FvH4_6g20030

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0011416
Physical Location & Seq
Forward (+)
13453037 .. 13455840
2804 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g20030.t3

Sequence Viewer

Length: 513 bp
ATGAGGGTCCAAGGAGTTCATCACCAGAACCACCACATAACATCAACAAAACCAACACCAGTCTTCCCCATTACCCTTTATAATTGCTCCAAAACCCATATCCTGAACAGAGTGAACCACAAGCAAACACAAACGCAAAGGCTAAGGATTTGTGGAATCCCGGCAACACTAGGATCAATATCAAGTAAGAGATTTCCAAGCATATCAACAGCAGCAGCAGCTCAGCCATCACAGCCTCTGGACCTAACAGAAGATAACATTAGACAAGTCTTAGCCGATGCCAGAGACGAATTTGGTCACCTCTTTGACACTTCAGTTGGCATGACAGGACAAGTTGATCTTGCTGATCTAGATGGACCCTTTGTGAAGATCAGTCTCAAAGGCCGGTTTTGGCATGAACGCAGTCTTGTTCTGGCTAGGCTGGCCAACTATCTCAAGAAGAGAATCCCTGAAATTTTGGAGGTCGATATAGAAGATGAGAAACAATTGGACGACAGCCCTGCAAACTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

171

Amino Acids

19.1

Weight (kDa)

7.88

Isoelectric Point (pI)

48.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011416)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G33180
fragaria_vesca FvH4_6g20030 FvH4_6g20030 FvH4_6g20030
malus_domestica MD12G1037400.v1.1
prunus_persica Prupe.7G097800_v2.0.a1 Prupe.7G097800_v2.0.a1
pyrus_communis pycom12g03240
rosa_chinensis RchiOBHm_Chr3g0475481
rosa_laevigata RLG00000023841
rosa_multiflora Rmu_sc0015717.1_g000002 Rmu_sc0016637.1_g000011
rosa_roxburghii Rroxscaffold_6G00406280
rosa_rugosa Rorug03G0149100 Rorug03G0149200
rosa_samantha Rh3AG199400 Rh3BG229200 Rh3CG223600 Rh3DG224500
rosa_wichuraiana Rw3G018080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 81
AclWI GGATC 1 cut(s) 181
AcoI YGGCCR 1 cut(s) 423
AcsI RAATTY 2 cut(s) 290, 453
AcuI CTGAAG 1 cut(s) 297
AluBI AGCT 1 cut(s) 221
AluI AGCT 1 cut(s) 221
Alw26I GTCTC 2 cut(s) 279, 380
AlwI GGATC 1 cut(s) 181
AlwNI CAGNNNCTG 1 cut(s) 238
AoxI GGCC 2 cut(s) 382, 423
ApeKI GCWGC 3 cut(s) 212, 215, 218
ApoI RAATTY 2 cut(s) 290, 453
AspS9I GGNCC 3 cut(s) 7, 241, 356
AsuC2I CCSGG 1 cut(s) 161
AsuHPI GGTGA 2 cut(s) 14, 290
AvaII GGWCC 3 cut(s) 7, 241, 356
BalI TGGCCA 1 cut(s) 425
BbsI GAAGAC 1 cut(s) 55
BbvI GCAGC 3 cut(s) 224, 227, 230
BccI CCATC 2 cut(s) 235, 347
BcgI CGANNNNNNTGC 1 cut(s) 482
BcnI CCSGG 1 cut(s) 161
BcoDI GTCTC 2 cut(s) 279, 380
BfaI CTAG 3 cut(s) 170, 350, 417
BisI GCNGC 3 cut(s) 213, 216, 219
BlpI GCTNAGC 1 cut(s) 222
BlsI GCNGC 3 cut(s) 214, 217, 220
Bme1390I CCNGG 1 cut(s) 161
Bme18I GGWCC 3 cut(s) 7, 241, 356
BmgT120I GGNCC 3 cut(s) 7, 241, 356
BmiI GGNNCC 2 cut(s) 8, 358
BmrFI CCNGG 1 cut(s) 161
BmsI GCATC 1 cut(s) 268
BpiI GAAGAC 1 cut(s) 55
Bpu10I CCTNAGC 1 cut(s) 143
Bpu1102I GCTNAGC 1 cut(s) 222
BpuEI CTTGAG 1 cut(s) 419
BpuMI CCSGG 1 cut(s) 161
BsaBI GATNNNNATC 1 cut(s) 178
BsaJI CCNNGG 1 cut(s) 10
Bse118I RCCGGY 1 cut(s) 384
Bse1I ACTGG 1 cut(s) 59
Bse8I GATNNNNATC 1 cut(s) 178
BseDI CCNNGG 1 cut(s) 10
BseJI GATNNNNATC 1 cut(s) 178
BseMII CTCAG 1 cut(s) 236
BseNI ACTGG 1 cut(s) 59
BseXI GCAGC 3 cut(s) 224, 227, 230
BshFI GGCC 2 cut(s) 384, 425
BsiSI CCGG 2 cut(s) 161, 385
BsmAI GTCTC 2 cut(s) 279, 380
BsmBI CGTCTC 1 cut(s) 279
BsnI GGCC 2 cut(s) 384, 425
Bsp143I GATC 4 cut(s) 173, 337, 346, 369
Bsp1720I GCTNAGC 1 cut(s) 222
BspANI GGCC 2 cut(s) 384, 425
BspCNI CTCAG 1 cut(s) 235
BspLI GGNNCC 2 cut(s) 8, 358
BspPI GGATC 1 cut(s) 181
BsrFI RCCGGY 1 cut(s) 384
BsrI ACTGG 1 cut(s) 59
BssAI RCCGGY 1 cut(s) 384
BssECI CCNNGG 1 cut(s) 10
BssMI GATC 4 cut(s) 173, 337, 346, 369
BssT1I CCWWGG 1 cut(s) 10
Bst6I CTCTTC 1 cut(s) 434
BstC8I GCNNGC 1 cut(s) 423
BstDEI CTNAG 3 cut(s) 143, 222, 271
BstEII GGTNACC 1 cut(s) 296
BstKTI GATC 4 cut(s) 176, 340, 349, 372
BstMAI GTCTC 2 cut(s) 279, 380
BstMBI GATC 4 cut(s) 173, 337, 346, 369
BstMWI GCNNNNNNNGC 3 cut(s) 218, 232, 422
BstPI GGTNACC 1 cut(s) 296
BstSCI CCNGG 1 cut(s) 159
BstV1I GCAGC 3 cut(s) 224, 227, 230
BstV2I GAAGAC 1 cut(s) 55
BsuRI GGCC 2 cut(s) 384, 425
Cac8I GCNNGC 1 cut(s) 423
CaiI CAGNNNCTG 1 cut(s) 238
Cfr10I RCCGGY 1 cut(s) 384
Cfr13I GGNCC 3 cut(s) 7, 241, 356
CviAII CATG 2 cut(s) 322, 395
DdeI CTNAG 3 cut(s) 143, 222, 271
DpnI GATC 4 cut(s) 175, 339, 348, 371
DpnII GATC 4 cut(s) 173, 337, 346, 369
EaeI YGGCCR 1 cut(s) 423
Eam1104I CTCTTC 1 cut(s) 434
EarI CTCTTC 1 cut(s) 434
Eco130I CCWWGG 1 cut(s) 10
Eco47I GGWCC 3 cut(s) 7, 241, 356
Eco57I CTGAAG 1 cut(s) 297
Eco91I GGTNACC 1 cut(s) 296
EcoO65I GGTNACC 1 cut(s) 296
EcoT14I CCWWGG 1 cut(s) 10
ErhI CCWWGG 1 cut(s) 10
Esp3I CGTCTC 1 cut(s) 279
FaeI CATG 2 cut(s) 325, 398
FaiI YATR 7 cut(s) 38, 81, 99, 203, 323, 396, 470
FalI AAGNNNNNCTT 2 cut(s) 324, 356
FatI CATG 2 cut(s) 321, 394
Fnu4HI GCNGC 3 cut(s) 213, 216, 219
Fsp4HI GCNGC 3 cut(s) 213, 216, 219
FspBI CTAG 3 cut(s) 170, 350, 417
GluI GCNGC 3 cut(s) 213, 216, 219
HaeIII GGCC 2 cut(s) 384, 425
HapII CCGG 2 cut(s) 161, 385
Hin1II CATG 2 cut(s) 325, 398
HinfI GANTC 2 cut(s) 156, 444
HpaII CCGG 2 cut(s) 161, 385
HphI GGTGA 2 cut(s) 14, 290
Hpy166II GTNNAC 1 cut(s) 115
Hpy188III TCNNGA 4 cut(s) 103, 239, 350, 436
Hpy8I GTNNAC 1 cut(s) 115
HpyCH4V TGCA 1 cut(s) 503
HpyF10VI GCNNNNNNNGC 3 cut(s) 218, 232, 422
HpyF3I CTNAG 3 cut(s) 143, 222, 271
Hsp92II CATG 2 cut(s) 325, 398
Kzo9I GATC 4 cut(s) 173, 337, 346, 369
LmnI GCTCC 1 cut(s) 92
Lsp1109I GCAGC 3 cut(s) 224, 227, 230
LweI GCATC 1 cut(s) 268
MaeI CTAG 3 cut(s) 170, 350, 417
MaeIII GTNAC 1 cut(s) 296
MalI GATC 4 cut(s) 175, 339, 348, 371
MboI GATC 4 cut(s) 173, 337, 346, 369
MboII GAAGA 5 cut(s) 55, 263, 379, 451, 485
MfeI CAATTG 1 cut(s) 485
MlsI TGGCCA 1 cut(s) 425
MluCI AATT 4 cut(s) 82, 290, 453, 485
MluNI TGGCCA 1 cut(s) 425
MnlI CCTC 3 cut(s) 246, 311, 454
Mox20I TGGCCA 1 cut(s) 425
MscI TGGCCA 1 cut(s) 425
Msp20I TGGCCA 1 cut(s) 425
MspI CCGG 2 cut(s) 161, 385
MspR9I CCNGG 1 cut(s) 161
MunI CAATTG 1 cut(s) 485
MwoI GCNNNNNNNGC 3 cut(s) 218, 232, 422
NciI CCSGG 1 cut(s) 161
NdeII GATC 4 cut(s) 173, 337, 346, 369
NlaIII CATG 2 cut(s) 325, 398
NlaIV GGNNCC 2 cut(s) 8, 358
NmuCI GTSAC 1 cut(s) 296
PfeI GAWTC 2 cut(s) 156, 444
PkrI GCNGC 3 cut(s) 214, 217, 220
PsiI TTATAA 1 cut(s) 81
PspEI GGTNACC 1 cut(s) 296
PspN4I GGNNCC 2 cut(s) 8, 358
PspPI GGNCC 3 cut(s) 7, 241, 356
PstNI CAGNNNCTG 1 cut(s) 238
SatI GCNGC 3 cut(s) 213, 216, 219
Sau3AI GATC 4 cut(s) 173, 337, 346, 369
Sau96I GGNCC 3 cut(s) 7, 241, 356
ScrFI CCNGG 1 cut(s) 161
SetI ASST 4 cut(s) 223, 246, 303, 465
SfaNI GCATC 1 cut(s) 268
SinI GGWCC 3 cut(s) 7, 241, 356
SmlI CTYRAG 1 cut(s) 434
SmoI CTYRAG 1 cut(s) 434
Sse9I AATT 4 cut(s) 82, 290, 453, 485
SspMI CTAG 3 cut(s) 170, 350, 417
StyD4I CCNGG 1 cut(s) 159
StyI CCWWGG 1 cut(s) 10
TaqI TCGA 1 cut(s) 465
TasI AATT 4 cut(s) 82, 290, 453, 485
TfiI GAWTC 2 cut(s) 156, 444
TseFI GTSAC 1 cut(s) 296
TseI GCWGC 3 cut(s) 212, 215, 218
Tsp45I GTSAC 1 cut(s) 296
TspDTI ATGAA 2 cut(s) 8, 411
VpaK11BI GGWCC 3 cut(s) 7, 241, 356
XapI RAATTY 2 cut(s) 290, 453
XbaI TCTAGA 1 cut(s) 349
XspI CTAG 3 cut(s) 170, 350, 417
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.