Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0012872

Physical Location & Seq

Genomic Coordinates Reverse (-)

4699962 .. 4701104

Gene Structure 1143 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1055200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

ATGGGGAATTACAAGTTCAGATTTTCAGACATGATCCCAAATGCTTGGTTTTACAAGCTCAAAGACATGAGCAGCACCAGAAACAAAAACCACAACACCTCCCAGCACCATCATCACTCCACCGATCAGAAGAAATCAACCTCAAATAAATTCTCACCACCCCAAAAATCCCACCTATCTCAAACAAGAAGATACTCCTATTACTTCTCTACACAACCCAACATAGAAAACAAGTTCTCCAATTCACCTATCCACCCAAAAGCCTCAGACACACATTTTCCCGAAAACCCCAGAAGAATATCCACCAGAAGATCCGAAAGAAAAGCTGTTTACAAGCCTTCTCCTAACAAATCTGTCTCAAAGTCCTCATCAAATTGCAACTGTCATGCTCAGATTAATTCGGTTTGGACTGATGAGCGCCACAGAAATATTCGGTCTCCCGATTACTTTGGCTCTTCTAGTGAGAGTTCTAGTGAGCCTGACTTTCACGAATTAATCCCATCAGAATTTGAATGTGACCTGAAATTTCCTGACATGAAAAATGAAGGCTCAACAAGAAAAATCCATGATCAGAAGCTTGATGGGTTTGATTCTGATCTGATCTCAGAGGTAGAGCTTCCTCCAATTTTAACAAAGCCACTGAAATTTGATGAGGCCACCAAGTTCAAGAGAAGTTCATCAAAAGTGAAGGAAATACAAGGACAAAGGTCTCTCACTGTCAAAATTGTCAAGGAGGAAAGCATTAGGAAGGGTAACCAAAGGAAAGTTGCCCGGAATTCGGTTCGAAAGTCTTCTGCCAGTTCAACTGGCATAAGACTTAGAGGCAACTCTCCAAGACTTGGAAGCAAGAAGAAAGCTCAGCCATGTGGTAGAAAGAGTGTGCCATCATCACCATCGTCGTGCTTGAAGTCGAAGAACAGGCACCTTTCAGAGAGTTTTGCGGTTGTGAAGTCCTCAGTTGATCCACAGAGGGACTTCAGAGATTCAATGATGGAGATGATTGTGGAGAACAATATCAGGGCAGCTAAGGATTTGGAAGACCTTCTTGCTTGCTATCTCTCACTCAACTCAAAGGAATATCATGAACTCATTGTCAAGGCCTTTGAGCAAATCTGGTTTGACATGGCTCGCATCAAAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006355 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0044087 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:1902679 GO:1903338 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2000652 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DNA_binding_2 Ovate

Protein Analysis

381

Amino Acids

43.72

Weight (kDa)

9.79

Isoelectric Point (pI)

61.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DNA_binding_2	PF13724	1 - 47	1.4e-19	DNA-binding domain
Ovate	PF04844	319 - 375	3e-26	Transcriptional repressor, ovate

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0012872)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06920 AT2G30400
fragaria_vesca	FvH4_3g40310
malus_domestica	MD03G1053600.v1.1 MD11G1055200.v1.1
prunus_persica	Prupe.6G042700_v2.0.a1
pyrus_communis	pycom03g04250 pycom11g04500
rosa_chinensis	RchiOBHm_Chr5g0072651
rosa_laevigata	RLG00000036321
rosa_multiflora	Rmu_co8479013.1_g000001
rosa_roxburghii	Rroxscaffold_1G00008500
rosa_rugosa	Rorug05G0419000
rosa_samantha	Rh5AG476000 Rh5BG496100 Rh5CG519900 Rh5DG508600
rosa_wichuraiana	Rw5G044200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	921
AccB7I	CCANNNNNTGG	1 cut(s)	839
AciI	CCGC	1 cut(s)	941
AclWI	GGATC	3 cut(s)	28, 306, 956
AcsI	RAATTY	5 cut(s)	149, 506, 524, 644, 775
AcuI	CTGAAG	1 cut(s)	961
AfiI	CCNNNNNNNGG	2 cut(s)	778, 839
AgsI	TTSAA	5 cut(s)	512, 667, 804, 907, 987
AluBI	AGCT	6 cut(s)	58, 326, 577, 616, 857, 1025
AluI	AGCT	6 cut(s)	58, 326, 577, 616, 857, 1025
Alw26I	GTCTC	3 cut(s)	361, 441, 714
AlwI	GGATC	3 cut(s)	28, 306, 956
AoxI	GGCC	2 cut(s)	654, 1098
ApeKI	GCWGC	2 cut(s)	72, 1022
ApoI	RAATTY	5 cut(s)	149, 506, 524, 644, 775
AseI	ATTAAT	2 cut(s)	396, 494
Asp700I	GAANNNNTTC	2 cut(s)	790, 1041
AspLEI	GCGC	1 cut(s)	420
AsuC2I	CCSGG	1 cut(s)	772
AsuHPI	GGTGA	3 cut(s)	147, 237, 882
AsuII	TTCGAA	1 cut(s)	784
BanI	GGYRCC	1 cut(s)	921
BbsI	GAAGAC	2 cut(s)	783, 1044
BbvI	GCAGC	2 cut(s)	84, 1034
BccI	CCATC	6 cut(s)	117, 508, 575, 892, 901, 985
BclI	TGATCA	1 cut(s)	568
BcnI	CCSGG	1 cut(s)	772
BcoDI	GTCTC	3 cut(s)	361, 441, 714
BfaI	CTAG	2 cut(s)	459, 471
BfoI	RGCGCY	1 cut(s)	421
BisI	GCNGC	2 cut(s)	73, 1023
BlpI	GCTNAGC	1 cut(s)	858
BlsI	GCNGC	2 cut(s)	74, 1024
Bme1390I	CCNGG	1 cut(s)	772
BmiI	GGNNCC	1 cut(s)	923
BmrFI	CCNGG	1 cut(s)	772
BoxI	GACNNNNGTC	1 cut(s)	706
BpiI	GAAGAC	2 cut(s)	783, 1044
Bpu10I	CCTNAGC	1 cut(s)	1026
Bpu1102I	GCTNAGC	1 cut(s)	858
Bpu14I	TTCGAA	1 cut(s)	784
BpuMI	CCSGG	1 cut(s)	772
BsaBI	GATNNNNATC	1 cut(s)	594
BsaI	GGTCTC	2 cut(s)	441, 714
BsaXI	ACNNNNNCTCC	4 cut(s)	83, 113, 221, 251
Bsc4I	CCNNNNNNNGG	2 cut(s)	778, 839
Bse1I	ACTGG	2 cut(s)	798, 811
Bse8I	GATNNNNATC	1 cut(s)	594
BseJI	GATNNNNATC	1 cut(s)	594
BseLI	CCNNNNNNNGG	2 cut(s)	778, 839
BseMII	CTCAG	5 cut(s)	279, 404, 618, 872, 969
BseNI	ACTGG	2 cut(s)	798, 811
BseXI	GCAGC	2 cut(s)	84, 1034
BseYI	CCCAGC	1 cut(s)	102
BshFI	GGCC	2 cut(s)	656, 1100
BshNI	GGYRCC	1 cut(s)	921
BsiSI	CCGG	1 cut(s)	772
BslFI	GGGAC	1 cut(s)	986
BslI	CCNNNNNNNGG	2 cut(s)	778, 839
BsmAI	GTCTC	3 cut(s)	361, 441, 714
BsmFI	GGGAC	1 cut(s)	986
BsnI	GGCC	2 cut(s)	656, 1100
Bso31I	GGTCTC	2 cut(s)	441, 714
Bsp119I	TTCGAA	1 cut(s)	784
Bsp143I	GATC	7 cut(s)	33, 124, 311, 568, 595, 600, 961
Bsp1720I	GCTNAGC	1 cut(s)	858
BspACI	CCGC	1 cut(s)	941
BspANI	GGCC	2 cut(s)	656, 1100
BspCNI	CTCAG	5 cut(s)	278, 403, 617, 871, 968
BspHI	TCATGA	1 cut(s)	1081
BspLI	GGNNCC	1 cut(s)	923
BspPI	GGATC	3 cut(s)	28, 306, 956
BspQI	GCTCTTC	1 cut(s)	460
BspT104I	TTCGAA	1 cut(s)	784
BspT107I	GGYRCC	1 cut(s)	921
BspTNI	GGTCTC	2 cut(s)	441, 714
BsrI	ACTGG	2 cut(s)	798, 811
BssMI	GATC	7 cut(s)	33, 124, 311, 568, 595, 600, 961
Bst4CI	ACNGT	2 cut(s)	383, 718
Bst6I	CTCTTC	1 cut(s)	460
BstBI	TTCGAA	1 cut(s)	784
BstC8I	GCNNGC	2 cut(s)	1051, 1129
BstDEI	CTNAG	7 cut(s)	265, 390, 604, 818, 858, 955, 1026
BstEII	GGTNACC	1 cut(s)	752
BstH2I	RGCGCY	1 cut(s)	421
BstHHI	GCGC	1 cut(s)	420
BstKTI	GATC	7 cut(s)	36, 127, 314, 571, 598, 603, 964
BstMAI	GTCTC	3 cut(s)	361, 441, 714
BstMBI	GATC	7 cut(s)	33, 124, 311, 568, 595, 600, 961
BstPAI	GACNNNNGTC	1 cut(s)	706
BstPI	GGTNACC	1 cut(s)	752
BstSCI	CCNGG	1 cut(s)	770
BstV1I	GCAGC	2 cut(s)	84, 1034
BstV2I	GAAGAC	2 cut(s)	783, 1044
BstX2I	RGATCY	1 cut(s)	311
BstXI	CCANNNNNNTGG	1 cut(s)	45
BstYI	RGATCY	1 cut(s)	311
BsuRI	GGCC	2 cut(s)	656, 1100
BtsIMutI	CAGTG	2 cut(s)	638, 714
Cac8I	GCNNGC	2 cut(s)	1051, 1129
CciI	TCATGA	1 cut(s)	1081
CfoI	GCGC	1 cut(s)	420
CviAII	CATG	8 cut(s)	31, 67, 386, 535, 566, 864, 1082, 1123
DdeI	CTNAG	7 cut(s)	265, 390, 604, 818, 858, 955, 1026
DpnI	GATC	7 cut(s)	35, 126, 313, 570, 597, 602, 963
DpnII	GATC	7 cut(s)	33, 124, 311, 568, 595, 600, 961
Eam1104I	CTCTTC	1 cut(s)	460
EarI	CTCTTC	1 cut(s)	460
Eco147I	AGGCCT	1 cut(s)	1100
Eco31I	GGTCTC	2 cut(s)	441, 714
Eco57I	CTGAAG	1 cut(s)	961
Eco91I	GGTNACC	1 cut(s)	752
EcoO65I	GGTNACC	1 cut(s)	752
EcoRI	GAATTC	1 cut(s)	775
FaeI	CATG	8 cut(s)	34, 70, 389, 538, 569, 867, 1085, 1126
FalI	AAGNNNNNCTT	2 cut(s)	1029, 1061
FaqI	GGGAC	1 cut(s)	986
FatI	CATG	8 cut(s)	30, 66, 385, 534, 565, 863, 1081, 1122
FbaI	TGATCA	1 cut(s)	568
Fnu4HI	GCNGC	2 cut(s)	73, 1023
Fsp4HI	GCNGC	2 cut(s)	73, 1023
FspBI	CTAG	2 cut(s)	459, 471
GlaI	GCGC	1 cut(s)	419
GluI	GCNGC	2 cut(s)	73, 1023
GsaI	CCCAGC	1 cut(s)	106
HaeII	RGCGCY	1 cut(s)	421
HaeIII	GGCC	2 cut(s)	656, 1100
HapII	CCGG	1 cut(s)	772
HhaI	GCGC	1 cut(s)	420
Hin1II	CATG	8 cut(s)	34, 70, 389, 538, 569, 867, 1085, 1126
Hin6I	GCGC	1 cut(s)	418
HinP1I	GCGC	1 cut(s)	418
HindIII	AAGCTT	1 cut(s)	575
HinfI	GANTC	2 cut(s)	590, 983
HpaII	CCGG	1 cut(s)	772
HphI	GGTGA	3 cut(s)	147, 237, 882
Hpy166II	GTNNAC	1 cut(s)	331
Hpy188III	TCNNGA	6 cut(s)	281, 440, 488, 530, 667, 1082
Hpy8I	GTNNAC	1 cut(s)	331
Hpy99I	CGWCG	1 cut(s)	901
HpyAV	CCTTC	5 cut(s)	348, 539, 682, 742, 1052
HpyCH4III	ACNGT	2 cut(s)	383, 718
HpyCH4V	TGCA	1 cut(s)	378
HpyF3I	CTNAG	7 cut(s)	265, 390, 604, 818, 858, 955, 1026
Hsp92II	CATG	8 cut(s)	34, 70, 389, 538, 569, 867, 1085, 1126
HspAI	GCGC	1 cut(s)	418
Ksp22I	TGATCA	1 cut(s)	568
Kzo9I	GATC	7 cut(s)	33, 124, 311, 568, 595, 600, 961
LguI	GCTCTTC	1 cut(s)	460
Lsp1109I	GCAGC	2 cut(s)	84, 1034
MaeI	CTAG	2 cut(s)	459, 471
MaeIII	GTNAC	2 cut(s)	515, 752
MalI	GATC	7 cut(s)	35, 126, 313, 570, 597, 602, 963
MboI	GATC	7 cut(s)	33, 124, 311, 568, 595, 600, 961
MboII	GAAGA	9 cut(s)	142, 201, 306, 321, 447, 783, 862, 925, 1049
MflI	RGATCY	1 cut(s)	311
MroXI	GAANNNNTTC	2 cut(s)	790, 1041
MseI	TTAA	3 cut(s)	396, 494, 629
MslI	CAYNNNNRTG	2 cut(s)	898, 1136
MspI	CCGG	1 cut(s)	772
MspR9I	CCNGG	1 cut(s)	772
NciI	CCSGG	1 cut(s)	772
NdeII	GATC	7 cut(s)	33, 124, 311, 568, 595, 600, 961
NlaIII	CATG	8 cut(s)	34, 70, 389, 538, 569, 867, 1085, 1126
NlaIV	GGNNCC	1 cut(s)	923
NmuCI	GTSAC	1 cut(s)	515
NspV	TTCGAA	1 cut(s)	784
PagI	TCATGA	1 cut(s)	1081
PceI	AGGCCT	1 cut(s)	1100
PciSI	GCTCTTC	1 cut(s)	460
PdmI	GAANNNNTTC	2 cut(s)	790, 1041
PfeI	GAWTC	2 cut(s)	590, 983
PflMI	CCANNNNNTGG	1 cut(s)	839
PkrI	GCNGC	2 cut(s)	74, 1024
PshAI	GACNNNNGTC	1 cut(s)	706
PshBI	ATTAAT	2 cut(s)	396, 494
PspEI	GGTNACC	1 cut(s)	752
PspFI	CCCAGC	1 cut(s)	102
PspN4I	GGNNCC	1 cut(s)	923
PsuI	RGATCY	1 cut(s)	311
RseI	CAYNNNNRTG	2 cut(s)	898, 1136
SapI	GCTCTTC	1 cut(s)	460
SaqAI	TTAA	3 cut(s)	396, 494, 629
SatI	GCNGC	2 cut(s)	73, 1023
Sau3AI	GATC	7 cut(s)	33, 124, 311, 568, 595, 600, 961
ScrFI	CCNGG	1 cut(s)	772
SfuI	TTCGAA	1 cut(s)	784
SmiMI	CAYNNNNRTG	2 cut(s)	898, 1136
SseBI	AGGCCT	1 cut(s)	1100
SsiI	CCGC	1 cut(s)	941
SspI	AATATT	1 cut(s)	430
SspMI	CTAG	2 cut(s)	459, 471
StuI	AGGCCT	1 cut(s)	1100
StyD4I	CCNGG	1 cut(s)	770
TaaI	ACNGT	2 cut(s)	383, 718
TaqI	TCGA	2 cut(s)	784, 911
TaqII	GACCGA	1 cut(s)	423
TfiI	GAWTC	2 cut(s)	590, 983
Tru1I	TTAA	3 cut(s)	396, 494, 629
Tru9I	TTAA	3 cut(s)	396, 494, 629
TscAI	CASTG	2 cut(s)	645, 721
TseFI	GTSAC	1 cut(s)	515
TseI	GCWGC	2 cut(s)	72, 1022
Tsp45I	GTSAC	1 cut(s)	515
TspDTI	ATGAA	4 cut(s)	551, 558, 666, 1098
TspRI	CASTG	2 cut(s)	645, 721
Van91I	CCANNNNNTGG	1 cut(s)	839
VspI	ATTAAT	2 cut(s)	396, 494
XapI	RAATTY	5 cut(s)	149, 506, 524, 644, 775
XmnI	GAANNNNTTC	2 cut(s)	790, 1041
XspI	CTAG	2 cut(s)	459, 471

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.