001
BseJI	GATNNNNATC	1 cut(s)	735
BseLI	CCNNNNNNNGG	1 cut(s)	551
BseMII	CTCAG	4 cut(s)	270, 699, 741, 1077
BseNI	ACTGG	1 cut(s)	477
BshFI	GGCC	1 cut(s)	1208
BsiSI	CCGG	1 cut(s)	877
BslI	CCNNNNNNNGG	1 cut(s)	551
BsmAI	GTCTC	5 cut(s)	352, 370, 419, 813, 1083
BsnI	GGCC	1 cut(s)	1208
Bso31I	GGTCTC	2 cut(s)	419, 813
Bsp119I	TTCGAA	1 cut(s)	889
Bsp143I	GATC	6 cut(s)	418, 501, 681, 733, 1069, 1192
Bsp19I	CCATGG	1 cut(s)	563
BspACI	CCGC	1 cut(s)	1073
BspANI	GGCC	1 cut(s)	1208
BspCNI	CTCAG	4 cut(s)	269, 698, 742, 1076
BspHI	TCATGA	3 cut(s)	493, 652, 1189
BspLI	GGNNCC	1 cut(s)	634
BspOI	GCTAGC	1 cut(s)	560
BspPI	GGATC	2 cut(s)	496, 1064
BspQI	GCTCTTC	2 cut(s)	295, 466
BspT104I	TTCGAA	1 cut(s)	889
BspTNI	GGTCTC	2 cut(s)	419, 813
BsrI	ACTGG	1 cut(s)	477
BssECI	CCNNGG	1 cut(s)	563
BssMI	GATC	6 cut(s)	418, 501, 681, 733, 1069, 1192
BssNI	GRCGYC	1 cut(s)	1030
BssT1I	CCWWGG	1 cut(s)	563
Bst2UI	CCWGG	1 cut(s)	46
Bst4CI	ACNGT	1 cut(s)	817
Bst6I	CTCTTC	2 cut(s)	295, 466
BstACI	GRCGYC	1 cut(s)	1030
BstBI	TTCGAA	1 cut(s)	889
BstC8I	GCNNGC	1 cut(s)	558
BstDEI	CTNAG	6 cut(s)	256, 685, 750, 926, 1063, 1134
BstDSI	CCRYGG	1 cut(s)	563
BstF5I	GGATG	3 cut(s)	356, 556, 1001
BstKTI	GATC	6 cut(s)	421, 504, 684, 736, 1072, 1195
BstMAI	GTCTC	5 cut(s)	352, 370, 419, 813, 1083
BstMBI	GATC	6 cut(s)	418, 501, 681, 733, 1069, 1192
BstNI	CCWGG	1 cut(s)	46
BstNSI	RCATGY	1 cut(s)	347
BstSCI	CCNGG	1 cut(s)	44
BstV2I	GAAGAC	1 cut(s)	1152
BstXI	CCANNNNNNTGG	2 cut(s)	45, 533
BsuRI	GGCC	1 cut(s)	1208
BtgI	CCRYGG	1 cut(s)	563
BtsCI	GGATG	3 cut(s)	356, 556, 1001
BtsIMutI	CAGTG	3 cut(s)	484, 747, 813
Cac8I	GCNNGC	1 cut(s)	558
CciI	TCATGA	3 cut(s)	493, 652, 1189
Cfr13I	GGNCC	2 cut(s)	536, 567
CseI	GACGC	1 cut(s)	1038
DdeI	CTNAG	6 cut(s)	256, 685, 750, 926, 1063, 1134
DpnI	GATC	6 cut(s)	420, 503, 683, 735, 1071, 1194
DpnII	GATC	6 cut(s)	418, 501, 681, 733, 1069, 1192
Eam1104I	CTCTTC	2 cut(s)	295, 466
EarI	CTCTTC	2 cut(s)	295, 466
Eco130I	CCWWGG	1 cut(s)	563
Eco147I	AGGCCT	1 cut(s)	1208
Eco31I	GGTCTC	2 cut(s)	419, 813
Eco47I	GGWCC	2 cut(s)	536, 567
Eco57I	CTGAAG	1 cut(s)	1069
EcoRI	GAATTC	1 cut(s)	880
EcoRII	CCWGG	1 cut(s)	44
EcoT14I	CCWWGG	1 cut(s)	563
ErhI	CCWWGG	1 cut(s)	563
FalI	AAGNNNNNCTT	2 cut(s)	1137, 1169
FauNDI	CATATG	1 cut(s)	970
FbaI	TGATCA	1 cut(s)	733
FokI	GGATG	3 cut(s)	343, 563, 988
FspBI	CTAG	4 cut(s)	465, 557, 692, 975
HaeIII	GGCC	1 cut(s)	1208
HapII	CCGG	1 cut(s)	877
HgaI	GACGC	1 cut(s)	1038
Hin1I	GRCGYC	1 cut(s)	1030
HindIII	AAGCTT	1 cut(s)	662
HinfI	GANTC	3 cut(s)	404, 1091, 1130
HpaII	CCGG	1 cut(s)	877
HphI	GGTGA	5 cut(s)	228, 363, 515, 984, 990
Hpy166II	GTNNAC	3 cut(s)	244, 322, 747
Hpy188I	TCNGA	8 cut(s)	20, 28, 259, 511, 607, 688, 1039, 1088
Hpy188III	TCNNGA	7 cut(s)	272, 422, 494, 539, 653, 820, 1190
Hpy8I	GTNNAC	3 cut(s)	244, 322, 747
HpyAV	CCTTC	3 cut(s)	339, 781, 1160
HpyCH4III	ACNGT	1 cut(s)	817
HpyCH4V	TGCA	1 cut(s)	1049
HpyF3I	CTNAG	6 cut(s)	256, 685, 750, 926, 1063, 1134
Hsp92I	GRCGYC	1 cut(s)	1030
Ksp22I	TGATCA	1 cut(s)	733
Kzo9I	GATC	6 cut(s)	418, 501, 681, 733, 1069, 1192
LguI	GCTCTTC	2 cut(s)	295, 466
LmnI	GCTCC	1 cut(s)	632
MaeI	CTAG	4 cut(s)	465, 557, 692, 975
MaeIII	GTNAC	1 cut(s)	521
MalI	GATC	6 cut(s)	420, 503, 683, 735, 1071, 1194
MboI	GATC	6 cut(s)	418, 501, 681, 733, 1069, 1192
MboII	GAAGA	7 cut(s)	192, 297, 312, 453, 588, 1033, 1157
MfeI	CAATTG	1 cut(s)	399
MlyI	GAGTC	1 cut(s)	1085
MroXI	GAANNNNTTC	2 cut(s)	1082, 1149
MseI	TTAA	2 cut(s)	948, 1056
MslI	CAYNNNNRTG	3 cut(s)	620, 1006, 1244
MspI	CCGG	1 cut(s)	877
MspR9I	CCNGG	1 cut(s)	46
MunI	CAATTG	1 cut(s)	399
MvaI	CCWGG	1 cut(s)	46
NcoI	CCATGG	1 cut(s)	563
NdeI	CATATG	1 cut(s)	970
NdeII	GATC	6 cut(s)	418, 501, 681, 733, 1069, 1192
NheI	GCTAGC	1 cut(s)	556
NlaIV	GGNNCC	1 cut(s)	634
NmeAIII	GCCGAG	1 cut(s)	611
NmuCI	GTSAC	1 cut(s)	521
NspI	RCATGY	1 cut(s)	347
NspV	TTCGAA	1 cut(s)	889
PagI	TCATGA	3 cut(s)	493, 652, 1189
PceI	AGGCCT	1 cut(s)	1208
PciSI	GCTCTTC	2 cut(s)	295, 466
PdmI	GAANNNNTTC	2 cut(s)	1082, 1149
PfeI	GAWTC	2 cut(s)	404, 1130
PflMI	CCANNNNNTGG	1 cut(s)	551
PleI	GAGTC	1 cut(s)	1085
PpsI	GAGTC	1 cut(s)	1085
PsiI	TTATAA	1 cut(s)	579
Psp6I	CCWGG	1 cut(s)	44
PspGI	CCWGG	1 cut(s)	44
PspN4I	GGNNCC	1 cut(s)	634
PspPI	GGNCC	2 cut(s)	536, 567
RseI	CAYNNNNRTG	3 cut(s)	620, 1006, 1244
SapI	GCTCTTC	2 cut(s)	295, 466
SaqAI	TTAA	2 cut(s)	948, 1056
Sau3AI	GATC	6 cut(s)	418, 501, 681, 733, 1069, 1192
Sau96I	GGNCC	2 cut(s)	536, 567
SchI	GAGTC	1 cut(s)	1085
ScrFI	CCNGG	1 cut(s)	46
SfuI	TTCGAA	1 cut(s)	889
SinI	GGWCC	2 cut(s)	536, 567
SmiMI	CAYNNNNRTG	3 cut(s)	620, 1006, 1244
SmlI	CTYRAG	1 cut(s)	422
SmoI	CTYRAG	1 cut(s)	422
SseBI	AGGCCT	1 cut(s)	1208
SsiI	CCGC	1 cut(s)	1073
SspMI	CTAG	4 cut(s)	465, 557, 692, 975
StuI	AGGCCT	1 cut(s)	1208
StyD4I	CCNGG	1 cut(s)	44
StyI	CCWWGG	1 cut(s)	563
TaaI	ACNGT	1 cut(s)	817
TaqI	TCGA	2 cut(s)	889, 1019
TfiI	GAWTC	2 cut(s)	404, 1130
Tru1I	TTAA	2 cut(s)	948, 1056
Tru9I	TTAA	2 cut(s)	948, 1056
TscAI	CASTG	3 cut(s)	484, 754, 820
TseFI	GTSAC	1 cut(s)	521
Tsp45I	GTSAC	1 cut(s)	521
TspDTI	ATGAA	7 cut(s)	482, 510, 531, 638, 641, 737, 765
TspRI	CASTG	3 cut(s)	484, 754, 820
Van91I	CCANNNNNTGG	1 cut(s)	551
VpaK11BI	GGWCC	2 cut(s)	536, 567
XapI	RAATTY	4 cut(s)	488, 648, 725, 880
XceI	RCATGY	1 cut(s)	347
XmnI	GAANNNNTTC	2 cut(s)	1082, 1149
XspI	CTAG	4 cut(s)	465, 557, 692, 975

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.