Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010384

Physical Location & Seq

Genomic Coordinates Reverse (-)

14526619 .. 14529601

Gene Structure 2983 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G34450.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGACGAAGAGAGCTCCCAAGTCAGGGCCTTTGTCTCCGTCGTGCAGCGGAGGCTCTAGTCGGAACTTAGAGTTGGCTGTGAAGTCAAGTGAAGGTGCAAGGAGGTCTACAAGACTGAGACTTCAGCCTTTGAGAAAGCCAAAGACAAGCCCCAAGAAGAAACCCGTTAAACTCCAAACGAAGATGCCCAAGAAACCTGCCACTGCTTTCTTCTTTTTCCTGGATGATTTCCGGAAGCAATATCAAGAGGAGAATCCAGATGTCAAGTCCATGCGCGAGATTGGGAAGACATGTGGAGAGAAATGGAAAACAATGACTTACGAGGAAAAGGTAAAGTATTATGATATAGCTACTGAGAAGAGGGAAGAATTTCACCGAGCAATGACAGAATATACCAAGAGAATGGAATCAGGTGCCCACGATGAATCAGAGACCGACTCAGACTATTCTGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMG_box

Protein Analysis

151

Amino Acids

17.5

Weight (kDa)

9.58

Isoelectric Point (pI)

68.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMG_box_2	PF09011	61 - 131	9.8e-16	HMG-box domain
HMG_box	PF00505	63 - 131	8.4e-19	HMG (high mobility group) box
HMG_WDHD1	PF24815	66 - 113	7.9e-12	WDHD1 HMG box

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010384)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34450 AT2G34450 AT2G34450 AT2G34450
fragaria_vesca	FvH4_3g05880
malus_domestica	MD05G1286800.v1.1 MD10G1264300.v1.1
prunus_persica	Prupe.4G078100_v2.0.a1 Prupe.4G078100_v2.0.a1
pyrus_communis	pycom05g26520
rosa_chinensis	RchiOBHm_Chr5g0013561
rosa_laevigata	RLG00000032028
rosa_multiflora	Rmu_sc0002573.1_g000020 Rmu_sc0003458.1_g000025
rosa_roxburghii	Rroxscaffold_1G00063010
rosa_rugosa	Rorug05G0011000
rosa_samantha	Rh5AG105600 Rh5BG101900 Rh5CG113700 Rh5DG100400
rosa_wichuraiana	Rw5G009200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	205
AccB1I	GGYRCC	1 cut(s)	413
AccI	GTMKAC	1 cut(s)	107
AccII	CGCG	1 cut(s)	276
AccIII	TCCGGA	1 cut(s)	231
AciI	CCGC	1 cut(s)	48
AcsI	RAATTY	1 cut(s)	368
AcuI	CTGAAG	1 cut(s)	107
AfiI	CCNNNNNNNGG	2 cut(s)	23, 24
AflIII	ACRYGT	1 cut(s)	290
AjnI	CCWGG	1 cut(s)	219
AjuI	GAANNNNNNNTTGG	2 cut(s)	56, 88
AluBI	AGCT	2 cut(s)	14, 350
AluI	AGCT	2 cut(s)	14, 350
Alw21I	GWGCWC	1 cut(s)	16
Alw26I	GTCTC	3 cut(s)	39, 112, 425
Aor13HI	TCCGGA	1 cut(s)	231
AoxI	GGCC	1 cut(s)	26
ApeKI	GCWGC	1 cut(s)	45
ApoI	RAATTY	1 cut(s)	368
Asp700I	GAANNNNTTC	1 cut(s)	369
AspLEI	GCGC	1 cut(s)	276
AspS9I	GGNCC	1 cut(s)	26
AsuHPI	GGTGA	1 cut(s)	365
BaeGI	GKGCMC	1 cut(s)	418
BanI	GGYRCC	1 cut(s)	413
BanII	GRGCYC	1 cut(s)	16
BbsI	GAAGAC	1 cut(s)	293
Bbv12I	GWGCWC	1 cut(s)	16
BbvI	GCAGC	1 cut(s)	57
BciT130I	CCWGG	1 cut(s)	221
BcoDI	GTCTC	3 cut(s)	39, 112, 425
BfaI	CTAG	1 cut(s)	57
BfuAI	ACCTGC	1 cut(s)	205
BisI	GCNGC	1 cut(s)	46
BlsI	GCNGC	1 cut(s)	47
Bme1390I	CCNGG	1 cut(s)	221
BmgT120I	GGNCC	1 cut(s)	26
BmiI	GGNNCC	1 cut(s)	415
BmrFI	CCNGG	1 cut(s)	221
BmsI	GCATC	1 cut(s)	174
BpiI	GAAGAC	1 cut(s)	293
BplI	GAGNNNNNCTC	2 cut(s)	422, 454
BsaI	GGTCTC	1 cut(s)	425
BsaWI	WCCGGW	1 cut(s)	231
Bsc4I	CCNNNNNNNGG	2 cut(s)	23, 24
Bse3DI	GCAATG	1 cut(s)	387
BseAI	TCCGGA	1 cut(s)	231
BseBI	CCWGG	1 cut(s)	221
BseGI	GGATG	1 cut(s)	229
BseLI	CCNNNNNNNGG	2 cut(s)	23, 24
BseMI	GCAATG	1 cut(s)	387
BseMII	CTCAG	3 cut(s)	107, 345, 453
BseRI	GAGGAG	1 cut(s)	263
BseSI	GKGCMC	1 cut(s)	418
BseXI	GCAGC	1 cut(s)	57
BsgI	GTGCAG	1 cut(s)	64
Bsh1236I	CGCG	1 cut(s)	276
BshFI	GGCC	1 cut(s)	28
BshNI	GGYRCC	1 cut(s)	413
BsiHKAI	GWGCWC	1 cut(s)	16
BsiSI	CCGG	1 cut(s)	232
BslI	CCNNNNNNNGG	2 cut(s)	23, 24
BsmAI	GTCTC	3 cut(s)	39, 112, 425
BsnI	GGCC	1 cut(s)	28
Bso31I	GGTCTC	1 cut(s)	425
Bsp1286I	GDGCHC	2 cut(s)	16, 418
Bsp13I	TCCGGA	1 cut(s)	231
BspACI	CCGC	1 cut(s)	48
BspANI	GGCC	1 cut(s)	28
BspCNI	CTCAG	3 cut(s)	108, 346, 452
BspEI	TCCGGA	1 cut(s)	231
BspFNI	CGCG	1 cut(s)	276
BspLI	GGNNCC	1 cut(s)	415
BspMI	ACCTGC	1 cut(s)	205
BspT107I	GGYRCC	1 cut(s)	413
BspTNI	GGTCTC	1 cut(s)	425
BsrDI	GCAATG	1 cut(s)	387
Bst2UI	CCWGG	1 cut(s)	221
Bst6I	CTCTTC	2 cut(s)	2, 353
BstDEI	CTNAG	4 cut(s)	67, 116, 354, 439
BstF5I	GGATG	1 cut(s)	229
BstFNI	CGCG	1 cut(s)	276
BstHHI	GCGC	1 cut(s)	276
BstMAI	GTCTC	3 cut(s)	39, 112, 425
BstMWI	GCNNNNNNNGC	1 cut(s)	51
BstNI	CCWGG	1 cut(s)	221
BstNSI	RCATGY	1 cut(s)	294
BstSCI	CCNGG	1 cut(s)	219
BstSLI	GKGCMC	1 cut(s)	418
BstUI	CGCG	1 cut(s)	276
BstV1I	GCAGC	1 cut(s)	57
BstV2I	GAAGAC	1 cut(s)	293
BstXI	CCANNNNNNTGG	1 cut(s)	403
BsuRI	GGCC	1 cut(s)	28
BtsCI	GGATG	1 cut(s)	229
BtsI	GCAGTG	1 cut(s)	201
BtsIMutI	CAGTG	1 cut(s)	201
BveI	ACCTGC	1 cut(s)	205
CfoI	GCGC	1 cut(s)	276
Cfr13I	GGNCC	1 cut(s)	26
CviAII	CATG	2 cut(s)	271, 291
CviJI	RGCY	8 cut(s)	14, 28, 54, 77, 127, 139, 150, 350
CviKI_1	RGCY	8 cut(s)	14, 28, 54, 77, 127, 139, 150, 350
DdeI	CTNAG	4 cut(s)	67, 116, 354, 439
Eam1104I	CTCTTC	2 cut(s)	2, 353
EarI	CTCTTC	2 cut(s)	2, 353
Ecl136II	GAGCTC	1 cut(s)	14
Eco24I	GRGCYC	1 cut(s)	16
Eco31I	GGTCTC	1 cut(s)	425
Eco53kI	GAGCTC	1 cut(s)	14
Eco57I	CTGAAG	1 cut(s)	107
EcoICRI	GAGCTC	1 cut(s)	14
EcoO109I	RGGNCCY	1 cut(s)	26
EcoRII	CCWGG	1 cut(s)	219
EcoT38I	GRGCYC	1 cut(s)	16
FaeI	CATG	2 cut(s)	274, 294
FaiI	YATR	5 cut(s)	272, 292, 342, 347, 393
FatI	CATG	2 cut(s)	270, 290
FblI	GTMKAC	1 cut(s)	107
Fnu4HI	GCNGC	1 cut(s)	46
FokI	GGATG	1 cut(s)	236
FriOI	GRGCYC	1 cut(s)	16
Fsp4HI	GCNGC	1 cut(s)	46
FspBI	CTAG	1 cut(s)	57
GlaI	GCGC	1 cut(s)	275
GluI	GCNGC	1 cut(s)	46
HaeIII	GGCC	1 cut(s)	28
HapII	CCGG	1 cut(s)	232
HhaI	GCGC	1 cut(s)	276
Hin1II	CATG	2 cut(s)	274, 294
Hin6I	GCGC	1 cut(s)	274
HinP1I	GCGC	1 cut(s)	274
HinfI	GANTC	4 cut(s)	253, 407, 425, 437
HpaII	CCGG	1 cut(s)	232
HphI	GGTGA	1 cut(s)	365
Hpy166II	GTNNAC	1 cut(s)	108
Hpy188I	TCNGA	4 cut(s)	63, 430, 442, 451
Hpy188III	TCNNGA	3 cut(s)	232, 245, 257
Hpy8I	GTNNAC	1 cut(s)	108
Hpy99I	CGWCG	1 cut(s)	43
HpyAV	CCTTC	1 cut(s)	86
HpyCH4V	TGCA	2 cut(s)	45, 98
HpyF10VI	GCNNNNNNNGC	1 cut(s)	51
HpyF3I	CTNAG	4 cut(s)	67, 116, 354, 439
Hsp92II	CATG	2 cut(s)	274, 294
HspAI	GCGC	1 cut(s)	274
Kpn2I	TCCGGA	1 cut(s)	231
LmnI	GCTCC	1 cut(s)	19
LpnPI	CCDG	7 cut(s)	9, 206, 210, 233, 245, 270, 396
Lsp1109I	GCAGC	1 cut(s)	57
LweI	GCATC	1 cut(s)	174
MaeI	CTAG	1 cut(s)	57
MboII	GAAGA	7 cut(s)	19, 169, 193, 202, 298, 370, 377
MhlI	GDGCHC	2 cut(s)	16, 418
MluCI	AATT	1 cut(s)	368
MlyI	GAGTC	1 cut(s)	431
MmeI	TCCRAC	1 cut(s)	41
MnlI	CCTC	5 cut(s)	44, 96, 241, 316, 354
MroI	TCCGGA	1 cut(s)	231
MroXI	GAANNNNTTC	1 cut(s)	369
MseI	TTAA	1 cut(s)	168
MspA1I	CMGCKG	1 cut(s)	48
MspI	CCGG	1 cut(s)	232
MspR9I	CCNGG	1 cut(s)	221
MvaI	CCWGG	1 cut(s)	221
MvnI	CGCG	1 cut(s)	276
MwoI	GCNNNNNNNGC	1 cut(s)	51
NlaIII	CATG	2 cut(s)	274, 294
NlaIV	GGNNCC	1 cut(s)	415
NspI	RCATGY	1 cut(s)	294
PciI	ACATGT	1 cut(s)	290
PdmI	GAANNNNTTC	1 cut(s)	369
PfeI	GAWTC	3 cut(s)	253, 407, 425
PfoI	TCCNGGA	1 cut(s)	219
PkrI	GCNGC	1 cut(s)	47
PleI	GAGTC	1 cut(s)	431
PpsI	GAGTC	1 cut(s)	431
PscI	ACATGT	1 cut(s)	290
Psp124BI	GAGCTC	1 cut(s)	16
Psp6I	CCWGG	1 cut(s)	219
PspGI	CCWGG	1 cut(s)	219
PspN4I	GGNNCC	1 cut(s)	415
PspPI	GGNCC	1 cut(s)	26
SacI	GAGCTC	1 cut(s)	16
SaqAI	TTAA	1 cut(s)	168
SatI	GCNGC	1 cut(s)	46
Sau96I	GGNCC	1 cut(s)	26
SchI	GAGTC	1 cut(s)	431
ScrFI	CCNGG	1 cut(s)	221
SduI	GDGCHC	2 cut(s)	16, 418
SetI	ASST	7 cut(s)	16, 97, 107, 199, 333, 352, 415
SfaNI	GCATC	1 cut(s)	174
Sse9I	AATT	1 cut(s)	368
SsiI	CCGC	1 cut(s)	48
SspMI	CTAG	1 cut(s)	57
SstI	GAGCTC	1 cut(s)	16
StyD4I	CCNGG	1 cut(s)	219
TaqII	GACCGA	1 cut(s)	449
TasI	AATT	1 cut(s)	368
TfiI	GAWTC	3 cut(s)	253, 407, 425
Tru1I	TTAA	1 cut(s)	168
Tru9I	TTAA	1 cut(s)	168
TscAI	CASTG	1 cut(s)	208
TseI	GCWGC	1 cut(s)	45
TspDTI	ATGAA	1 cut(s)	438
TspGWI	ACGGA	1 cut(s)	27
TspRI	CASTG	1 cut(s)	208
XapI	RAATTY	1 cut(s)	368
XceI	RCATGY	1 cut(s)	294
XmiI	GTMKAC	1 cut(s)	107
XmnI	GAANNNNTTC	1 cut(s)	369
XspI	CTAG	1 cut(s)	57

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.