AT2G33255

Haloacid dehalogenase-like hydrolase domain-containing protein At2g33255

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Forward (+)
14098778 .. 14100623
1846 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G33255.1

Sequence Viewer

Length: 738 bp
ATGACTTTCCTCTTATCAAGAACATTTATTTCTCTCACTCTCAGACCTTCTTGTTCGATTTCCATGGCGAATTTAACGACGAACGCTAAAACTCGCCTGAGAGGTGTTGTATTCGATATGGACGGAACCCTGACTGTTCCGGTCATCGATTTCGCCGCAATGTATAGAGCTGTTCTTGGTGAAGATGCTTACAAGCGAATCAAAGCAGAGAGCCCTAGTGGGATTGATATTCTGCATCATATTGAGTCGTGGAGTCCTGATAAACAGCAGAAGGCGTATGAAATCATTGCTGATTATGAGAAACAAGGAATAGATAAGCTTCAAATCATGCCTGGTACTGCTGAACTATGTGGCTTCCTTGATTCCAAAAAGATAAAGAGGGGGCTAATTACACGCAATGTTCAAAAGGCAATCGACATCTTCCATCAACGTTTTGAGGTTATCTTTTCTCCAGCACTAGGCAGAGAGTTTCGTCCATATAAACCAAACCCAGACCCGCTGTTGCATATATGTTCTACATGGGACATCCAACCTAATGAAGTCATGATGGTTGGTGACAGCTTAAAAGATGATATAGCATGTGGGAAACGAGCTGGAGCCTTCACTTGCTTGCTAGATGAAACCGGAAGGTATGGACCAGACGATTTTTCTGTTTCCGGTCTGCAACCTGATTTTAAGGTTGATTCCTTGTCCAAAATCCAGAACCTATTGGAGACGAACTTCGACCTGAACCCGTAG

Protein Analysis

245

Amino Acids

27.5

Weight (kDa)

5.85

Isoelectric Point (pI)

39.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hydrolase PF00702 34 - 199 4.3e-19 haloacid dehalogenase-like hydrolase
HAD_2 PF13419 36 - 203 1.8e-16 Haloacid dehalogenase-like hydrolase
Hydrolase_like PF13242 161 - 232 3.7e-11 HAD-hyrolase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0016053)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G33255
fragaria_vesca FvH4_4g05140
malus_domestica MD16G1230400.v1.1
prunus_persica Prupe.1G052300_v2.0.a1
pyrus_communis pycom16g19220
rosa_chinensis RchiOBHm_Chr4g0396071
rosa_laevigata RLG00000009575
rosa_multiflora Rmu_sc0006325.1_g000009 Rmu_sc0015594.1_g000003
rosa_roxburghii Rroxscaffold_5G00340870
rosa_rugosa Rorug03G0352800
rosa_samantha Rh4AG065000 Rh4AG065700 Rh4CG070400
rosa_wichuraiana Rw4G005290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 156, 497
AclI AACGTT 1 cut(s) 430
AcsI RAATTY 1 cut(s) 70
AfaI GTAC 1 cut(s) 337
AfiI CCNNNNNNNGG 1 cut(s) 458
AgsI TTSAA 2 cut(s) 323, 404
AjnI CCWGG 1 cut(s) 331
AluBI AGCT 4 cut(s) 170, 319, 561, 593
AluI AGCT 4 cut(s) 170, 319, 561, 593
Alw26I GTCTC 1 cut(s) 707
ApoI RAATTY 1 cut(s) 70
AspS9I GGNCC 1 cut(s) 635
AsuHPI GGTGA 2 cut(s) 191, 566
AvaII GGWCC 1 cut(s) 635
BanII GRGCYC 1 cut(s) 215
BccI CCATC 2 cut(s) 432, 541
BciT130I CCWGG 1 cut(s) 333
BcoDI GTCTC 1 cut(s) 707
BfaI CTAG 3 cut(s) 216, 458, 614
BisI GCNGC 1 cut(s) 156
BlsI GCNGC 1 cut(s) 157
Bme1390I CCNGG 1 cut(s) 333
Bme18I GGWCC 1 cut(s) 635
BmgT120I GGNCC 1 cut(s) 635
BmiI GGNNCC 2 cut(s) 127, 598
BmrFI CCNGG 1 cut(s) 333
BmsI GCATC 2 cut(s) 175, 244
BpmI CTGGAG 2 cut(s) 435, 615
Bsa29I ATCGAT 1 cut(s) 147
BsaJI CCNNGG 1 cut(s) 63
BsaWI WCCGGW 3 cut(s) 139, 623, 656
Bsc4I CCNNNNNNNGG 1 cut(s) 458
Bse3DI GCAATG 3 cut(s) 165, 285, 403
BseBI CCWGG 1 cut(s) 333
BseCI ATCGAT 1 cut(s) 147
BseDI CCNNGG 1 cut(s) 63
BseGI GGATG 1 cut(s) 525
BseLI CCNNNNNNNGG 1 cut(s) 458
BseMI GCAATG 3 cut(s) 165, 285, 403
BseMII CTCAG 2 cut(s) 55, 89
BshVI ATCGAT 1 cut(s) 147
BsiSI CCGG 3 cut(s) 140, 624, 657
BslFI GGGAC 1 cut(s) 536
BslI CCNNNNNNNGG 1 cut(s) 458
BsmAI GTCTC 1 cut(s) 707
BsmBI CGTCTC 1 cut(s) 707
BsmFI GGGAC 1 cut(s) 536
Bsp1286I GDGCHC 1 cut(s) 215
Bsp19I CCATGG 1 cut(s) 63
BspACI CCGC 2 cut(s) 156, 497
BspCNI CTCAG 2 cut(s) 54, 90
BspDI ATCGAT 1 cut(s) 147
BspHI TCATGA 1 cut(s) 543
BspLI GGNNCC 2 cut(s) 127, 598
BsrDI GCAATG 3 cut(s) 165, 285, 403
BssECI CCNNGG 1 cut(s) 63
BssT1I CCWWGG 1 cut(s) 63
Bst2UI CCWGG 1 cut(s) 333
Bst4CI ACNGT 1 cut(s) 136
BstC8I GCNNGC 1 cut(s) 611
BstDEI CTNAG 2 cut(s) 41, 98
BstDSI CCRYGG 1 cut(s) 63
BstF5I GGATG 1 cut(s) 525
BstMAI GTCTC 1 cut(s) 707
BstNI CCWGG 1 cut(s) 333
BstNSI RCATGY 1 cut(s) 582
BstSCI CCNGG 1 cut(s) 331
Bsu15I ATCGAT 1 cut(s) 147
BsuTUI ATCGAT 1 cut(s) 147
BtgI CCRYGG 1 cut(s) 63
BtsCI GGATG 1 cut(s) 525
Cac8I GCNNGC 1 cut(s) 611
CciI TCATGA 1 cut(s) 543
Cfr13I GGNCC 1 cut(s) 635
ClaI ATCGAT 1 cut(s) 147
Csp6I GTAC 1 cut(s) 336
CviAII CATG 5 cut(s) 64, 328, 519, 544, 579
CviJI RGCY 8 cut(s) 170, 213, 319, 354, 385, 561, 593, 599
CviKI_1 RGCY 8 cut(s) 170, 213, 319, 354, 385, 561, 593, 599
CviQI GTAC 1 cut(s) 336
DdeI CTNAG 2 cut(s) 41, 98
Eco130I CCWWGG 1 cut(s) 63
Eco24I GRGCYC 1 cut(s) 215
Eco47I GGWCC 1 cut(s) 635
EcoRII CCWGG 1 cut(s) 331
EcoT14I CCWWGG 1 cut(s) 63
EcoT38I GRGCYC 1 cut(s) 215
ErhI CCWWGG 1 cut(s) 63
Esp3I CGTCTC 1 cut(s) 707
FaeI CATG 5 cut(s) 67, 331, 522, 547, 582
FaqI GGGAC 1 cut(s) 536
FatI CATG 5 cut(s) 63, 327, 518, 543, 578
FauI CCCGC 1 cut(s) 504
Fnu4HI GCNGC 1 cut(s) 156
FokI GGATG 1 cut(s) 512
FriOI GRGCYC 1 cut(s) 215
Fsp4HI GCNGC 1 cut(s) 156
FspBI CTAG 3 cut(s) 216, 458, 614
GluI GCNGC 1 cut(s) 156
GsuI CTGGAG 2 cut(s) 435, 615
HapII CCGG 3 cut(s) 140, 624, 657
Hin1II CATG 5 cut(s) 67, 331, 522, 547, 582
HindIII AAGCTT 1 cut(s) 317
HinfI GANTC 5 cut(s) 198, 245, 253, 362, 683
HpaII CCGG 3 cut(s) 140, 624, 657
HphI GGTGA 2 cut(s) 191, 566
Hpy188I TCNGA 1 cut(s) 44
Hpy188III TCNNGA 4 cut(s) 18, 257, 544, 700
Hpy99I CGWCG 1 cut(s) 82
HpyAV CCTTC 4 cut(s) 57, 265, 610, 621
HpyCH4III ACNGT 1 cut(s) 136
HpyCH4IV ACGT 1 cut(s) 430
HpyCH4V TGCA 3 cut(s) 235, 505, 664
HpyF3I CTNAG 2 cut(s) 41, 98
HpySE526I ACGT 1 cut(s) 430
Hsp92II CATG 5 cut(s) 67, 331, 522, 547, 582
LmnI GCTCC 1 cut(s) 596
LweI GCATC 2 cut(s) 175, 244
MaeI CTAG 3 cut(s) 216, 458, 614
MaeII ACGT 1 cut(s) 430
MaeIII GTNAC 1 cut(s) 554
MboII GAAGA 2 cut(s) 194, 412
MhlI GDGCHC 1 cut(s) 215
MluCI AATT 2 cut(s) 70, 387
MlyI GAGTC 2 cut(s) 254, 262
MmeI TCCRAC 1 cut(s) 553
MnlI CCTC 4 cut(s) 20, 95, 372, 430
MseI TTAA 3 cut(s) 74, 563, 675
MspA1I CMGCKG 1 cut(s) 499
MspI CCGG 3 cut(s) 140, 624, 657
MspR9I CCNGG 1 cut(s) 333
MvaI CCWGG 1 cut(s) 333
NcoI CCATGG 1 cut(s) 63
NlaIII CATG 5 cut(s) 67, 331, 522, 547, 582
NlaIV GGNNCC 2 cut(s) 127, 598
NmuCI GTSAC 1 cut(s) 554
NspI RCATGY 1 cut(s) 582
PagI TCATGA 1 cut(s) 543
PfeI GAWTC 3 cut(s) 198, 362, 683
PkrI GCNGC 1 cut(s) 157
PleI GAGTC 2 cut(s) 253, 261
PpsI GAGTC 2 cut(s) 253, 261
Psp1406I AACGTT 1 cut(s) 430
Psp6I CCWGG 1 cut(s) 331
PspGI CCWGG 1 cut(s) 331
PspN4I GGNNCC 2 cut(s) 127, 598
PspPI GGNCC 1 cut(s) 635
RsaI GTAC 1 cut(s) 337
RsaNI GTAC 1 cut(s) 336
SaqAI TTAA 3 cut(s) 74, 563, 675
SatI GCNGC 1 cut(s) 156
Sau96I GGNCC 1 cut(s) 635
SchI GAGTC 2 cut(s) 254, 262
ScrFI CCNGG 1 cut(s) 333
SduI GDGCHC 1 cut(s) 215
SfaNI GCATC 2 cut(s) 175, 244
SinI GGWCC 1 cut(s) 635
Sse9I AATT 2 cut(s) 70, 387
SsiI CCGC 2 cut(s) 156, 497
SspMI CTAG 3 cut(s) 216, 458, 614
StyD4I CCNGG 1 cut(s) 331
StyI CCWWGG 1 cut(s) 63
TaaI ACNGT 1 cut(s) 136
TaiI ACGT 1 cut(s) 433
TaqI TCGA 5 cut(s) 56, 114, 147, 414, 723
TasI AATT 2 cut(s) 70, 387
TauI GCSGC 1 cut(s) 158
TfiI GAWTC 3 cut(s) 198, 362, 683
Tru1I TTAA 3 cut(s) 74, 563, 675
Tru9I TTAA 3 cut(s) 74, 563, 675
TseFI GTSAC 1 cut(s) 554
Tsp45I GTSAC 1 cut(s) 554
TspDTI ATGAA 3 cut(s) 294, 552, 633
TspGWI ACGGA 1 cut(s) 138
VpaK11BI GGWCC 1 cut(s) 635
XapI RAATTY 1 cut(s) 70
XceI RCATGY 1 cut(s) 582
XspI CTAG 3 cut(s) 216, 458, 614
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.