Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0016053

Physical Location & Seq

Genomic Coordinates Reverse (-)

4424726 .. 4427457

Gene Structure 2732 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g05140.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGGCCGCCGCCACTAACACAACTCTCTCCGCCGCCGCACCGCCGCGGGCTCGCCTCCGCGGCGTGGTCTTCGACATGGACGGAACCCTAACGGTCCCCGTCATCGATTTCGCGGCAATGTACAGGGCCGTGCTCGGCGAGAAGGAGTACATCAGAATCAGGGCGGAGAATCCTTCCGGGATTGATATCCTTCATCACATTGAGGGCTGGAGCAATGATAGGCAGCAGAAGGCTTACGAGACCATCGCCGATTTCGAGCGCCGGGGACTCGATCGCCTCCAGATCATGCCTGGTGCTGCAGAACTTTGTGATTTTCTAGATTCTAAAAATATAAGGCGGGGATTAATCACACGCAATGTCAAGAGTGCGGTGGATTTGTTTCATGAACGGTTCAGGTTGTCATTTTCTCCAGCTCTGAGCAGGGAATTTCGACCTTACAAACCGGATCCAGCTCCATTATTGCATATATGTTCAGCCTGGGAAGTTAACCCTAGTGAAGTAATGATGGTTGGAGATTCCCTTAAAGATGACGTGAGTAACTATGTTTTTGTTTATTGTGAAAGTACGTTGTATTCTCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HAD_2 Hydrolase_like

Protein Analysis

194

Amino Acids

21.8

Weight (kDa)

5.83

Isoelectric Point (pI)

43.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase	PF00702	20 - 177	1.3e-17	haloacid dehalogenase-like hydrolase
HAD_2	PF13419	22 - 176	3.4e-12	Haloacid dehalogenase-like hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016053)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G33255
fragaria_vesca	FvH4_4g05140
malus_domestica	MD16G1230400.v1.1
prunus_persica	Prupe.1G052300_v2.0.a1
pyrus_communis	pycom16g19220
rosa_chinensis	RchiOBHm_Chr4g0396071
rosa_laevigata	RLG00000009575
rosa_multiflora	Rmu_sc0006325.1_g000009 Rmu_sc0015594.1_g000003
rosa_roxburghii	Rroxscaffold_5G00340870
rosa_rugosa	Rorug03G0352800
rosa_samantha	Rh4AG065000 Rh4AG065700 Rh4CG070400
rosa_wichuraiana	Rw4G005290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	46, 60, 113
AclWI	GGATC	2 cut(s)	440, 453
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	425
AfaI	GTAC	3 cut(s)	122, 149, 565
AfiI	CCNNNNNNNGG	1 cut(s)	64
AjiI	CACGTC	1 cut(s)	532
AjnI	CCWGG	2 cut(s)	289, 476
AluBI	AGCT	2 cut(s)	413, 452
AluI	AGCT	2 cut(s)	413, 452
Alw21I	GWGCWC	1 cut(s)	135
Alw26I	GTCTC	1 cut(s)	233
AlwI	GGATC	2 cut(s)	440, 453
AoxI	GGCC	2 cut(s)	3, 126
ApeKI	GCWGC	2 cut(s)	223, 296
ApoI	RAATTY	1 cut(s)	425
AseI	ATTAAT	1 cut(s)	344
AspLEI	GCGC	1 cut(s)	261
AspS9I	GGNCC	2 cut(s)	94, 126
AsuC2I	CCSGG	2 cut(s)	178, 263
AvaII	GGWCC	1 cut(s)	94
BamHI	GGATCC	1 cut(s)	445
BanII	GRGCYC	1 cut(s)	52
BbsI	GAAGAC	1 cut(s)	61
Bbv12I	GWGCWC	1 cut(s)	135
BbvI	GCAGC	2 cut(s)	235, 283
BccI	CCATC	2 cut(s)	251, 499
BceAI	ACGGC	1 cut(s)	113
BciT130I	CCWGG	2 cut(s)	291, 478
BcnI	CCSGG	2 cut(s)	178, 263
BcoDI	GTCTC	1 cut(s)	233
BfaI	CTAG	2 cut(s)	317, 492
BfmI	CTRYAG	1 cut(s)	297
BfoI	RGCGCY	1 cut(s)	262
BglI	GCCNNNNNGGC	1 cut(s)	60
BisI	GCNGC	9 cut(s)	6, 9, 33, 36, 44, 61, 114, 224, 297
BlsI	GCNGC	9 cut(s)	7, 10, 34, 37, 45, 62, 115, 225, 298
Bme1390I	CCNGG	4 cut(s)	178, 263, 291, 478
Bme18I	GGWCC	1 cut(s)	94
BmgBI	CACGTC	1 cut(s)	532
BmgT120I	GGNCC	2 cut(s)	94, 126
BmiI	GGNNCC	3 cut(s)	85, 96, 447
BmrFI	CCNGG	4 cut(s)	178, 263, 291, 478
BpiI	GAAGAC	1 cut(s)	61
BpmI	CTGGAG	3 cut(s)	229, 263, 393
BpuMI	CCSGG	2 cut(s)	178, 263
Bsa29I	ATCGAT	1 cut(s)	105
BsaBI	GATNNNNATC	1 cut(s)	185
BsaI	GGTCTC	1 cut(s)	233
BsaJI	CCNNGG	4 cut(s)	44, 58, 262, 477
BsaWI	WCCGGW	1 cut(s)	442
Bsc4I	CCNNNNNNNGG	1 cut(s)	64
Bse3DI	GCAATG	3 cut(s)	123, 220, 361
Bse8I	GATNNNNATC	1 cut(s)	185
BseBI	CCWGG	2 cut(s)	291, 478
BseCI	ATCGAT	1 cut(s)	105
BseDI	CCNNGG	4 cut(s)	44, 58, 262, 477
BseJI	GATNNNNATC	1 cut(s)	185
BseLI	CCNNNNNNNGG	1 cut(s)	64
BseMI	GCAATG	3 cut(s)	123, 220, 361
BseMII	CTCAG	1 cut(s)	407
BseXI	GCAGC	2 cut(s)	235, 283
Bsh1236I	CGCG	3 cut(s)	46, 60, 113
Bsh1285I	CGRYCG	1 cut(s)	274
BshFI	GGCC	2 cut(s)	5, 128
BshVI	ATCGAT	1 cut(s)	105
BsiEI	CGRYCG	1 cut(s)	274
BsiHKAI	GWGCWC	1 cut(s)	135
BsiSI	CCGG	3 cut(s)	177, 262, 443
BslFI	GGGAC	2 cut(s)	80, 279
BslI	CCNNNNNNNGG	1 cut(s)	64
BsmAI	GTCTC	1 cut(s)	233
BsmFI	GGGAC	2 cut(s)	80, 279
BsnI	GGCC	2 cut(s)	5, 128
Bso31I	GGTCTC	1 cut(s)	233
Bsp1286I	GDGCHC	2 cut(s)	52, 135
Bsp1407I	TGTACA	1 cut(s)	120
Bsp143I	GATC	3 cut(s)	271, 282, 445
BspANI	GGCC	2 cut(s)	5, 128
BspCNI	CTCAG	1 cut(s)	408
BspDI	ATCGAT	1 cut(s)	105
BspFNI	CGCG	3 cut(s)	46, 60, 113
BspHI	TCATGA	1 cut(s)	382
BspLI	GGNNCC	3 cut(s)	85, 96, 447
BspMAI	CTGCAG	1 cut(s)	301
BspPI	GGATC	2 cut(s)	440, 453
BspTNI	GGTCTC	1 cut(s)	233
BsrDI	GCAATG	3 cut(s)	123, 220, 361
BsrGI	TGTACA	1 cut(s)	120
BssECI	CCNNGG	4 cut(s)	44, 58, 262, 477
BssMI	GATC	3 cut(s)	271, 282, 445
Bst2UI	CCWGG	2 cut(s)	291, 478
Bst4CI	ACNGT	2 cut(s)	94, 390
BstAUI	TGTACA	1 cut(s)	120
BstC8I	GCNNGC	2 cut(s)	48, 52
BstDEI	CTNAG	1 cut(s)	416
BstDSI	CCRYGG	2 cut(s)	44, 58
BstFNI	CGCG	3 cut(s)	46, 60, 113
BstH2I	RGCGCY	1 cut(s)	262
BstHHI	GCGC	1 cut(s)	261
BstKTI	GATC	3 cut(s)	274, 285, 448
BstMAI	GTCTC	1 cut(s)	233
BstMBI	GATC	3 cut(s)	271, 282, 445
BstMCI	CGRYCG	1 cut(s)	274
BstMWI	GCNNNNNNNGC	1 cut(s)	60
BstNI	CCWGG	2 cut(s)	291, 478
BstSCI	CCNGG	4 cut(s)	176, 261, 289, 476
BstSFI	CTRYAG	1 cut(s)	297
BstUI	CGCG	3 cut(s)	46, 60, 113
BstV1I	GCAGC	2 cut(s)	235, 283
BstV2I	GAAGAC	1 cut(s)	61
BstX2I	RGATCY	1 cut(s)	445
BstYI	RGATCY	1 cut(s)	445
Bsu15I	ATCGAT	1 cut(s)	105
BsuRI	GGCC	2 cut(s)	5, 128
BsuTUI	ATCGAT	1 cut(s)	105
BtgI	CCRYGG	2 cut(s)	44, 58
BtgZI	GCGATG	1 cut(s)	229
BtrI	CACGTC	1 cut(s)	532
Cac8I	GCNNGC	2 cut(s)	48, 52
CciI	TCATGA	1 cut(s)	382
CfoI	GCGC	1 cut(s)	261
Cfr13I	GGNCC	2 cut(s)	94, 126
Cfr42I	CCGCGG	2 cut(s)	47, 61
ClaI	ATCGAT	1 cut(s)	105
Csp6I	GTAC	3 cut(s)	121, 148, 564
CviAII	CATG	3 cut(s)	76, 286, 383
CviJI	RGCY	8 cut(s)	5, 50, 128, 207, 233, 413, 452, 476
CviKI_1	RGCY	8 cut(s)	5, 50, 128, 207, 233, 413, 452, 476
CviQI	GTAC	3 cut(s)	121, 148, 564
DdeI	CTNAG	1 cut(s)	416
DpnI	GATC	3 cut(s)	273, 284, 447
DpnII	GATC	3 cut(s)	271, 282, 445
EaeI	YGGCCR	1 cut(s)	3
EciI	GGCGGA	2 cut(s)	19, 179
Eco24I	GRGCYC	1 cut(s)	52
Eco31I	GGTCTC	1 cut(s)	233
Eco32I	GATATC	1 cut(s)	187
Eco47I	GGWCC	1 cut(s)	94
EcoRII	CCWGG	2 cut(s)	289, 476
EcoRV	GATATC	1 cut(s)	187
EcoT38I	GRGCYC	1 cut(s)	52
FaeI	CATG	3 cut(s)	79, 289, 386
FaiI	YATR	8 cut(s)	77, 287, 332, 384, 465, 467, 469, 543
FaqI	GGGAC	2 cut(s)	80, 279
FatI	CATG	3 cut(s)	75, 285, 382
FauI	CCCGC	2 cut(s)	39, 330
Fnu4HI	GCNGC	9 cut(s)	6, 9, 33, 36, 44, 61, 114, 224, 297
FriOI	GRGCYC	1 cut(s)	52
Fsp4HI	GCNGC	9 cut(s)	6, 9, 33, 36, 44, 61, 114, 224, 297
FspBI	CTAG	2 cut(s)	317, 492
GlaI	GCGC	1 cut(s)	260
GluI	GCNGC	9 cut(s)	6, 9, 33, 36, 44, 61, 114, 224, 297
GsuI	CTGGAG	3 cut(s)	229, 263, 393
HaeII	RGCGCY	1 cut(s)	262
HaeIII	GGCC	2 cut(s)	5, 128
HapII	CCGG	3 cut(s)	177, 262, 443
HhaI	GCGC	1 cut(s)	261
Hin1II	CATG	3 cut(s)	79, 289, 386
Hin6I	GCGC	1 cut(s)	259
HinP1I	GCGC	1 cut(s)	259
HincII	GTYRAC	1 cut(s)	487
HindII	GTYRAC	1 cut(s)	487
HinfI	GANTC	5 cut(s)	156, 169, 267, 320, 515
HpaI	GTTAAC	1 cut(s)	487
HpaII	CCGG	3 cut(s)	177, 262, 443
Hpy166II	GTNNAC	1 cut(s)	487
Hpy188I	TCNGA	2 cut(s)	155, 417
Hpy188III	TCNNGA	4 cut(s)	280, 317, 361, 383
Hpy8I	GTNNAC	1 cut(s)	487
HpyAV	CCTTC	4 cut(s)	136, 183, 200, 223
HpyCH4III	ACNGT	2 cut(s)	94, 390
HpyCH4IV	ACGT	2 cut(s)	531, 566
HpyCH4V	TGCA	2 cut(s)	299, 463
HpyF10VI	GCNNNNNNNGC	1 cut(s)	60
HpyF3I	CTNAG	1 cut(s)	416
HpySE526I	ACGT	2 cut(s)	531, 566
Hsp92II	CATG	3 cut(s)	79, 289, 386
HspAI	GCGC	1 cut(s)	259
KspAI	GTTAAC	1 cut(s)	487
KspI	CCGCGG	2 cut(s)	47, 61
Kzo9I	GATC	3 cut(s)	271, 282, 445
LmnI	GCTCC	2 cut(s)	210, 457
Lsp1109I	GCAGC	2 cut(s)	235, 283
MaeI	CTAG	2 cut(s)	317, 492
MaeII	ACGT	2 cut(s)	531, 566
MaeIII	GTNAC	1 cut(s)	536
MalI	GATC	3 cut(s)	273, 284, 447
MboI	GATC	3 cut(s)	271, 282, 445
MboII	GAAGA	1 cut(s)	61
MflI	RGATCY	1 cut(s)	445
MhlI	GDGCHC	2 cut(s)	52, 135
MluCI	AATT	1 cut(s)	425
MlyI	GAGTC	1 cut(s)	261
MmeI	TCCRAC	1 cut(s)	490
MnlI	CCTC	3 cut(s)	65, 196, 287
MseI	TTAA	3 cut(s)	344, 486, 522
MspA1I	CMGCKG	2 cut(s)	46, 60
MspI	CCGG	3 cut(s)	177, 262, 443
MspR9I	CCNGG	4 cut(s)	178, 263, 291, 478
MvaI	CCWGG	2 cut(s)	291, 478
MvnI	CGCG	3 cut(s)	46, 60, 113
MwoI	GCNNNNNNNGC	1 cut(s)	60
NciI	CCSGG	2 cut(s)	178, 263
NdeII	GATC	3 cut(s)	271, 282, 445
NlaIII	CATG	3 cut(s)	79, 289, 386
NlaIV	GGNNCC	3 cut(s)	85, 96, 447
NmeAIII	GCCGAG	1 cut(s)	114
PagI	TCATGA	1 cut(s)	382
PcsI	WCGNNNNNNNCGW	1 cut(s)	252
PfeI	GAWTC	4 cut(s)	156, 169, 320, 515
PfoI	TCCNGGA	1 cut(s)	176
PkrI	GCNGC	9 cut(s)	7, 10, 34, 37, 45, 62, 115, 225, 298
Ple19I	CGATCG	1 cut(s)	274
PleI	GAGTC	1 cut(s)	261
PpsI	GAGTC	1 cut(s)	261
PshBI	ATTAAT	1 cut(s)	344
Psp6I	CCWGG	2 cut(s)	289, 476
PspGI	CCWGG	2 cut(s)	289, 476
PspN4I	GGNNCC	3 cut(s)	85, 96, 447
PspPI	GGNCC	2 cut(s)	94, 126
PstI	CTGCAG	1 cut(s)	301
PsuI	RGATCY	1 cut(s)	445
PvuI	CGATCG	1 cut(s)	274
RsaI	GTAC	3 cut(s)	122, 149, 565
RsaNI	GTAC	3 cut(s)	121, 148, 564
SacII	CCGCGG	2 cut(s)	47, 61
SaqAI	TTAA	3 cut(s)	344, 486, 522
SatI	GCNGC	9 cut(s)	6, 9, 33, 36, 44, 61, 114, 224, 297
Sau3AI	GATC	3 cut(s)	271, 282, 445
Sau96I	GGNCC	2 cut(s)	94, 126
SchI	GAGTC	1 cut(s)	261
ScrFI	CCNGG	4 cut(s)	178, 263, 291, 478
SduI	GDGCHC	2 cut(s)	52, 135
SetI	ASST	6 cut(s)	398, 415, 436, 454, 534, 569
SfcI	CTRYAG	1 cut(s)	297
Sfr303I	CCGCGG	2 cut(s)	47, 61
SgrBI	CCGCGG	2 cut(s)	47, 61
SinI	GGWCC	1 cut(s)	94
Sse9I	AATT	1 cut(s)	425
SspMI	CTAG	2 cut(s)	317, 492
StyD4I	CCNGG	4 cut(s)	176, 261, 289, 476
TaaI	ACNGT	2 cut(s)	94, 390
TaiI	ACGT	2 cut(s)	534, 569
TaqI	TCGA	5 cut(s)	72, 105, 255, 270, 430
TasI	AATT	1 cut(s)	425
TatI	WGTACW	2 cut(s)	120, 147
TauI	GCSGC	7 cut(s)	8, 11, 35, 38, 46, 63, 116
TfiI	GAWTC	4 cut(s)	156, 169, 320, 515
Tru1I	TTAA	3 cut(s)	344, 486, 522
Tru9I	TTAA	3 cut(s)	344, 486, 522
TseI	GCWGC	2 cut(s)	223, 296
TspDTI	ATGAA	3 cut(s)	182, 371, 399
TspGWI	ACGGA	1 cut(s)	96
VpaK11BI	GGWCC	1 cut(s)	94
VspI	ATTAAT	1 cut(s)	344
XapI	RAATTY	1 cut(s)	425
XbaI	TCTAGA	1 cut(s)	316
XcmI	CCANNNNNNNNNTGG	1 cut(s)	287
XspI	CTAG	2 cut(s)	317, 492

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.