Rorug03G0149200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0011416
Physical Location & Seq
Reverse (-)
12291246 .. 12292937
1692 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0149200.1

Sequence Viewer

Length: 468 bp
ATGCAGCGAGGCCAAAAGCGCAGAGAAGACTCGGTTCTCGCCGGAATTGAAGAATCTCTTCACTCTGGAATCTCCGTCGTTCACTCTGGTTTTGGCGCGGAGGTATTCGGCGGCGAGGCGGGAGTGGAGAGACTTGATTCTATCCTGATTCTGGTCCAGCACAATTGCGTCCAGCCCTTTACCCAAGAATCCAAGGCTGGGCGTAAAGTTCAGTACATTGCGGTGTATGATATAACATACTCCATCGACTTAGCACGGCAGACTTACACAACAACAATTAATGGACAGAGCCAATCAAAATCCAAATCAAATAGCAGTCAAGTTCAGAATGCTGCTCAAGATAACTTTGTTAGACTTGTGACTGCTCGTTTTGTTGAACGTTGCCCGGCCCCTGAACCACTTCTTGAAGAAGCACCTGAACAAGAAGGTCCAAAGAAGCCACGCTCTAAATCTGCTAAGGAATTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

155

Amino Acids

17.08

Weight (kDa)

6.84

Isoelectric Point (pI)

54.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011416)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G33180
fragaria_vesca FvH4_6g20030 FvH4_6g20030 FvH4_6g20030
malus_domestica MD12G1037400.v1.1
prunus_persica Prupe.7G097800_v2.0.a1 Prupe.7G097800_v2.0.a1
pyrus_communis pycom12g03240
rosa_chinensis RchiOBHm_Chr3g0475481
rosa_laevigata RLG00000023841
rosa_multiflora Rmu_sc0015717.1_g000002 Rmu_sc0016637.1_g000011
rosa_roxburghii Rroxscaffold_6G00406280
rosa_rugosa Rorug03G0149100 Rorug03G0149200
rosa_samantha Rh3AG199400 Rh3BG229200 Rh3CG223600 Rh3DG224500
rosa_wichuraiana Rw3G018080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 98
AciI CCGC 4 cut(s) 98, 111, 119, 221
AclI AACGTT 1 cut(s) 379
AfaI GTAC 1 cut(s) 215
AfiI CCNNNNNNNGG 2 cut(s) 151, 198
AgsI TTSAA 3 cut(s) 50, 377, 407
Alw26I GTCTC 1 cut(s) 124
AoxI GGCC 2 cut(s) 10, 387
ApeKI GCWGC 2 cut(s) 4, 332
AseI ATTAAT 1 cut(s) 279
Asp700I GAANNNNTTC 2 cut(s) 57, 399
AspLEI GCGC 2 cut(s) 21, 98
AspS9I GGNCC 3 cut(s) 154, 388, 428
AsuC2I CCSGG 1 cut(s) 386
AvaII GGWCC 2 cut(s) 154, 428
BbsI GAAGAC 1 cut(s) 33
BbvI GCAGC 2 cut(s) 16, 319
BccI CCATC 1 cut(s) 251
BceAI ACGGC 1 cut(s) 272
BcnI CCSGG 1 cut(s) 386
BcoDI GTCTC 1 cut(s) 124
BisI GCNGC 3 cut(s) 5, 112, 333
BlsI GCNGC 3 cut(s) 6, 113, 334
Bme1390I CCNGG 1 cut(s) 386
Bme18I GGWCC 2 cut(s) 154, 428
BmgT120I GGNCC 3 cut(s) 154, 388, 428
BmiI GGNNCC 1 cut(s) 390
BmrFI CCNGG 1 cut(s) 386
BpiI GAAGAC 1 cut(s) 33
Bpu10I CCTNAGC 1 cut(s) 456
BpuEI CTTGAG 1 cut(s) 321
BpuMI CCSGG 1 cut(s) 386
BsaJI CCNNGG 1 cut(s) 192
Bsc4I CCNNNNNNNGG 2 cut(s) 151, 198
Bse3DI GCAATG 1 cut(s) 216
BseDI CCNNGG 1 cut(s) 192
BseLI CCNNNNNNNGG 2 cut(s) 151, 198
BseMI GCAATG 1 cut(s) 216
BseXI GCAGC 2 cut(s) 16, 319
BseYI CCCAGC 1 cut(s) 197
Bsh1236I CGCG 1 cut(s) 98
BshFI GGCC 2 cut(s) 12, 389
BsiSI CCGG 2 cut(s) 42, 386
BslI CCNNNNNNNGG 2 cut(s) 151, 198
BsmAI GTCTC 1 cut(s) 124
BsmI GAATGC 1 cut(s) 334
BsnI GGCC 2 cut(s) 12, 389
BspACI CCGC 4 cut(s) 98, 111, 119, 221
BspANI GGCC 2 cut(s) 12, 389
BspFNI CGCG 1 cut(s) 98
BspLI GGNNCC 1 cut(s) 390
BsrDI GCAATG 1 cut(s) 216
BssECI CCNNGG 1 cut(s) 192
BssT1I CCWWGG 1 cut(s) 192
Bst6I CTCTTC 1 cut(s) 63
BstDEI CTNAG 2 cut(s) 250, 456
BstFNI CGCG 1 cut(s) 98
BstHHI GCGC 2 cut(s) 21, 98
BstMAI GTCTC 1 cut(s) 124
BstMWI GCNNNNNNNGC 1 cut(s) 18
BstSCI CCNGG 1 cut(s) 384
BstUI CGCG 1 cut(s) 98
BstV1I GCAGC 2 cut(s) 16, 319
BstV2I GAAGAC 1 cut(s) 33
BsuRI GGCC 2 cut(s) 12, 389
CfoI GCGC 2 cut(s) 21, 98
Cfr13I GGNCC 3 cut(s) 154, 388, 428
CseI GACGC 1 cut(s) 157
Csp6I GTAC 1 cut(s) 214
CviJI RGCY 6 cut(s) 12, 175, 197, 291, 389, 439
CviKI_1 RGCY 6 cut(s) 12, 175, 197, 291, 389, 439
CviQI GTAC 1 cut(s) 214
DdeI CTNAG 2 cut(s) 250, 456
Eam1104I CTCTTC 1 cut(s) 63
EarI CTCTTC 1 cut(s) 63
Eco130I CCWWGG 1 cut(s) 192
Eco47I GGWCC 2 cut(s) 154, 428
EcoT14I CCWWGG 1 cut(s) 192
ErhI CCWWGG 1 cut(s) 192
FaiI YATR 4 cut(s) 228, 233, 238, 466
FalI AAGNNNNNCTT 2 cut(s) 42, 74
FauI CCCGC 1 cut(s) 112
Fnu4HI GCNGC 3 cut(s) 5, 112, 333
Fsp4HI GCNGC 3 cut(s) 5, 112, 333
GlaI GCGC 2 cut(s) 20, 97
GluI GCNGC 3 cut(s) 5, 112, 333
GsaI CCCAGC 1 cut(s) 201
HaeIII GGCC 2 cut(s) 12, 389
HapII CCGG 2 cut(s) 42, 386
HgaI GACGC 1 cut(s) 157
HhaI GCGC 2 cut(s) 21, 98
Hin6I GCGC 2 cut(s) 19, 96
HinP1I GCGC 2 cut(s) 19, 96
HinfI GANTC 6 cut(s) 29, 53, 69, 137, 148, 188
HpaII CCGG 2 cut(s) 42, 386
Hpy166II GTNNAC 1 cut(s) 82
Hpy188I TCNGA 1 cut(s) 327
Hpy188III TCNNGA 4 cut(s) 66, 145, 338, 404
Hpy8I GTNNAC 1 cut(s) 82
Hpy99I CGWCG 1 cut(s) 80
HpyAV CCTTC 1 cut(s) 419
HpyCH4IV ACGT 1 cut(s) 379
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 1 cut(s) 18
HpyF3I CTNAG 2 cut(s) 250, 456
HpySE526I ACGT 1 cut(s) 379
HspAI GCGC 2 cut(s) 19, 96
Lsp1109I GCAGC 2 cut(s) 16, 319
MaeII ACGT 1 cut(s) 379
MaeIII GTNAC 1 cut(s) 358
MboII GAAGA 4 cut(s) 38, 50, 62, 419
MfeI CAATTG 1 cut(s) 163
MluCI AATT 4 cut(s) 45, 163, 276, 461
MlyI GAGTC 1 cut(s) 23
MnlI CCTC 2 cut(s) 94, 109
MroXI GAANNNNTTC 2 cut(s) 57, 399
MseI TTAA 1 cut(s) 279
MslI CAYNNNNRTG 1 cut(s) 221
MspI CCGG 2 cut(s) 42, 386
MspR9I CCNGG 1 cut(s) 386
MunI CAATTG 1 cut(s) 163
Mva1269I GAATGC 1 cut(s) 334
MvnI CGCG 1 cut(s) 98
MwoI GCNNNNNNNGC 1 cut(s) 18
NciI CCSGG 1 cut(s) 386
NlaIV GGNNCC 1 cut(s) 390
NmuCI GTSAC 1 cut(s) 358
PctI GAATGC 1 cut(s) 334
PdmI GAANNNNTTC 2 cut(s) 57, 399
PfeI GAWTC 5 cut(s) 53, 69, 137, 148, 188
PkrI GCNGC 3 cut(s) 6, 113, 334
PleI GAGTC 1 cut(s) 23
PpsI GAGTC 1 cut(s) 23
PshBI ATTAAT 1 cut(s) 279
Psp1406I AACGTT 1 cut(s) 379
PspFI CCCAGC 1 cut(s) 197
PspN4I GGNNCC 1 cut(s) 390
PspPI GGNCC 3 cut(s) 154, 388, 428
RsaI GTAC 1 cut(s) 215
RsaNI GTAC 1 cut(s) 214
RseI CAYNNNNRTG 1 cut(s) 221
SaqAI TTAA 1 cut(s) 279
SatI GCNGC 3 cut(s) 5, 112, 333
Sau96I GGNCC 3 cut(s) 154, 388, 428
SchI GAGTC 1 cut(s) 23
ScrFI CCNGG 1 cut(s) 386
SetI ASST 4 cut(s) 105, 382, 418, 430
SinI GGWCC 2 cut(s) 154, 428
SmiMI CAYNNNNRTG 1 cut(s) 221
SmlI CTYRAG 1 cut(s) 336
SmoI CTYRAG 1 cut(s) 336
Sse9I AATT 4 cut(s) 45, 163, 276, 461
SsiI CCGC 4 cut(s) 98, 111, 119, 221
StyD4I CCNGG 1 cut(s) 384
StyI CCWWGG 1 cut(s) 192
TaiI ACGT 1 cut(s) 382
TaqI TCGA 1 cut(s) 246
TasI AATT 4 cut(s) 45, 163, 276, 461
TatI WGTACW 1 cut(s) 213
TauI GCSGC 1 cut(s) 114
TfiI GAWTC 5 cut(s) 53, 69, 137, 148, 188
Tru1I TTAA 1 cut(s) 279
Tru9I TTAA 1 cut(s) 279
TseFI GTSAC 1 cut(s) 358
TseI GCWGC 2 cut(s) 4, 332
Tsp45I GTSAC 1 cut(s) 358
TspGWI ACGGA 1 cut(s) 64
VpaK11BI GGWCC 2 cut(s) 154, 428
VspI ATTAAT 1 cut(s) 279
XmnI GAANNNNTTC 2 cut(s) 57, 399
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.