AT2G33180

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0011416
Physical Location & Seq
Forward (+)
14066125 .. 14067576
1452 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G33180.1

Sequence Viewer

Length: 501 bp
ATGGAACTGGTGTCTCTTCCGATCCACCACCGTACGGCGCCGCCGAATTTTCCACCACTCGAAACTGGAAATCCAGTAGCTAACCGGATTGGACAAGCTCTACGATTCAGCAATGTTAGAATGAGAAAGCCCGCGTATTTAGGAACGATCTTATCTGAGAAATCAAGAGCAAGAACATTAACGACGGCGGAAGCAGTTTCCGGAAGTGGAGTTTCGCTTCCGCCGCTGGATTTGACTGAGGATAATATCCATTTGGTACTATCCGAAGCTCGTATCGAGCTAGCACAACTCTTCGACTCATCGGTTGGGATAACAGGACAAGTAGAGTTAGTGGAACTAGACGGACCATTCGTTACGATAAGTTTAAGAGGCAAGTTTTGGCATACGCGTGCAATGGTTCTAGCTCGACTTGGGAACTACTTAAAACAGAGGATCCCTGAGATTTTGGAGGTTAATATTGAAGATGAAAAGCAACTCGATGATAGTCCTGCAAATTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

166

Amino Acids

18.36

Weight (kDa)

5.81

Isoelectric Point (pI)

50.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011416)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G33180
fragaria_vesca FvH4_6g20030 FvH4_6g20030 FvH4_6g20030
malus_domestica MD12G1037400.v1.1
prunus_persica Prupe.7G097800_v2.0.a1 Prupe.7G097800_v2.0.a1
pyrus_communis pycom12g03240
rosa_chinensis RchiOBHm_Chr3g0475481
rosa_laevigata RLG00000023841
rosa_multiflora Rmu_sc0015717.1_g000002 Rmu_sc0016637.1_g000011
rosa_roxburghii Rroxscaffold_6G00406280
rosa_rugosa Rorug03G0149100 Rorug03G0149200
rosa_samantha Rh3AG199400 Rh3BG229200 Rh3CG223600 Rh3DG224500
rosa_wichuraiana Rw3G018080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 37
AccII CGCG 2 cut(s) 134, 388
AccIII TCCGGA 1 cut(s) 200
AciI CCGC 5 cut(s) 41, 132, 188, 221, 224
AclWI GGATC 3 cut(s) 16, 427, 440
AcsI RAATTY 2 cut(s) 46, 493
AcyI GRCGYC 1 cut(s) 38
AfaI GTAC 2 cut(s) 34, 258
AfiI CCNNNNNNNGG 1 cut(s) 34
AflIII ACRYGT 1 cut(s) 386
AgsI TTSAA 1 cut(s) 461
AluBI AGCT 5 cut(s) 80, 98, 269, 280, 404
AluI AGCT 5 cut(s) 80, 98, 269, 280, 404
Alw26I GTCTC 1 cut(s) 18
AlwI GGATC 3 cut(s) 16, 427, 440
Aor13HI TCCGGA 1 cut(s) 200
ApoI RAATTY 2 cut(s) 46, 493
ArsI GACNNNNNNTTYG 2 cut(s) 332, 364
AspLEI GCGC 1 cut(s) 40
AspS9I GGNCC 1 cut(s) 344
AsuNHI GCTAGC 1 cut(s) 280
AvaII GGWCC 1 cut(s) 344
BamHI GGATCC 1 cut(s) 432
BanI GGYRCC 1 cut(s) 37
BceAI ACGGC 2 cut(s) 51, 201
BcoDI GTCTC 1 cut(s) 18
BfaI CTAG 3 cut(s) 281, 338, 401
BfoI RGCGCY 1 cut(s) 41
BisI GCNGC 2 cut(s) 41, 224
BlsI GCNGC 2 cut(s) 42, 225
Bme18I GGWCC 1 cut(s) 344
BmgT120I GGNCC 1 cut(s) 344
BmiI GGNNCC 2 cut(s) 39, 434
BmtI GCTAGC 1 cut(s) 284
BsaHI GRCGYC 1 cut(s) 38
BsaWI WCCGGW 2 cut(s) 84, 200
Bsc4I CCNNNNNNNGG 1 cut(s) 34
Bse1I ACTGG 3 cut(s) 12, 70, 74
Bse3DI GCAATG 2 cut(s) 118, 399
BseAI TCCGGA 1 cut(s) 200
BseLI CCNNNNNNNGG 1 cut(s) 34
BseMI GCAATG 2 cut(s) 118, 399
BseMII CTCAG 3 cut(s) 147, 228, 429
BseNI ACTGG 3 cut(s) 12, 70, 74
Bsh1236I CGCG 2 cut(s) 134, 388
BshNI GGYRCC 1 cut(s) 37
BsiSI CCGG 2 cut(s) 85, 201
BsiWI CGTACG 1 cut(s) 32
BslI CCNNNNNNNGG 1 cut(s) 34
BsmAI GTCTC 1 cut(s) 18
Bsp13I TCCGGA 1 cut(s) 200
Bsp143I GATC 3 cut(s) 21, 147, 432
BspACI CCGC 5 cut(s) 41, 132, 188, 221, 224
BspCNI CTCAG 3 cut(s) 148, 229, 430
BspEI TCCGGA 1 cut(s) 200
BspFNI CGCG 2 cut(s) 134, 388
BspLI GGNNCC 2 cut(s) 39, 434
BspOI GCTAGC 1 cut(s) 284
BspPI GGATC 3 cut(s) 16, 427, 440
BspT107I GGYRCC 1 cut(s) 37
BsrDI GCAATG 2 cut(s) 118, 399
BsrI ACTGG 3 cut(s) 12, 70, 74
BssMI GATC 3 cut(s) 21, 147, 432
BssNI GRCGYC 1 cut(s) 38
Bst4CI ACNGT 1 cut(s) 32
Bst6I CTCTTC 2 cut(s) 21, 296
BstACI GRCGYC 1 cut(s) 38
BstC8I GCNNGC 3 cut(s) 132, 282, 390
BstDEI CTNAG 3 cut(s) 156, 237, 438
BstFNI CGCG 2 cut(s) 134, 388
BstH2I RGCGCY 1 cut(s) 41
BstHHI GCGC 1 cut(s) 40
BstKTI GATC 3 cut(s) 24, 150, 435
BstMAI GTCTC 1 cut(s) 18
BstMBI GATC 3 cut(s) 21, 147, 432
BstMWI GCNNNNNNNGC 1 cut(s) 223
BstUI CGCG 2 cut(s) 134, 388
BstX2I RGATCY 1 cut(s) 432
BstYI RGATCY 1 cut(s) 432
Cac8I GCNNGC 3 cut(s) 132, 282, 390
CfoI GCGC 1 cut(s) 40
Cfr13I GGNCC 1 cut(s) 344
Csp6I GTAC 2 cut(s) 33, 257
CviJI RGCY 6 cut(s) 80, 98, 130, 269, 280, 404
CviKI_1 RGCY 6 cut(s) 80, 98, 130, 269, 280, 404
CviQI GTAC 2 cut(s) 33, 257
DdeI CTNAG 3 cut(s) 156, 237, 438
DinI GGCGCC 1 cut(s) 39
DpnI GATC 3 cut(s) 23, 149, 434
DpnII GATC 3 cut(s) 21, 147, 432
Eam1104I CTCTTC 2 cut(s) 21, 296
EarI CTCTTC 2 cut(s) 21, 296
EciI GGCGGA 2 cut(s) 203, 210
Eco47I GGWCC 1 cut(s) 344
EgeI GGCGCC 1 cut(s) 39
EheI GGCGCC 1 cut(s) 39
FaiI YATR 1 cut(s) 384
FauI CCCGC 1 cut(s) 139
Fnu4HI GCNGC 2 cut(s) 41, 224
Fsp4HI GCNGC 2 cut(s) 41, 224
FspBI CTAG 3 cut(s) 281, 338, 401
GlaI GCGC 1 cut(s) 39
GluI GCNGC 2 cut(s) 41, 224
HaeII RGCGCY 1 cut(s) 41
HapII CCGG 2 cut(s) 85, 201
HhaI GCGC 1 cut(s) 40
Hin1I GRCGYC 1 cut(s) 38
Hin6I GCGC 1 cut(s) 38
HinP1I GCGC 1 cut(s) 38
HinfI GANTC 2 cut(s) 105, 296
HpaII CCGG 2 cut(s) 85, 201
Hpy188I TCNGA 3 cut(s) 21, 157, 265
Hpy188III TCNNGA 2 cut(s) 165, 201
Hpy99I CGWCG 1 cut(s) 187
HpyCH4III ACNGT 1 cut(s) 32
HpyCH4V TGCA 2 cut(s) 392, 491
HpyF10VI GCNNNNNNNGC 1 cut(s) 223
HpyF3I CTNAG 3 cut(s) 156, 237, 438
Hsp92I GRCGYC 1 cut(s) 38
HspAI GCGC 1 cut(s) 38
KasI GGCGCC 1 cut(s) 37
Kpn2I TCCGGA 1 cut(s) 200
Kzo9I GATC 3 cut(s) 21, 147, 432
LpnPI CCDG 7 cut(s) 51, 87, 98, 212, 214, 300, 450
MaeI CTAG 3 cut(s) 281, 338, 401
MaeIII GTNAC 1 cut(s) 352
MalI GATC 3 cut(s) 23, 149, 434
MboI GATC 3 cut(s) 21, 147, 432
MboII GAAGA 3 cut(s) 8, 283, 473
MflI RGATCY 1 cut(s) 432
MluCI AATT 2 cut(s) 46, 493
MluI ACGCGT 1 cut(s) 386
Mly113I GGCGCC 1 cut(s) 38
MlyI GAGTC 1 cut(s) 290
MnlI CCTC 4 cut(s) 232, 362, 423, 442
MroI TCCGGA 1 cut(s) 200
MseI TTAA 4 cut(s) 179, 365, 422, 453
MslI CAYNNNNRTG 1 cut(s) 387
MspA1I CMGCKG 1 cut(s) 226
MspI CCGG 2 cut(s) 85, 201
MvnI CGCG 2 cut(s) 134, 388
MwoI GCNNNNNNNGC 1 cut(s) 223
NarI GGCGCC 1 cut(s) 38
NdeII GATC 3 cut(s) 21, 147, 432
NheI GCTAGC 1 cut(s) 280
NlaIV GGNNCC 2 cut(s) 39, 434
PcsI WCGNNNNNNNCGW 2 cut(s) 41, 348
PfeI GAWTC 1 cut(s) 105
Pfl23II CGTACG 1 cut(s) 32
PkrI GCNGC 2 cut(s) 42, 225
PleI GAGTC 1 cut(s) 290
PluTI GGCGCC 1 cut(s) 41
PpsI GAGTC 1 cut(s) 290
PspLI CGTACG 1 cut(s) 32
PspN4I GGNNCC 2 cut(s) 39, 434
PspPI GGNCC 1 cut(s) 344
PsuI RGATCY 1 cut(s) 432
RsaI GTAC 2 cut(s) 34, 258
RsaNI GTAC 2 cut(s) 33, 257
RseI CAYNNNNRTG 1 cut(s) 387
SaqAI TTAA 4 cut(s) 179, 365, 422, 453
SatI GCNGC 2 cut(s) 41, 224
Sau3AI GATC 3 cut(s) 21, 147, 432
Sau96I GGNCC 1 cut(s) 344
SchI GAGTC 1 cut(s) 290
SetI ASST 6 cut(s) 82, 100, 271, 282, 406, 453
SfoI GGCGCC 1 cut(s) 39
SinI GGWCC 1 cut(s) 344
SmiMI CAYNNNNRTG 1 cut(s) 387
Sse9I AATT 2 cut(s) 46, 493
SsiI CCGC 5 cut(s) 41, 132, 188, 221, 224
SspDI GGCGCC 1 cut(s) 37
SspI AATATT 1 cut(s) 457
SspMI CTAG 3 cut(s) 281, 338, 401
TaaI ACNGT 1 cut(s) 32
TaqI TCGA 5 cut(s) 60, 276, 294, 406, 477
TasI AATT 2 cut(s) 46, 493
TauI GCSGC 2 cut(s) 43, 226
TfiI GAWTC 1 cut(s) 105
Tru1I TTAA 4 cut(s) 179, 365, 422, 453
Tru9I TTAA 4 cut(s) 179, 365, 422, 453
TspDTI ATGAA 1 cut(s) 480
TspGWI ACGGA 1 cut(s) 357
VpaK11BI GGWCC 1 cut(s) 344
XapI RAATTY 2 cut(s) 46, 493
XspI CTAG 3 cut(s) 281, 338, 401
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.