Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0010384

Physical Location & Seq

Genomic Coordinates Forward (+)

27761768 .. 27764856

Gene Structure 3089 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g26520.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGCATGCCGATGACGGTGGAAATTGGGCCCAGCCTAGTTACCTTGGGCCTGATTTAACCACACAGCCCAACTTCCTGAGTGCTCGCCACGGTCTAATCATCAGTCGTCACTGTGCCTGCCCACTTCCCACACCAACCCACTCACCCGACCCGATTCCACGACCGACGCCAAAAGGCCCGAAGCGAAGAAACATGGCAAAGAAAACTAGCAACTCCCAGCAGTCTCCCTCGTCTTCTTCCTCCGCCACAAAAGCTTCAACTGGGGAAATGGTGTTGAAGGTCCAACAAAGGGAGGGGACAAGGAGGTCAACAAGGTTAAGCAGCGTAAATGTGGAGGGAAAGAGAATCGTTTCACTAAAGAAGTCCAAAACCAAGCAGAAGAAGAAAAGTGCAAAAGTTGATTCCAAGATACCCAAGAAACCGCCAACTGCTTTCTTCTATTTCCTGGAGGATTATCGTAAGGAACTTCAAGAGCAAAATCCAGGTATCAAGCAAATGCGCGAAATTGGAAAGGTGTGTGGAGAGAAGTGGAAAACAATGACATATGAGGAAAAGGTTCAGTATTATGATATAGCCACGGAGAAACGAGCTGAGTTTGAGAAGGCCATGGCAGAATATGCACAAAGAAAGGAAAGTGGCGAGGATGAAGAAACCGAGGATGAGGAAGAGGAAGATTGGTCTGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMG_box

Protein Analysis

229

Amino Acids

25.88

Weight (kDa)

9.24

Isoelectric Point (pI)

59.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010384)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34450 AT2G34450 AT2G34450 AT2G34450
fragaria_vesca	FvH4_3g05880
malus_domestica	MD05G1286800.v1.1 MD10G1264300.v1.1
prunus_persica	Prupe.4G078100_v2.0.a1 Prupe.4G078100_v2.0.a1
pyrus_communis	pycom05g26520
rosa_chinensis	RchiOBHm_Chr5g0013561
rosa_laevigata	RLG00000032028
rosa_multiflora	Rmu_sc0002573.1_g000020 Rmu_sc0003458.1_g000025
rosa_roxburghii	Rroxscaffold_1G00063010
rosa_rugosa	Rorug05G0011000
rosa_samantha	Rh5AG105600 Rh5BG101900 Rh5CG113700 Rh5DG100400
rosa_wichuraiana	Rw5G009200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	304
AccII	CGCG	1 cut(s)	501
AciI	CCGC	2 cut(s)	243, 422
AcyI	GRCGYC	1 cut(s)	167
AfiI	CCNNNNNNNGG	1 cut(s)	289
AgsI	TTSAA	3 cut(s)	258, 277, 470
AjnI	CCWGG	2 cut(s)	444, 481
AluBI	AGCT	2 cut(s)	254, 590
AluI	AGCT	2 cut(s)	254, 590
Alw21I	GWGCWC	1 cut(s)	85
Alw26I	GTCTC	1 cut(s)	228
AoxI	GGCC	4 cut(s)	27, 47, 175, 603
ApaI	GGGCCC	1 cut(s)	31
ApeKI	GCWGC	1 cut(s)	321
Asp700I	GAANNNNTTC	2 cut(s)	349, 555
AspLEI	GCGC	1 cut(s)	501
AspS9I	GGNCC	5 cut(s)	27, 28, 47, 176, 280
AsuHPI	GGTGA	1 cut(s)	135
AvaII	GGWCC	1 cut(s)	280
BaeGI	GKGCMC	1 cut(s)	31
BanII	GRGCYC	1 cut(s)	31
BbsI	GAAGAC	1 cut(s)	225
Bbv12I	GWGCWC	1 cut(s)	85
BbvI	GCAGC	1 cut(s)	333
BciT130I	CCWGG	2 cut(s)	446, 483
BcoDI	GTCTC	1 cut(s)	228
BfaI	CTAG	2 cut(s)	36, 207
BisI	GCNGC	1 cut(s)	322
BlsI	GCNGC	1 cut(s)	323
Bme1390I	CCNGG	2 cut(s)	446, 483
Bme18I	GGWCC	1 cut(s)	280
BmgT120I	GGNCC	5 cut(s)	27, 28, 47, 176, 280
BmiI	GGNNCC	1 cut(s)	29
BmrFI	CCNGG	2 cut(s)	446, 483
BmrI	ACTGGG	1 cut(s)	270
BmuI	ACTGGG	1 cut(s)	270
BpiI	GAAGAC	1 cut(s)	225
BpmI	CTGGAG	1 cut(s)	467
BsaHI	GRCGYC	1 cut(s)	167
BsaJI	CCNNGG	5 cut(s)	43, 88, 576, 606, 654
Bsc4I	CCNNNNNNNGG	1 cut(s)	289
Bse1I	ACTGG	1 cut(s)	265
BseBI	CCWGG	2 cut(s)	446, 483
BseDI	CCNNGG	5 cut(s)	43, 88, 576, 606, 654
BseGI	GGATG	2 cut(s)	649, 664
BseLI	CCNNNNNNNGG	1 cut(s)	289
BseMII	CTCAG	2 cut(s)	68, 582
BseNI	ACTGG	1 cut(s)	265
BseSI	GKGCMC	1 cut(s)	31
BseXI	GCAGC	1 cut(s)	333
BseYI	CCCAGC	2 cut(s)	30, 216
Bsh1236I	CGCG	1 cut(s)	501
Bsh1285I	CGRYCG	1 cut(s)	164
BshFI	GGCC	4 cut(s)	29, 49, 177, 605
BsiEI	CGRYCG	1 cut(s)	164
BsiHKAI	GWGCWC	1 cut(s)	85
BslFI	GGGAC	1 cut(s)	310
BslI	CCNNNNNNNGG	1 cut(s)	289
BsmAI	GTCTC	1 cut(s)	228
BsmFI	GGGAC	1 cut(s)	310
BsnI	GGCC	4 cut(s)	29, 49, 177, 605
Bsp120I	GGGCCC	1 cut(s)	27
Bsp1286I	GDGCHC	2 cut(s)	31, 85
Bsp19I	CCATGG	1 cut(s)	606
BspACI	CCGC	2 cut(s)	243, 422
BspANI	GGCC	4 cut(s)	29, 49, 177, 605
BspCNI	CTCAG	2 cut(s)	69, 583
BspFNI	CGCG	1 cut(s)	501
BspLI	GGNNCC	1 cut(s)	29
BsrI	ACTGG	1 cut(s)	265
BssECI	CCNNGG	5 cut(s)	43, 88, 576, 606, 654
BssNI	GRCGYC	1 cut(s)	167
BssT1I	CCWWGG	2 cut(s)	43, 606
Bst2UI	CCWGG	2 cut(s)	446, 483
Bst4CI	ACNGT	3 cut(s)	17, 92, 113
Bst6I	CTCTTC	1 cut(s)	660
BstACI	GRCGYC	1 cut(s)	167
BstAPI	GCANNNNNTGC	1 cut(s)	617
BstC8I	GCNNGC	3 cut(s)	6, 85, 118
BstDEI	CTNAG	2 cut(s)	77, 591
BstDSI	CCRYGG	3 cut(s)	88, 576, 606
BstF5I	GGATG	2 cut(s)	649, 664
BstFNI	CGCG	1 cut(s)	501
BstHHI	GCGC	1 cut(s)	501
BstMAI	GTCTC	1 cut(s)	228
BstMCI	CGRYCG	1 cut(s)	164
BstMWI	GCNNNNNNNGC	2 cut(s)	251, 617
BstNI	CCWGG	2 cut(s)	446, 483
BstNSI	RCATGY	1 cut(s)	8
BstSCI	CCNGG	2 cut(s)	444, 481
BstSLI	GKGCMC	1 cut(s)	31
BstUI	CGCG	1 cut(s)	501
BstV1I	GCAGC	1 cut(s)	333
BstV2I	GAAGAC	1 cut(s)	225
BsuRI	GGCC	4 cut(s)	29, 49, 177, 605
BtgI	CCRYGG	3 cut(s)	88, 576, 606
BtsCI	GGATG	2 cut(s)	649, 664
BtsIMutI	CAGTG	1 cut(s)	109
Cac8I	GCNNGC	3 cut(s)	6, 85, 118
CfoI	GCGC	1 cut(s)	501
Cfr13I	GGNCC	5 cut(s)	27, 28, 47, 176, 280
CseI	GACGC	1 cut(s)	175
CviAII	CATG	3 cut(s)	5, 193, 607
CviJI	RGCY	9 cut(s)	29, 34, 49, 67, 177, 254, 575, 590, 605
CviKI_1	RGCY	9 cut(s)	29, 34, 49, 67, 177, 254, 575, 590, 605
DdeI	CTNAG	2 cut(s)	77, 591
DrdI	GACNNNNNNGTC	1 cut(s)	304
DseDI	GACNNNNNNGTC	1 cut(s)	304
Eam1104I	CTCTTC	1 cut(s)	660
EarI	CTCTTC	1 cut(s)	660
EciI	GGCGGA	1 cut(s)	232
Eco130I	CCWWGG	2 cut(s)	43, 606
Eco24I	GRGCYC	1 cut(s)	31
Eco47I	GGWCC	1 cut(s)	280
EcoRII	CCWGG	2 cut(s)	444, 481
EcoT14I	CCWWGG	2 cut(s)	43, 606
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	31
ErhI	CCWWGG	2 cut(s)	43, 606
FaeI	CATG	3 cut(s)	8, 196, 610
FaiI	YATR	8 cut(s)	6, 194, 544, 546, 567, 572, 608, 618
FaqI	GGGAC	1 cut(s)	310
FatI	CATG	3 cut(s)	4, 192, 606
FauNDI	CATATG	1 cut(s)	544
Fnu4HI	GCNGC	1 cut(s)	322
FokI	GGATG	2 cut(s)	656, 671
FriOI	GRGCYC	1 cut(s)	31
Fsp4HI	GCNGC	1 cut(s)	322
FspBI	CTAG	2 cut(s)	36, 207
GlaI	GCGC	1 cut(s)	500
GluI	GCNGC	1 cut(s)	322
GsaI	CCCAGC	2 cut(s)	34, 220
GsuI	CTGGAG	1 cut(s)	467
HaeIII	GGCC	4 cut(s)	29, 49, 177, 605
HgaI	GACGC	1 cut(s)	175
HhaI	GCGC	1 cut(s)	501
Hin1I	GRCGYC	1 cut(s)	167
Hin1II	CATG	3 cut(s)	8, 196, 610
Hin6I	GCGC	1 cut(s)	499
HinP1I	GCGC	1 cut(s)	499
HincII	GTYRAC	1 cut(s)	309
HindII	GTYRAC	1 cut(s)	309
HindIII	AAGCTT	1 cut(s)	252
HinfI	GANTC	3 cut(s)	154, 345, 401
HphI	GGTGA	1 cut(s)	135
Hpy166II	GTNNAC	1 cut(s)	309
Hpy188III	TCNNGA	2 cut(s)	76, 470
Hpy8I	GTNNAC	1 cut(s)	309
Hpy99I	CGWCG	1 cut(s)	169
HpyAV	CCTTC	2 cut(s)	271, 595
HpyCH4III	ACNGT	3 cut(s)	17, 92, 113
HpyCH4V	TGCA	3 cut(s)	4, 392, 620
HpyF10VI	GCNNNNNNNGC	2 cut(s)	251, 617
HpyF3I	CTNAG	2 cut(s)	77, 591
Hsp92I	GRCGYC	1 cut(s)	167
Hsp92II	CATG	3 cut(s)	8, 196, 610
HspAI	GCGC	1 cut(s)	499
Lsp1109I	GCAGC	1 cut(s)	333
MaeI	CTAG	2 cut(s)	36, 207
MaeIII	GTNAC	2 cut(s)	38, 107
MboII	GAAGA	9 cut(s)	198, 225, 228, 391, 394, 427, 659, 677, 683
MhlI	GDGCHC	2 cut(s)	31, 85
MluCI	AATT	2 cut(s)	22, 504
MmeI	TCCRAC	1 cut(s)	307
Mph1103I	ATGCAT	1 cut(s)	6
MroXI	GAANNNNTTC	2 cut(s)	349, 555
MseI	TTAA	2 cut(s)	56, 317
MslI	CAYNNNNRTG	1 cut(s)	9
MspR9I	CCNGG	2 cut(s)	446, 483
MvaI	CCWGG	2 cut(s)	446, 483
MvnI	CGCG	1 cut(s)	501
MwoI	GCNNNNNNNGC	2 cut(s)	251, 617
NcoI	CCATGG	1 cut(s)	606
NdeI	CATATG	1 cut(s)	544
NlaIII	CATG	3 cut(s)	8, 196, 610
NlaIV	GGNNCC	1 cut(s)	29
NmuCI	GTSAC	1 cut(s)	107
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	8
PaeI	GCATGC	1 cut(s)	8
PdmI	GAANNNNTTC	2 cut(s)	349, 555
PfeI	GAWTC	3 cut(s)	154, 345, 401
PfoI	TCCNGGA	1 cut(s)	444
PkrI	GCNGC	1 cut(s)	323
Psp6I	CCWGG	2 cut(s)	444, 481
PspFI	CCCAGC	2 cut(s)	30, 216
PspGI	CCWGG	2 cut(s)	444, 481
PspN4I	GGNNCC	1 cut(s)	29
PspOMI	GGGCCC	1 cut(s)	27
PspPI	GGNCC	5 cut(s)	27, 28, 47, 176, 280
RseI	CAYNNNNRTG	1 cut(s)	9
SaqAI	TTAA	2 cut(s)	56, 317
SatI	GCNGC	1 cut(s)	322
Sau96I	GGNCC	5 cut(s)	27, 28, 47, 176, 280
ScrFI	CCNGG	2 cut(s)	446, 483
SduI	GDGCHC	2 cut(s)	31, 85
SetI	ASST	9 cut(s)	45, 256, 282, 308, 317, 487, 516, 558, 592
SinI	GGWCC	1 cut(s)	280
SmiMI	CAYNNNNRTG	1 cut(s)	9
SphI	GCATGC	1 cut(s)	8
Sse9I	AATT	2 cut(s)	22, 504
SsiI	CCGC	2 cut(s)	243, 422
SspMI	CTAG	2 cut(s)	36, 207
StyD4I	CCNGG	2 cut(s)	444, 481
StyI	CCWWGG	2 cut(s)	43, 606
TaaI	ACNGT	3 cut(s)	17, 92, 113
TaqII	GACCGA	1 cut(s)	178
TasI	AATT	2 cut(s)	22, 504
TfiI	GAWTC	3 cut(s)	154, 345, 401
Tru1I	TTAA	2 cut(s)	56, 317
Tru9I	TTAA	2 cut(s)	56, 317
TscAI	CASTG	1 cut(s)	116
TseFI	GTSAC	1 cut(s)	107
TseI	GCWGC	1 cut(s)	321
Tsp45I	GTSAC	1 cut(s)	107
TspDTI	ATGAA	1 cut(s)	660
TspGWI	ACGGA	1 cut(s)	593
TspRI	CASTG	1 cut(s)	116
VpaK11BI	GGWCC	1 cut(s)	280
XceI	RCATGY	1 cut(s)	8
XmnI	GAANNNNTTC	2 cut(s)	349, 555
XspI	CTAG	2 cut(s)	36, 207
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.