Prupe.7G097800_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0011416
Physical Location & Seq
Reverse (-)
12928069 .. 12930276
2208 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G097800.1

Sequence Viewer

Length: 501 bp
ATGAAGATCAAACCAGTTCTTCATCACAACCACCCCAAAATCACATCAACAACCCCTACACCAGCCCTCCCCATTACTTGTCATCACATCACCAAAACTCAAACCCTGAAAACCCTTAACCCCAACCACACACAAAGCCAGAGGCTGAGGATCTGTACAAACCCAACAACAACCAGAAAGAGATTCTCAACCATATCAGCAGCAACACTTCAGCCTTCACAGCCTCTCGATCTAACTGAAGACAATATCAGACAGGTCTTGGCAGATGCAAGAATTGAATTTGGACAGCTCTTTGACACTTCTGTTGGCATGACAGGGCAAGTTGAACTTGCCGAACTGGACGGGCCCTATGTGAAGATCAGTCTCAAAGGCCGGTTTTGGCACGAGCGCAGTGTGGTTCTGGCTAGACTGGCCAATTATCTCAAGCAGAGGATCCCTGAAATTTTGGAGGTAGATATAGAAGATGAGAAACAATTGGATGACAGCCCTGAAAACTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

167

Amino Acids

18.86

Weight (kDa)

7.86

Isoelectric Point (pI)

50.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011416)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G33180
fragaria_vesca FvH4_6g20030 FvH4_6g20030 FvH4_6g20030
malus_domestica MD12G1037400.v1.1
prunus_persica Prupe.7G097800_v2.0.a1 Prupe.7G097800_v2.0.a1
pyrus_communis pycom12g03240
rosa_chinensis RchiOBHm_Chr3g0475481
rosa_laevigata RLG00000023841
rosa_multiflora Rmu_sc0015717.1_g000002 Rmu_sc0016637.1_g000011
rosa_roxburghii Rroxscaffold_6G00406280
rosa_rugosa Rorug03G0149100 Rorug03G0149200
rosa_samantha Rh3AG199400 Rh3BG229200 Rh3CG223600 Rh3DG224500
rosa_wichuraiana Rw3G018080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 158, 427, 440
AcoI YGGCCR 1 cut(s) 411
AcsI RAATTY 2 cut(s) 278, 441
AcuI CTGAAG 2 cut(s) 194, 258
AfaI GTAC 1 cut(s) 157
AgsI TTSAA 2 cut(s) 278, 326
AluBI AGCT 1 cut(s) 289
AluI AGCT 1 cut(s) 289
Alw26I GTCTC 1 cut(s) 368
AlwI GGATC 3 cut(s) 158, 427, 440
AlwNI CAGNNNCTG 1 cut(s) 145
AoxI GGCC 3 cut(s) 344, 370, 411
ApaI GGGCCC 1 cut(s) 348
ApeKI GCWGC 1 cut(s) 200
ApoI RAATTY 2 cut(s) 278, 441
AspLEI GCGC 1 cut(s) 390
AspS9I GGNCC 2 cut(s) 344, 345
AsuHPI GGTGA 1 cut(s) 82
BaeGI GKGCMC 1 cut(s) 348
BalI TGGCCA 1 cut(s) 413
BamHI GGATCC 1 cut(s) 432
BanII GRGCYC 1 cut(s) 348
BauI CACGAG 1 cut(s) 383
BbsI GAAGAC 1 cut(s) 246
BbvCI CCTCAGC 1 cut(s) 146
BbvI GCAGC 1 cut(s) 212
BcoDI GTCTC 1 cut(s) 368
BfaI CTAG 1 cut(s) 405
BisI GCNGC 1 cut(s) 201
BlsI GCNGC 1 cut(s) 202
BmgT120I GGNCC 2 cut(s) 344, 345
BmiI GGNNCC 2 cut(s) 346, 434
BmsI GCATC 1 cut(s) 256
BpiI GAAGAC 1 cut(s) 246
Bpu10I CCTNAGC 1 cut(s) 146
BpuEI CTTGAG 1 cut(s) 407
BsaXI ACNNNNNCTCC 2 cut(s) 51, 81
Bse118I RCCGGY 1 cut(s) 372
Bse1I ACTGG 3 cut(s) 14, 342, 414
BseGI GGATG 1 cut(s) 484
BseMII CTCAG 1 cut(s) 137
BseNI ACTGG 3 cut(s) 14, 342, 414
BseSI GKGCMC 1 cut(s) 348
BseXI GCAGC 1 cut(s) 212
BshFI GGCC 3 cut(s) 346, 372, 413
BsiSI CCGG 1 cut(s) 373
BsmAI GTCTC 1 cut(s) 368
BsnI GGCC 3 cut(s) 346, 372, 413
Bsp120I GGGCCC 1 cut(s) 344
Bsp1286I GDGCHC 1 cut(s) 348
Bsp1407I TGTACA 1 cut(s) 155
Bsp143I GATC 5 cut(s) 6, 150, 229, 357, 432
BspANI GGCC 3 cut(s) 346, 372, 413
BspCNI CTCAG 1 cut(s) 138
BspLI GGNNCC 2 cut(s) 346, 434
BspPI GGATC 3 cut(s) 158, 427, 440
BsrFI RCCGGY 1 cut(s) 372
BsrGI TGTACA 1 cut(s) 155
BsrI ACTGG 3 cut(s) 14, 342, 414
BssAI RCCGGY 1 cut(s) 372
BssMI GATC 5 cut(s) 6, 150, 229, 357, 432
BssSI CACGAG 1 cut(s) 383
Bst2BI CACGAG 1 cut(s) 383
BstAUI TGTACA 1 cut(s) 155
BstDEI CTNAG 1 cut(s) 146
BstF5I GGATG 1 cut(s) 484
BstHHI GCGC 1 cut(s) 390
BstKTI GATC 5 cut(s) 9, 153, 232, 360, 435
BstMAI GTCTC 1 cut(s) 368
BstMBI GATC 5 cut(s) 6, 150, 229, 357, 432
BstMWI GCNNNNNNNGC 2 cut(s) 220, 410
BstSLI GKGCMC 1 cut(s) 348
BstV1I GCAGC 1 cut(s) 212
BstV2I GAAGAC 1 cut(s) 246
BstX2I RGATCY 2 cut(s) 150, 432
BstYI RGATCY 2 cut(s) 150, 432
BsuRI GGCC 3 cut(s) 346, 372, 413
BtsCI GGATG 1 cut(s) 484
BtsI GCAGTG 1 cut(s) 397
BtsIMutI CAGTG 1 cut(s) 397
CaiI CAGNNNCTG 1 cut(s) 145
CfoI GCGC 1 cut(s) 390
Cfr10I RCCGGY 1 cut(s) 372
Cfr13I GGNCC 2 cut(s) 344, 345
Csp6I GTAC 1 cut(s) 156
CviAII CATG 1 cut(s) 310
CviQI GTAC 1 cut(s) 156
DdeI CTNAG 1 cut(s) 146
DpnI GATC 5 cut(s) 8, 152, 231, 359, 434
DpnII GATC 5 cut(s) 6, 150, 229, 357, 432
EaeI YGGCCR 1 cut(s) 411
Eco24I GRGCYC 1 cut(s) 348
Eco57I CTGAAG 2 cut(s) 194, 258
EcoO109I RGGNCCY 1 cut(s) 345
EcoT38I GRGCYC 1 cut(s) 348
FaeI CATG 1 cut(s) 313
FaiI YATR 4 cut(s) 194, 311, 351, 458
FalI AAGNNNNNCTT 2 cut(s) 312, 344
FatI CATG 1 cut(s) 309
Fnu4HI GCNGC 1 cut(s) 201
FokI GGATG 1 cut(s) 491
FriOI GRGCYC 1 cut(s) 348
Fsp4HI GCNGC 1 cut(s) 201
FspBI CTAG 1 cut(s) 405
GlaI GCGC 1 cut(s) 389
GluI GCNGC 1 cut(s) 201
HaeIII GGCC 3 cut(s) 346, 372, 413
HapII CCGG 1 cut(s) 373
HhaI GCGC 1 cut(s) 390
Hin1II CATG 1 cut(s) 313
Hin6I GCGC 1 cut(s) 388
HinP1I GCGC 1 cut(s) 388
HinfI GANTC 1 cut(s) 183
HpaII CCGG 1 cut(s) 373
HphI GGTGA 1 cut(s) 82
Hpy188I TCNGA 1 cut(s) 251
Hpy188III TCNNGA 1 cut(s) 227
HpyAV CCTTC 1 cut(s) 225
HpyCH4V TGCA 1 cut(s) 269
HpyF10VI GCNNNNNNNGC 2 cut(s) 220, 410
HpyF3I CTNAG 1 cut(s) 146
Hsp92II CATG 1 cut(s) 313
HspAI GCGC 1 cut(s) 388
Kzo9I GATC 5 cut(s) 6, 150, 229, 357, 432
Lsp1109I GCAGC 1 cut(s) 212
LweI GCATC 1 cut(s) 256
MaeI CTAG 1 cut(s) 405
MalI GATC 5 cut(s) 8, 152, 231, 359, 434
MboI GATC 5 cut(s) 6, 150, 229, 357, 432
MboII GAAGA 5 cut(s) 11, 16, 251, 367, 473
MfeI CAATTG 1 cut(s) 473
MflI RGATCY 2 cut(s) 150, 432
MhlI GDGCHC 1 cut(s) 348
MlsI TGGCCA 1 cut(s) 413
MluCI AATT 5 cut(s) 273, 278, 415, 441, 473
MluNI TGGCCA 1 cut(s) 413
MnlI CCTC 6 cut(s) 77, 135, 141, 234, 423, 442
Mox20I TGGCCA 1 cut(s) 413
MscI TGGCCA 1 cut(s) 413
MseI TTAA 1 cut(s) 117
Msp20I TGGCCA 1 cut(s) 413
MspI CCGG 1 cut(s) 373
MunI CAATTG 1 cut(s) 473
MwoI GCNNNNNNNGC 2 cut(s) 220, 410
NdeII GATC 5 cut(s) 6, 150, 229, 357, 432
NlaIII CATG 1 cut(s) 313
NlaIV GGNNCC 2 cut(s) 346, 434
PfeI GAWTC 1 cut(s) 183
PkrI GCNGC 1 cut(s) 202
PspN4I GGNNCC 2 cut(s) 346, 434
PspOMI GGGCCC 1 cut(s) 344
PspPI GGNCC 2 cut(s) 344, 345
PstNI CAGNNNCTG 1 cut(s) 145
PsuI RGATCY 2 cut(s) 150, 432
RsaI GTAC 1 cut(s) 157
RsaNI GTAC 1 cut(s) 156
SaqAI TTAA 1 cut(s) 117
SatI GCNGC 1 cut(s) 201
Sau3AI GATC 5 cut(s) 6, 150, 229, 357, 432
Sau96I GGNCC 2 cut(s) 344, 345
SduI GDGCHC 1 cut(s) 348
SetI ASST 3 cut(s) 258, 291, 453
SfaNI GCATC 1 cut(s) 256
SmlI CTYRAG 1 cut(s) 422
SmoI CTYRAG 1 cut(s) 422
Sse9I AATT 5 cut(s) 273, 278, 415, 441, 473
SspMI CTAG 1 cut(s) 405
TaqI TCGA 1 cut(s) 228
TasI AATT 5 cut(s) 273, 278, 415, 441, 473
TatI WGTACW 1 cut(s) 155
TfiI GAWTC 1 cut(s) 183
Tru1I TTAA 1 cut(s) 117
Tru9I TTAA 1 cut(s) 117
TscAI CASTG 1 cut(s) 397
TseI GCWGC 1 cut(s) 200
TspDTI ATGAA 2 cut(s) 11, 17
TspRI CASTG 1 cut(s) 397
XapI RAATTY 2 cut(s) 278, 441
XspI CTAG 1 cut(s) 405
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.