DNA repair protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G31970 |
| fragaria_vesca | FvH4_4g13300 |
| malus_domestica | MD05G1230300.v1.1 |
| prunus_persica | Prupe.1G165000_v2.0.a1 Prupe.1G165000_v2.0.a1 Prupe.1G165000_v2.0.a1 Prupe.1G165000_v2.0.a1 Prupe.1G165000_v2.0.a1 |
| pyrus_communis | pycom04g01350 |
| rosa_chinensis | RchiOBHm_Chr4g0413591 |
| rosa_laevigata | RLG00000008210 |
| rosa_multiflora | Rmu_sc0014097.1_g000002 |
| rosa_roxburghii | Rroxscaffold_5G00357470 |
| rosa_rugosa | Rorug04G0121100 |
| rosa_samantha | Rh4AG180900 Rh4BG180100 Rh4CG192000 Rh4DG176200 |
| rosa_wichuraiana | Rw4G015110 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 3 cut(s) | 666, 2919, 3485 |
| AarI | CACCTGC | 1 cut(s) | 3026 |
| Acc36I | ACCTGC | 2 cut(s) | 3026, 3629 |
| AccB1I | GGYRCC | 1 cut(s) | 3563 |
| AccBSI | CCGCTC | 1 cut(s) | 3570 |
| AccII | CGCG | 2 cut(s) | 176, 2010 |
| AciI | CCGC | 7 cut(s) | 833, 2983, 3067, 3198, 3229, 3352, 3568 |
| AclI | AACGTT | 1 cut(s) | 63 |
| AclWI | GGATC | 6 cut(s) | 500, 603, 1698, 2438, 3364, 3791 |
| AcoI | YGGCCR | 2 cut(s) | 494, 3862 |
| AcsI | RAATTY | 5 cut(s) | 966, 1406, 1413, 1492, 3811 |
| AcvI | CACGTG | 1 cut(s) | 3149 |
| AfaI | GTAC | 6 cut(s) | 7, 154, 329, 1159, 1171, 1273 |
| AfeI | AGCGCT | 2 cut(s) | 2099, 2957 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 371 |
| AflII | CTTAAG | 1 cut(s) | 1652 |
| AflIII | ACRYGT | 2 cut(s) | 1830, 3146 |
| AgeI | ACCGGT | 1 cut(s) | 3261 |
| AjiI | CACGTC | 1 cut(s) | 2069 |
| AjnI | CCWGG | 5 cut(s) | 807, 2631, 2712, 2775, 3738 |
| Alw21I | GWGCWC | 3 cut(s) | 845, 2068, 3775 |
| Alw26I | GTCTC | 5 cut(s) | 221, 392, 859, 1578, 3680 |
| AlwI | GGATC | 6 cut(s) | 500, 603, 1698, 2438, 3364, 3791 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 1073, 3281 |
| Ama87I | CYCGRG | 2 cut(s) | 1727, 1806 |
| Aor51HI | AGCGCT | 2 cut(s) | 2099, 2957 |
| ApaI | GGGCCC | 2 cut(s) | 2783, 3750 |
| ApoI | RAATTY | 5 cut(s) | 966, 1406, 1413, 1492, 3811 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 164, 196 |
| AseI | ATTAAT | 1 cut(s) | 360 |
| AsiGI | ACCGGT | 1 cut(s) | 3261 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 1752, 2277, 3243 |
| AspLEI | GCGC | 5 cut(s) | 104, 404, 2100, 2958, 3447 |
| AspS9I | GGNCC | 9 cut(s) | 811, 960, 2773, 2779, 2780, 3746, 3747, 3802, 3931 |
| AsuC2I | CCSGG | 1 cut(s) | 3893 |
| AsuHPI | GGTGA | 5 cut(s) | 1229, 1610, 2585, 3050, 3614 |
| AsuII | TTCGAA | 2 cut(s) | 970, 1410 |
| AsuNHI | GCTAGC | 1 cut(s) | 2123 |
| AvaI | CYCGRG | 2 cut(s) | 1727, 1806 |
| AvaII | GGWCC | 2 cut(s) | 811, 960 |
| AxyI | CCTNAGG | 2 cut(s) | 207, 885 |
| BaeGI | GKGCMC | 2 cut(s) | 2783, 3750 |
| BalI | TGGCCA | 2 cut(s) | 496, 3864 |
| BanI | GGYRCC | 1 cut(s) | 3563 |
| BanII | GRGCYC | 3 cut(s) | 2783, 3750, 3775 |
| BbrPI | CACGTG | 1 cut(s) | 3149 |
| BbsI | GAAGAC | 4 cut(s) | 1640, 2187, 2715, 3798 |
| Bbv12I | GWGCWC | 3 cut(s) | 845, 2068, 3775 |
| BbvCI | CCTCAGC | 1 cut(s) | 1605 |
| BccI | CCATC | 8 cut(s) | 316, 427, 982, 1121, 1222, 1348, 2634, 3737 |
| BceAI | ACGGC | 1 cut(s) | 1290 |
| BciT130I | CCWGG | 5 cut(s) | 809, 2633, 2714, 2777, 3740 |
| BciVI | GTATCC | 2 cut(s) | 1879, 2458 |
| BclI | TGATCA | 2 cut(s) | 24, 3361 |
| BcnI | CCSGG | 1 cut(s) | 3893 |
| BcoDI | GTCTC | 5 cut(s) | 221, 392, 859, 1578, 3680 |
| BfaI | CTAG | 4 cut(s) | 1155, 2124, 2225, 3018 |
| BfmI | CTRYAG | 3 cut(s) | 264, 394, 641 |
| BfoI | RGCGCY | 3 cut(s) | 105, 2101, 2959 |
| BfrI | CTTAAG | 1 cut(s) | 1652 |
| BfuAI | ACCTGC | 2 cut(s) | 3026, 3629 |
| BfuI | GTATCC | 2 cut(s) | 1879, 2458 |
| BglII | AGATCT | 3 cut(s) | 793, 2470, 3939 |
| BmcAI | AGTACT | 1 cut(s) | 1171 |
| Bme1390I | CCNGG | 6 cut(s) | 809, 2633, 2714, 2777, 3740, 3893 |
| Bme18I | GGWCC | 2 cut(s) | 811, 960 |
| BmeT110I | CYCGRG | 2 cut(s) | 1727, 1806 |
| BmgBI | CACGTC | 1 cut(s) | 2069 |
| BmgT120I | GGNCC | 9 cut(s) | 811, 960, 2773, 2779, 2780, 3746, 3747, 3802, 3931 |
| BmiI | GGNNCC | 5 cut(s) | 112, 961, 2781, 3565, 3748 |
| BmrFI | CCNGG | 6 cut(s) | 809, 2633, 2714, 2777, 3740, 3893 |
| BmrI | ACTGGG | 1 cut(s) | 1223 |
| BmtI | GCTAGC | 1 cut(s) | 2127 |
| BmuI | ACTGGG | 1 cut(s) | 1223 |
| BpiI | GAAGAC | 4 cut(s) | 1640, 2187, 2715, 3798 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 670, 702 |
| BpmI | CTGGAG | 7 cut(s) | 237, 393, 791, 1067, 2600, 2615, 2735 |
| Bpu10I | CCTNAGC | 3 cut(s) | 603, 1605, 1983 |
| Bpu14I | TTCGAA | 2 cut(s) | 970, 1410 |
| BpuEI | CTTGAG | 4 cut(s) | 672, 1244, 1493, 2891 |
| BpuMI | CCSGG | 1 cut(s) | 3893 |
| BsaAI | YACGTR | 1 cut(s) | 3149 |
| BsaBI | GATNNNNATC | 2 cut(s) | 1510, 1959 |
| BsaJI | CCNNGG | 6 cut(s) | 2667, 2727, 2769, 2775, 2776, 2790 |
| BsaWI | WCCGGW | 3 cut(s) | 155, 3114, 3261 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 366, 396 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 371 |
| Bse118I | RCCGGY | 1 cut(s) | 3261 |
| Bse1I | ACTGG | 9 cut(s) | 376, 497, 738, 741, 1218, 2406, 2865, 2913, 3604 |
| Bse21I | CCTNAGG | 2 cut(s) | 207, 885 |
| Bse3DI | GCAATG | 1 cut(s) | 681 |
| Bse8I | GATNNNNATC | 2 cut(s) | 1510, 1959 |
| BseBI | CCWGG | 5 cut(s) | 809, 2633, 2714, 2777, 3740 |
| BseDI | CCNNGG | 6 cut(s) | 2667, 2727, 2769, 2775, 2776, 2790 |
| BseGI | GGATG | 6 cut(s) | 280, 487, 1113, 1300, 1432, 3748 |
| BseJI | GATNNNNATC | 2 cut(s) | 1510, 1959 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 371 |
| BseMI | GCAATG | 1 cut(s) | 681 |
| BseNI | ACTGG | 9 cut(s) | 376, 497, 738, 741, 1218, 2406, 2865, 2913, 3604 |
| BseRI | GAGGAG | 4 cut(s) | 1716, 2672, 2744, 3152 |
| BseSI | GKGCMC | 2 cut(s) | 2783, 3750 |
| BseYI | CCCAGC | 1 cut(s) | 2320 |
| BsgI | GTGCAG | 4 cut(s) | 2349, 2426, 3579, 3657 |
| Bsh1236I | CGCG | 2 cut(s) | 176, 2010 |
| Bsh1285I | CGRYCG | 1 cut(s) | 12 |
| BshNI | GGYRCC | 1 cut(s) | 3563 |
| BshTI | ACCGGT | 1 cut(s) | 3261 |
| BsiEI | CGRYCG | 1 cut(s) | 12 |
| BsiHKAI | GWGCWC | 3 cut(s) | 845, 2068, 3775 |
| BsiHKCI | CYCGRG | 2 cut(s) | 1727, 1806 |
| BsiSI | CCGG | 5 cut(s) | 114, 156, 3115, 3262, 3892 |
| BslFI | GGGAC | 2 cut(s) | 973, 2702 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 371 |
| BsmAI | GTCTC | 5 cut(s) | 221, 392, 859, 1578, 3680 |
| BsmBI | CGTCTC | 1 cut(s) | 1578 |
| BsmFI | GGGAC | 2 cut(s) | 973, 2702 |
| BsmI | GAATGC | 1 cut(s) | 2077 |
| BsoBI | CYCGRG | 2 cut(s) | 1727, 1806 |
| Bsp119I | TTCGAA | 2 cut(s) | 970, 1410 |
| Bsp120I | GGGCCC | 2 cut(s) | 2779, 3746 |
| Bsp1286I | GDGCHC | 5 cut(s) | 845, 2068, 2783, 3750, 3775 |
| BspACI | CCGC | 7 cut(s) | 833, 2983, 3067, 3198, 3229, 3352, 3568 |
| BspFNI | CGCG | 2 cut(s) | 176, 2010 |
| BspHI | TCATGA | 2 cut(s) | 199, 2935 |
| BspLI | GGNNCC | 5 cut(s) | 112, 961, 2781, 3565, 3748 |
| BspMAI | CTGCAG | 2 cut(s) | 268, 645 |
| BspMI | ACCTGC | 2 cut(s) | 3026, 3629 |
| BspOI | GCTAGC | 1 cut(s) | 2127 |
| BspPI | GGATC | 6 cut(s) | 500, 603, 1698, 2438, 3364, 3791 |
| BspQI | GCTCTTC | 3 cut(s) | 2310, 3162, 3780 |
| BspT104I | TTCGAA | 2 cut(s) | 970, 1410 |
| BspT107I | GGYRCC | 1 cut(s) | 3563 |
| BspTI | CTTAAG | 1 cut(s) | 1652 |
| BsrBI | CCGCTC | 1 cut(s) | 3570 |
| BsrDI | GCAATG | 1 cut(s) | 681 |
| BsrFI | RCCGGY | 1 cut(s) | 3261 |
| BsrI | ACTGG | 9 cut(s) | 376, 497, 738, 741, 1218, 2406, 2865, 2913, 3604 |
| BssAI | RCCGGY | 1 cut(s) | 3261 |
| BssECI | CCNNGG | 6 cut(s) | 2667, 2727, 2769, 2775, 2776, 2790 |
| BssT1I | CCWWGG | 2 cut(s) | 2667, 2790 |
| Bst2UI | CCWGG | 5 cut(s) | 809, 2633, 2714, 2777, 3740 |
| Bst4CI | ACNGT | 9 cut(s) | 10, 870, 1307, 1423, 2003, 2573, 3277, 3495, 3704 |
| Bst6I | CTCTTC | 6 cut(s) | 1371, 1736, 2112, 2310, 3162, 3780 |
| BstAFI | CTTAAG | 1 cut(s) | 1652 |
| BstBAI | YACGTR | 1 cut(s) | 3149 |
| BstBI | TTCGAA | 2 cut(s) | 970, 1410 |
| BstC8I | GCNNGC | 5 cut(s) | 1058, 2096, 2125, 2646, 3562 |
| BstF5I | GGATG | 6 cut(s) | 280, 487, 1113, 1300, 1432, 3748 |
| BstFNI | CGCG | 2 cut(s) | 176, 2010 |
| BstH2I | RGCGCY | 3 cut(s) | 105, 2101, 2959 |
| BstHHI | GCGC | 5 cut(s) | 104, 404, 2100, 2958, 3447 |
| BstMAI | GTCTC | 5 cut(s) | 221, 392, 859, 1578, 3680 |
| BstMCI | CGRYCG | 1 cut(s) | 12 |
| BstNI | CCWGG | 5 cut(s) | 809, 2633, 2714, 2777, 3740 |
| BstNSI | RCATGY | 3 cut(s) | 1834, 2648, 3878 |
| BstSCI | CCNGG | 6 cut(s) | 807, 2631, 2712, 2775, 3738, 3891 |
| BstSFI | CTRYAG | 3 cut(s) | 264, 394, 641 |
| BstSLI | GKGCMC | 2 cut(s) | 2783, 3750 |
| BstUI | CGCG | 2 cut(s) | 176, 2010 |
| BstV2I | GAAGAC | 4 cut(s) | 1640, 2187, 2715, 3798 |
| BstX2I | RGATCY | 5 cut(s) | 505, 793, 2430, 2470, 3939 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1972 |
| BstYI | RGATCY | 5 cut(s) | 505, 793, 2430, 2470, 3939 |
| Bsu36I | CCTNAGG | 2 cut(s) | 207, 885 |
| BsuI | GTATCC | 2 cut(s) | 1879, 2458 |
| BtrI | CACGTC | 1 cut(s) | 2069 |
| BtsCI | GGATG | 6 cut(s) | 280, 487, 1113, 1300, 1432, 3748 |
| BtsI | GCAGTG | 3 cut(s) | 497, 2193, 3640 |
| BtsIMutI | CAGTG | 9 cut(s) | 369, 497, 748, 1419, 1568, 2193, 2399, 3282, 3640 |
| BveI | ACCTGC | 2 cut(s) | 3026, 3629 |
| Cac8I | GCNNGC | 5 cut(s) | 1058, 2096, 2125, 2646, 3562 |
| CaiI | CAGNNNCTG | 2 cut(s) | 1073, 3281 |
| CciI | TCATGA | 2 cut(s) | 199, 2935 |
| CfoI | GCGC | 5 cut(s) | 104, 404, 2100, 2958, 3447 |
| Cfr10I | RCCGGY | 1 cut(s) | 3261 |
| Cfr13I | GGNCC | 9 cut(s) | 811, 960, 2773, 2779, 2780, 3746, 3747, 3802, 3931 |
| CseI | GACGC | 3 cut(s) | 313, 665, 2024 |
| Csp6I | GTAC | 6 cut(s) | 6, 153, 328, 1158, 1170, 1272 |
| CspAI | ACCGGT | 1 cut(s) | 3261 |
| CviQI | GTAC | 6 cut(s) | 6, 153, 328, 1158, 1170, 1272 |
| DraI | TTTAAA | 2 cut(s) | 141, 1629 |
| EaeI | YGGCCR | 2 cut(s) | 494, 3862 |
| Eam1104I | CTCTTC | 6 cut(s) | 1371, 1736, 2112, 2310, 3162, 3780 |
| EarI | CTCTTC | 6 cut(s) | 1371, 1736, 2112, 2310, 3162, 3780 |
| Ecl136II | GAGCTC | 1 cut(s) | 3773 |
| Eco130I | CCWWGG | 2 cut(s) | 2667, 2790 |
| Eco147I | AGGCCT | 1 cut(s) | 1928 |
| Eco24I | GRGCYC | 3 cut(s) | 2783, 3750, 3775 |
| Eco47I | GGWCC | 2 cut(s) | 811, 960 |
| Eco47III | AGCGCT | 2 cut(s) | 2099, 2957 |
| Eco53kI | GAGCTC | 1 cut(s) | 3773 |
| Eco72I | CACGTG | 1 cut(s) | 3149 |
| Eco81I | CCTNAGG | 2 cut(s) | 207, 885 |
| Eco88I | CYCGRG | 2 cut(s) | 1727, 1806 |
| EcoICRI | GAGCTC | 1 cut(s) | 3773 |
| EcoO109I | RGGNCCY | 2 cut(s) | 2773, 2780 |
| EcoRI | GAATTC | 2 cut(s) | 1406, 1492 |
| EcoRII | CCWGG | 5 cut(s) | 807, 2631, 2712, 2775, 3738 |
| EcoT14I | CCWWGG | 2 cut(s) | 2667, 2790 |
| EcoT38I | GRGCYC | 3 cut(s) | 2783, 3750, 3775 |
| ErhI | CCWWGG | 2 cut(s) | 2667, 2790 |
| Esp3I | CGTCTC | 1 cut(s) | 1578 |
| FalI | AAGNNNNNCTT | 8 cut(s) | 930, 962, 1261, 1293, 1455, 1487, 3341, 3373 |
| FaqI | GGGAC | 2 cut(s) | 973, 2702 |
| FauI | CCCGC | 2 cut(s) | 3222, 3575 |
| FauNDI | CATATG | 1 cut(s) | 1083 |
| FbaI | TGATCA | 2 cut(s) | 24, 3361 |
| FokI | GGATG | 6 cut(s) | 287, 494, 1100, 1307, 1439, 3755 |
| FriOI | GRGCYC | 3 cut(s) | 2783, 3750, 3775 |
| FspBI | CTAG | 4 cut(s) | 1155, 2124, 2225, 3018 |
| GlaI | GCGC | 5 cut(s) | 103, 403, 2099, 2957, 3446 |
| GsaI | CCCAGC | 1 cut(s) | 2324 |
| GsuI | CTGGAG | 7 cut(s) | 237, 393, 791, 1067, 2600, 2615, 2735 |
| HaeII | RGCGCY | 3 cut(s) | 105, 2101, 2959 |
| HapII | CCGG | 5 cut(s) | 114, 156, 3115, 3262, 3892 |
| HgaI | GACGC | 3 cut(s) | 313, 665, 2024 |
| HhaI | GCGC | 5 cut(s) | 104, 404, 2100, 2958, 3447 |
| Hin6I | GCGC | 5 cut(s) | 102, 402, 2098, 2956, 3445 |
| HinP1I | GCGC | 5 cut(s) | 102, 402, 2098, 2956, 3445 |
| HincII | GTYRAC | 4 cut(s) | 303, 994, 1828, 2741 |
| HindII | GTYRAC | 4 cut(s) | 303, 994, 1828, 2741 |
| HindIII | AAGCTT | 5 cut(s) | 40, 668, 1758, 1919, 2483 |
| HpaII | CCGG | 5 cut(s) | 114, 156, 3115, 3262, 3892 |
| HphI | GGTGA | 5 cut(s) | 1229, 1610, 2585, 3050, 3614 |
| Hpy166II | GTNNAC | 9 cut(s) | 303, 994, 1220, 1828, 1858, 2006, 2741, 3041, 3286 |
| Hpy8I | GTNNAC | 9 cut(s) | 303, 994, 1220, 1828, 1858, 2006, 2741, 3041, 3286 |
| Hpy99I | CGWCG | 1 cut(s) | 101 |
| HpyAV | CCTTC | 7 cut(s) | 265, 519, 1174, 1705, 1726, 2656, 3548 |
| HpyCH4III | ACNGT | 9 cut(s) | 10, 870, 1307, 1423, 2003, 2573, 3277, 3495, 3704 |
| HpyCH4IV | ACGT | 8 cut(s) | 63, 462, 1587, 2068, 2614, 2691, 2839, 3148 |
| HpySE526I | ACGT | 8 cut(s) | 63, 462, 1587, 2068, 2614, 2691, 2839, 3148 |
| HspAI | GCGC | 5 cut(s) | 102, 402, 2098, 2956, 3445 |
| Ksp22I | TGATCA | 2 cut(s) | 24, 3361 |
| LguI | GCTCTTC | 3 cut(s) | 2310, 3162, 3780 |
| MaeI | CTAG | 4 cut(s) | 1155, 2124, 2225, 3018 |
| MaeII | ACGT | 8 cut(s) | 63, 462, 1587, 2068, 2614, 2691, 2839, 3148 |
| MaeIII | GTNAC | 5 cut(s) | 67, 1945, 2682, 2692, 2813 |
| MbiI | CCGCTC | 1 cut(s) | 3570 |
| MfeI | CAATTG | 1 cut(s) | 1770 |
| MflI | RGATCY | 5 cut(s) | 505, 793, 2430, 2470, 3939 |
| MhlI | GDGCHC | 5 cut(s) | 845, 2068, 2783, 3750, 3775 |
| MlsI | TGGCCA | 2 cut(s) | 496, 3864 |
| MluNI | TGGCCA | 2 cut(s) | 496, 3864 |
| MlyI | GAGTC | 6 cut(s) | 494, 1922, 1985, 2201, 2201, 2381 |
| MmeI | TCCRAC | 4 cut(s) | 708, 1289, 1953, 3841 |
| Mox20I | TGGCCA | 2 cut(s) | 496, 3864 |
| MroXI | GAANNNNTTC | 3 cut(s) | 1752, 2277, 3243 |
| MscI | TGGCCA | 2 cut(s) | 496, 3864 |
| MslI | CAYNNNNRTG | 2 cut(s) | 470, 480 |
| Msp20I | TGGCCA | 2 cut(s) | 496, 3864 |
| MspA1I | CMGCKG | 3 cut(s) | 263, 2111, 2983 |
| MspCI | CTTAAG | 1 cut(s) | 1652 |
| MspI | CCGG | 5 cut(s) | 114, 156, 3115, 3262, 3892 |
| MspR9I | CCNGG | 6 cut(s) | 809, 2633, 2714, 2777, 3740, 3893 |
| MunI | CAATTG | 1 cut(s) | 1770 |
| Mva1269I | GAATGC | 1 cut(s) | 2077 |
| MvaI | CCWGG | 5 cut(s) | 809, 2633, 2714, 2777, 3740 |
| MvnI | CGCG | 2 cut(s) | 176, 2010 |
| NciI | CCSGG | 1 cut(s) | 3893 |
| NdeI | CATATG | 1 cut(s) | 1083 |
| NheI | GCTAGC | 1 cut(s) | 2123 |
| NlaIV | GGNNCC | 5 cut(s) | 112, 961, 2781, 3565, 3748 |
| NmeAIII | GCCGAG | 2 cut(s) | 2752, 3709 |
| NmuCI | GTSAC | 1 cut(s) | 2813 |
| NspI | RCATGY | 3 cut(s) | 1834, 2648, 3878 |
| NspV | TTCGAA | 2 cut(s) | 970, 1410 |
| PaeI | GCATGC | 1 cut(s) | 2648 |
| PagI | TCATGA | 2 cut(s) | 199, 2935 |
| PaqCI | CACCTGC | 1 cut(s) | 3026 |
| PasI | CCCWGGG | 1 cut(s) | 2776 |
| PceI | AGGCCT | 1 cut(s) | 1928 |
| PciI | ACATGT | 1 cut(s) | 1830 |
| PciSI | GCTCTTC | 3 cut(s) | 2310, 3162, 3780 |
| PctI | GAATGC | 1 cut(s) | 2077 |
| PdmI | GAANNNNTTC | 3 cut(s) | 1752, 2277, 3243 |
| PfoI | TCCNGGA | 1 cut(s) | 807 |
| PinAI | ACCGGT | 1 cut(s) | 3261 |
| PleI | GAGTC | 6 cut(s) | 493, 1921, 1984, 2200, 2201, 2381 |
| PmaCI | CACGTG | 1 cut(s) | 3149 |
| PmlI | CACGTG | 1 cut(s) | 3149 |
| PpsI | GAGTC | 6 cut(s) | 493, 1921, 1984, 2200, 2201, 2381 |
| Ppu21I | YACGTR | 1 cut(s) | 3149 |
| PscI | ACATGT | 1 cut(s) | 1830 |
| PshBI | ATTAAT | 1 cut(s) | 360 |
| PsiI | TTATAA | 3 cut(s) | 666, 2919, 3485 |
| Psp124BI | GAGCTC | 1 cut(s) | 3775 |
| Psp1406I | AACGTT | 1 cut(s) | 63 |
| Psp6I | CCWGG | 5 cut(s) | 807, 2631, 2712, 2775, 3738 |
| PspCI | CACGTG | 1 cut(s) | 3149 |
| PspFI | CCCAGC | 1 cut(s) | 2320 |
| PspGI | CCWGG | 5 cut(s) | 807, 2631, 2712, 2775, 3738 |
| PspN4I | GGNNCC | 5 cut(s) | 112, 961, 2781, 3565, 3748 |
| PspOMI | GGGCCC | 2 cut(s) | 2779, 3746 |
| PspPI | GGNCC | 9 cut(s) | 811, 960, 2773, 2779, 2780, 3746, 3747, 3802, 3931 |
| PstI | CTGCAG | 2 cut(s) | 268, 645 |
| PstNI | CAGNNNCTG | 2 cut(s) | 1073, 3281 |
| PsuI | RGATCY | 5 cut(s) | 505, 793, 2430, 2470, 3939 |
| PvuII | CAGCTG | 2 cut(s) | 263, 2111 |
| RsaI | GTAC | 6 cut(s) | 7, 154, 329, 1159, 1171, 1273 |
| RsaNI | GTAC | 6 cut(s) | 6, 153, 328, 1158, 1170, 1272 |
| RseI | CAYNNNNRTG | 2 cut(s) | 470, 480 |
| SacI | GAGCTC | 1 cut(s) | 3775 |
| SapI | GCTCTTC | 3 cut(s) | 2310, 3162, 3780 |
| Sau96I | GGNCC | 9 cut(s) | 811, 960, 2773, 2779, 2780, 3746, 3747, 3802, 3931 |
| ScaI | AGTACT | 1 cut(s) | 1171 |
| SchI | GAGTC | 6 cut(s) | 494, 1922, 1985, 2201, 2201, 2381 |
| ScrFI | CCNGG | 6 cut(s) | 809, 2633, 2714, 2777, 3740, 3893 |
| SduI | GDGCHC | 5 cut(s) | 845, 2068, 2783, 3750, 3775 |
| SfcI | CTRYAG | 3 cut(s) | 264, 394, 641 |
| SfuI | TTCGAA | 2 cut(s) | 970, 1410 |
| SinI | GGWCC | 2 cut(s) | 811, 960 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 470, 480 |
| SmlI | CTYRAG | 5 cut(s) | 687, 1223, 1472, 1652, 2906 |
| SmoI | CTYRAG | 5 cut(s) | 687, 1223, 1472, 1652, 2906 |
| SphI | GCATGC | 1 cut(s) | 2648 |
| SseBI | AGGCCT | 1 cut(s) | 1928 |
| SsiI | CCGC | 7 cut(s) | 833, 2983, 3067, 3198, 3229, 3352, 3568 |
| SspI | AATATT | 4 cut(s) | 3177, 3184, 3711, 3887 |
| SspMI | CTAG | 4 cut(s) | 1155, 2124, 2225, 3018 |
| SstI | GAGCTC | 1 cut(s) | 3775 |
| StuI | AGGCCT | 1 cut(s) | 1928 |
| StyD4I | CCNGG | 6 cut(s) | 807, 2631, 2712, 2775, 3738, 3891 |
| StyI | CCWWGG | 2 cut(s) | 2667, 2790 |
| TaaI | ACNGT | 9 cut(s) | 10, 870, 1307, 1423, 2003, 2573, 3277, 3495, 3704 |
| TaiI | ACGT | 8 cut(s) | 66, 465, 1590, 2071, 2617, 2694, 2842, 3151 |
| TaqII | GACCGA | 1 cut(s) | 2783 |
| TatI | WGTACW | 2 cut(s) | 327, 1169 |
| TauI | GCSGC | 2 cut(s) | 3200, 3355 |
| TscAI | CASTG | 9 cut(s) | 376, 504, 748, 1426, 1575, 2193, 2406, 3282, 3640 |
| TseFI | GTSAC | 1 cut(s) | 2813 |
| Tsp45I | GTSAC | 1 cut(s) | 2813 |
| TspGWI | ACGGA | 3 cut(s) | 123, 239, 1652 |
| TspRI | CASTG | 9 cut(s) | 376, 504, 748, 1426, 1575, 2193, 2406, 3282, 3640 |
| Vha464I | CTTAAG | 1 cut(s) | 1652 |
| VpaK11BI | GGWCC | 2 cut(s) | 811, 960 |
| VspI | ATTAAT | 1 cut(s) | 360 |
| XapI | RAATTY | 5 cut(s) | 966, 1406, 1413, 1492, 3811 |
| XceI | RCATGY | 3 cut(s) | 1834, 2648, 3878 |
| XmnI | GAANNNNTTC | 3 cut(s) | 1752, 2277, 3243 |
| XspI | CTAG | 4 cut(s) | 1155, 2124, 2225, 3018 |
| ZrmI | AGTACT | 1 cut(s) | 1171 |