Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0010384

Physical Location & Seq

Genomic Coordinates Reverse (-)

688923 .. 690041

Gene Structure 1119 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0011000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGTCTGTAGATTTTAATCGCAAAAATACTAAAGGAATAATTGTTTGCTGCTCCGAGAAAACAGGTGAGAGAGGTCTAGGGTTGGAAAGACAGAGGCTGGCGTTGAGGCCTGTCCGGCGGCGCTCCCGCGTTGATGGCGGCTTCCTGCCCCGTCGACGAGTGGTGGGTGTTGCCGGACGGGTTCCTGGGGCTCTAGGATTCTTCTTTTTCTCTGGGTTTAGGTGCTCTTGGCTGTGTAGGCTTTTTCATCTTTCTCAAGCAGCGGCGCAGACGTTGGTGAAGGGTGCTCGGCTATCGGCGACGGGAAGGTGTTTAGTGACCAGATCGTGGCGGCGGCAGGCCATGGATCGTATGGCACTGGTCTTTTCTCTGAGGCGTGTGGCTGGGTGGAGGATAGAGTGTTTGAAAGGGATTCTCGAATTGATGGGAGGCCGGATTGGTTTCAGATCAATTTGGGATGGATTTGCACAATGGTCGGTAATGAGTTTCAACCAAGGAGGATGGTGGTGGCCTGAGATCCCAAGCTGGTCGTGGCAGAGTACTTGGCTTGGGTGTCTTCGGTGGGGTGTGCTCACTTGGCTGCACTCATGGTGGTTTGCCGTCGGTCTGTTGTCAATGGTGAGGAAGATGGAAGTGGTTCAACATAGCCTGAAAGGTGGATTTCCCTTGCACGTGGTCTGGCGGTATATGGACACGGTGTGGAAGAGGGTGGAGTGGTTCGTTTGGATGTTGGTGACGAGGTCGTATCGGGACACTCGGGATTGGTTATCGTTCTGTGTAGCCTGGGGTGATAGGTGTAAAAATTGGTTAGGGGTTGGACCTTTTCGGTTCATGGAAGTTACTATTAGTGACGGACCCATAACTAGGGATCTTGGTAGGAATATGTGTCGTGGTGTTGATACCACAACCGGTTATTCCAATGCTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMG_box

Protein Analysis

309

Amino Acids

35.85

Weight (kDa)

11.16

Isoelectric Point (pI)

43.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010384)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34450 AT2G34450 AT2G34450 AT2G34450
fragaria_vesca	FvH4_3g05880
malus_domestica	MD05G1286800.v1.1 MD10G1264300.v1.1
prunus_persica	Prupe.4G078100_v2.0.a1 Prupe.4G078100_v2.0.a1
pyrus_communis	pycom05g26520
rosa_chinensis	RchiOBHm_Chr5g0013561
rosa_laevigata	RLG00000032028
rosa_multiflora	Rmu_sc0002573.1_g000020 Rmu_sc0003458.1_g000025
rosa_roxburghii	Rroxscaffold_1G00063010
rosa_rugosa	Rorug05G0011000
rosa_samantha	Rh5AG105600 Rh5BG101900 Rh5CG113700 Rh5DG100400
rosa_wichuraiana	Rw5G009200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	327
AccI	GTMKAC	1 cut(s)	154
AccII	CGCG	1 cut(s)	129
AciI	CCGC	7 cut(s)	118, 127, 138, 263, 331, 334, 682
AclWI	GGATC	3 cut(s)	354, 511, 876
AcvI	CACGTG	1 cut(s)	673
AdeI	CACNNNGTG	1 cut(s)	699
AfaI	GTAC	1 cut(s)	541
AfiI	CCNNNNNNNGG	2 cut(s)	327, 864
AgeI	ACCGGT	1 cut(s)	908
AgsI	TTSAA	3 cut(s)	406, 490, 641
AjnI	CCWGG	2 cut(s)	184, 782
AluBI	AGCT	1 cut(s)	525
AluI	AGCT	1 cut(s)	525
Alw21I	GWGCWC	3 cut(s)	227, 289, 573
AlwI	GGATC	3 cut(s)	354, 511, 876
AlwNI	CAGNNNCTG	1 cut(s)	97
Ama87I	CYCGRG	1 cut(s)	756
AoxI	GGCC	4 cut(s)	107, 339, 430, 509
ApeKI	GCWGC	3 cut(s)	48, 260, 580
AsiGI	ACCGGT	1 cut(s)	908
Asp700I	GAANNNNTTC	1 cut(s)	636
AspLEI	GCGC	2 cut(s)	123, 268
AspS9I	GGNCC	2 cut(s)	818, 854
AsuHPI	GGTGA	5 cut(s)	77, 289, 631, 745, 800
AvaI	CYCGRG	1 cut(s)	756
AvaII	GGWCC	2 cut(s)	818, 854
BanII	GRGCYC	1 cut(s)	193
BbrPI	CACGTG	1 cut(s)	673
BbsI	GAAGAC	1 cut(s)	548
Bbv12I	GWGCWC	3 cut(s)	227, 289, 573
BbvI	GCAGC	3 cut(s)	35, 272, 567
BccI	CCATC	5 cut(s)	128, 418, 452, 495, 622
BceAI	ACGGC	1 cut(s)	584
BcgI	CGANNNNNNTGC	2 cut(s)	456, 490
BciT130I	CCWGG	2 cut(s)	186, 784
BfaI	CTAG	3 cut(s)	77, 194, 864
BfmI	CTRYAG	1 cut(s)	6
BfoI	RGCGCY	1 cut(s)	124
BglI	GCCNNNNNGGC	1 cut(s)	115
BisI	GCNGC	8 cut(s)	49, 119, 139, 261, 264, 332, 335, 581
BlsI	GCNGC	8 cut(s)	50, 120, 140, 262, 265, 333, 336, 582
BmcAI	AGTACT	1 cut(s)	541
Bme1390I	CCNGG	2 cut(s)	186, 784
Bme18I	GGWCC	2 cut(s)	818, 854
BmeT110I	CYCGRG	1 cut(s)	756
BmgT120I	GGNCC	2 cut(s)	818, 854
BmiI	GGNNCC	2 cut(s)	183, 856
BmrFI	CCNGG	2 cut(s)	186, 784
BpiI	GAAGAC	1 cut(s)	548
BpuEI	CTTGAG	1 cut(s)	240
BsaAI	YACGTR	1 cut(s)	673
BsaBI	GATNNNNATC	1 cut(s)	15
BsaJI	CCNNGG	4 cut(s)	185, 342, 493, 783
BsaWI	WCCGGW	1 cut(s)	908
Bsc4I	CCNNNNNNNGG	2 cut(s)	327, 864
Bse118I	RCCGGY	1 cut(s)	908
Bse1I	ACTGG	1 cut(s)	363
Bse8I	GATNNNNATC	1 cut(s)	15
BseBI	CCWGG	2 cut(s)	186, 784
BseDI	CCNNGG	4 cut(s)	185, 342, 493, 783
BseGI	GGATG	3 cut(s)	463, 506, 732
BseJI	GATNNNNATC	1 cut(s)	15
BseLI	CCNNNNNNNGG	2 cut(s)	327, 864
BseMII	CTCAG	2 cut(s)	362, 504
BseNI	ACTGG	1 cut(s)	363
BseXI	GCAGC	3 cut(s)	35, 272, 567
BseYI	CCCAGC	1 cut(s)	383
BsgI	GTGCAG	1 cut(s)	566
Bsh1236I	CGCG	1 cut(s)	129
BshFI	GGCC	4 cut(s)	109, 341, 432, 511
BshTI	ACCGGT	1 cut(s)	908
BsiHKAI	GWGCWC	3 cut(s)	227, 289, 573
BsiHKCI	CYCGRG	1 cut(s)	756
BsiSI	CCGG	4 cut(s)	115, 174, 433, 909
BslFI	GGGAC	1 cut(s)	764
BslI	CCNNNNNNNGG	2 cut(s)	327, 864
BsmFI	GGGAC	1 cut(s)	764
BsnI	GGCC	4 cut(s)	109, 341, 432, 511
BsoBI	CYCGRG	1 cut(s)	756
Bsp1286I	GDGCHC	4 cut(s)	193, 227, 289, 573
Bsp143I	GATC	5 cut(s)	323, 346, 446, 516, 868
Bsp19I	CCATGG	1 cut(s)	342
BspACI	CCGC	7 cut(s)	118, 127, 138, 263, 331, 334, 682
BspANI	GGCC	4 cut(s)	109, 341, 432, 511
BspCNI	CTCAG	2 cut(s)	363, 505
BspFNI	CGCG	1 cut(s)	129
BspLI	GGNNCC	2 cut(s)	183, 856
BspPI	GGATC	3 cut(s)	354, 511, 876
BsrFI	RCCGGY	1 cut(s)	908
BsrI	ACTGG	1 cut(s)	363
BssAI	RCCGGY	1 cut(s)	908
BssECI	CCNNGG	4 cut(s)	185, 342, 493, 783
BssMI	GATC	5 cut(s)	323, 346, 446, 516, 868
BssT1I	CCWWGG	2 cut(s)	342, 493
Bst2UI	CCWGG	2 cut(s)	186, 784
Bst4CI	ACNGT	1 cut(s)	697
Bst6I	CTCTTC	1 cut(s)	698
BstBAI	YACGTR	1 cut(s)	673
BstC8I	GCNNGC	2 cut(s)	99, 339
BstDEI	CTNAG	2 cut(s)	371, 513
BstDSI	CCRYGG	1 cut(s)	342
BstF5I	GGATG	3 cut(s)	463, 506, 732
BstFNI	CGCG	1 cut(s)	129
BstH2I	RGCGCY	1 cut(s)	124
BstHHI	GCGC	2 cut(s)	123, 268
BstKTI	GATC	5 cut(s)	326, 349, 449, 519, 871
BstMBI	GATC	5 cut(s)	323, 346, 446, 516, 868
BstMWI	GCNNNNNNNGC	4 cut(s)	115, 135, 238, 577
BstNI	CCWGG	2 cut(s)	186, 784
BstSCI	CCNGG	2 cut(s)	184, 782
BstSFI	CTRYAG	1 cut(s)	6
BstUI	CGCG	1 cut(s)	129
BstV1I	GCAGC	3 cut(s)	35, 272, 567
BstV2I	GAAGAC	1 cut(s)	548
BstX2I	RGATCY	2 cut(s)	516, 868
BstYI	RGATCY	2 cut(s)	516, 868
BsuRI	GGCC	4 cut(s)	109, 341, 432, 511
BtgI	CCRYGG	1 cut(s)	342
BtsCI	GGATG	3 cut(s)	463, 506, 732
BtsIMutI	CAGTG	1 cut(s)	356
Cac8I	GCNNGC	2 cut(s)	99, 339
CaiI	CAGNNNCTG	1 cut(s)	97
CfoI	GCGC	2 cut(s)	123, 268
Cfr10I	RCCGGY	1 cut(s)	908
Cfr13I	GGNCC	2 cut(s)	818, 854
Csp6I	GTAC	1 cut(s)	540
CspAI	ACCGGT	1 cut(s)	908
CviAII	CATG	3 cut(s)	343, 588, 832
CviQI	GTAC	1 cut(s)	540
DdeI	CTNAG	2 cut(s)	371, 513
DpnI	GATC	5 cut(s)	325, 348, 448, 518, 870
DpnII	GATC	5 cut(s)	323, 346, 446, 516, 868
DraIII	CACNNNGTG	1 cut(s)	699
Eam1104I	CTCTTC	1 cut(s)	698
EarI	CTCTTC	1 cut(s)	698
Eco130I	CCWWGG	2 cut(s)	342, 493
Eco147I	AGGCCT	1 cut(s)	109
Eco24I	GRGCYC	1 cut(s)	193
Eco47I	GGWCC	2 cut(s)	818, 854
Eco72I	CACGTG	1 cut(s)	673
Eco88I	CYCGRG	1 cut(s)	756
EcoRII	CCWGG	2 cut(s)	184, 782
EcoT14I	CCWWGG	2 cut(s)	342, 493
EcoT38I	GRGCYC	1 cut(s)	193
ErhI	CCWWGG	2 cut(s)	342, 493
FaeI	CATG	3 cut(s)	346, 591, 835
FaiI	YATR	9 cut(s)	344, 353, 589, 645, 687, 689, 833, 860, 884
FaqI	GGGAC	1 cut(s)	764
FatI	CATG	3 cut(s)	342, 587, 831
FauI	CCCGC	1 cut(s)	134
FblI	GTMKAC	1 cut(s)	154
Fnu4HI	GCNGC	8 cut(s)	49, 119, 139, 261, 264, 332, 335, 581
FokI	GGATG	3 cut(s)	470, 513, 739
FriOI	GRGCYC	1 cut(s)	193
Fsp4HI	GCNGC	8 cut(s)	49, 119, 139, 261, 264, 332, 335, 581
FspBI	CTAG	3 cut(s)	77, 194, 864
GlaI	GCGC	2 cut(s)	122, 267
GluI	GCNGC	8 cut(s)	49, 119, 139, 261, 264, 332, 335, 581
GsaI	CCCAGC	1 cut(s)	387
HaeII	RGCGCY	1 cut(s)	124
HaeIII	GGCC	4 cut(s)	109, 341, 432, 511
HapII	CCGG	4 cut(s)	115, 174, 433, 909
HhaI	GCGC	2 cut(s)	123, 268
Hin1II	CATG	3 cut(s)	346, 591, 835
Hin6I	GCGC	2 cut(s)	121, 266
HinP1I	GCGC	2 cut(s)	121, 266
HincII	GTYRAC	1 cut(s)	155
HindII	GTYRAC	1 cut(s)	155
HinfI	GANTC	2 cut(s)	198, 412
HpaII	CCGG	4 cut(s)	115, 174, 433, 909
HphI	GGTGA	5 cut(s)	77, 289, 631, 745, 800
Hpy166II	GTNNAC	1 cut(s)	155
Hpy188I	TCNGA	3 cut(s)	55, 372, 446
Hpy188III	TCNNGA	3 cut(s)	416, 749, 758
Hpy8I	GTNNAC	1 cut(s)	155
Hpy99I	CGWCG	4 cut(s)	156, 159, 304, 605
HpyAV	CCTTC	2 cut(s)	274, 300
HpyCH4III	ACNGT	1 cut(s)	697
HpyCH4IV	ACGT	2 cut(s)	272, 672
HpyCH4V	TGCA	3 cut(s)	467, 583, 670
HpyF10VI	GCNNNNNNNGC	4 cut(s)	115, 135, 238, 577
HpyF3I	CTNAG	2 cut(s)	371, 513
HpySE526I	ACGT	2 cut(s)	272, 672
Hsp92II	CATG	3 cut(s)	346, 591, 835
HspAI	GCGC	2 cut(s)	121, 266
Kzo9I	GATC	5 cut(s)	323, 346, 446, 516, 868
LmnI	GCTCC	2 cut(s)	56, 128
Lsp1109I	GCAGC	3 cut(s)	35, 272, 567
MaeI	CTAG	3 cut(s)	77, 194, 864
MaeII	ACGT	2 cut(s)	272, 672
MaeIII	GTNAC	4 cut(s)	316, 733, 838, 848
MalI	GATC	5 cut(s)	325, 348, 448, 518, 870
MboI	GATC	5 cut(s)	323, 346, 446, 516, 868
MboII	GAAGA	4 cut(s)	193, 548, 637, 715
MflI	RGATCY	2 cut(s)	516, 868
MhlI	GDGCHC	4 cut(s)	193, 227, 289, 573
MluCI	AATT	4 cut(s)	39, 419, 450, 802
MmeI	TCCRAC	2 cut(s)	63, 796
MroXI	GAANNNNTTC	1 cut(s)	636
MseI	TTAA	1 cut(s)	15
MspA1I	CMGCKG	1 cut(s)	263
MspI	CCGG	4 cut(s)	115, 174, 433, 909
MspR9I	CCNGG	2 cut(s)	186, 784
MvaI	CCWGG	2 cut(s)	186, 784
MvnI	CGCG	1 cut(s)	129
MwoI	GCNNNNNNNGC	4 cut(s)	115, 135, 238, 577
NcoI	CCATGG	1 cut(s)	342
NdeII	GATC	5 cut(s)	323, 346, 446, 516, 868
NlaIII	CATG	3 cut(s)	346, 591, 835
NlaIV	GGNNCC	2 cut(s)	183, 856
NmeAIII	GCCGAG	1 cut(s)	268
NmuCI	GTSAC	3 cut(s)	316, 733, 848
PceI	AGGCCT	1 cut(s)	109
PdmI	GAANNNNTTC	1 cut(s)	636
PfeI	GAWTC	2 cut(s)	198, 412
PflFI	GACNNNGTC	1 cut(s)	739
PflMI	CCANNNNNTGG	1 cut(s)	327
PinAI	ACCGGT	1 cut(s)	908
PkrI	GCNGC	8 cut(s)	50, 120, 140, 262, 265, 333, 336, 582
PmaCI	CACGTG	1 cut(s)	673
PmlI	CACGTG	1 cut(s)	673
Ppu21I	YACGTR	1 cut(s)	673
Psp6I	CCWGG	2 cut(s)	184, 782
PspCI	CACGTG	1 cut(s)	673
PspFI	CCCAGC	1 cut(s)	383
PspGI	CCWGG	2 cut(s)	184, 782
PspN4I	GGNNCC	2 cut(s)	183, 856
PspPI	GGNCC	2 cut(s)	818, 854
PstNI	CAGNNNCTG	1 cut(s)	97
PsuI	RGATCY	2 cut(s)	516, 868
PsyI	GACNNNGTC	1 cut(s)	739
RsaI	GTAC	1 cut(s)	541
RsaNI	GTAC	1 cut(s)	540
SalI	GTCGAC	1 cut(s)	153
SaqAI	TTAA	1 cut(s)	15
SatI	GCNGC	8 cut(s)	49, 119, 139, 261, 264, 332, 335, 581
Sau3AI	GATC	5 cut(s)	323, 346, 446, 516, 868
Sau96I	GGNCC	2 cut(s)	818, 854
ScaI	AGTACT	1 cut(s)	541
ScrFI	CCNGG	2 cut(s)	186, 784
SduI	GDGCHC	4 cut(s)	193, 227, 289, 573
SfcI	CTRYAG	1 cut(s)	6
SgrDI	CGTCGACG	1 cut(s)	153
SinI	GGWCC	2 cut(s)	818, 854
SmlI	CTYRAG	1 cut(s)	255
SmoI	CTYRAG	1 cut(s)	255
Sse9I	AATT	4 cut(s)	39, 419, 450, 802
SseBI	AGGCCT	1 cut(s)	109
SsiI	CCGC	7 cut(s)	118, 127, 138, 263, 331, 334, 682
SspMI	CTAG	3 cut(s)	77, 194, 864
StuI	AGGCCT	1 cut(s)	109
StyD4I	CCNGG	2 cut(s)	184, 782
StyI	CCWWGG	2 cut(s)	342, 493
TaaI	ACNGT	1 cut(s)	697
TaiI	ACGT	2 cut(s)	275, 675
TaqI	TCGA	2 cut(s)	154, 417
TaqII	GACCGA	1 cut(s)	593
TasI	AATT	4 cut(s)	39, 419, 450, 802
TatI	WGTACW	1 cut(s)	539
TauI	GCSGC	5 cut(s)	121, 141, 266, 334, 337
TfiI	GAWTC	2 cut(s)	198, 412
Tru1I	TTAA	1 cut(s)	15
Tru9I	TTAA	1 cut(s)	15
TscAI	CASTG	1 cut(s)	363
TseFI	GTSAC	3 cut(s)	316, 733, 848
TseI	GCWGC	3 cut(s)	48, 260, 580
Tsp45I	GTSAC	3 cut(s)	316, 733, 848
TspDTI	ATGAA	2 cut(s)	236, 820
TspGWI	ACGGA	1 cut(s)	867
TspRI	CASTG	1 cut(s)	363
Tth111I	GACNNNGTC	1 cut(s)	739
Van91I	CCANNNNNTGG	1 cut(s)	327
VpaK11BI	GGWCC	2 cut(s)	818, 854
XcmI	CCANNNNNNNNNTGG	2 cut(s)	349, 528
XmiI	GTMKAC	1 cut(s)	154
XmnI	GAANNNNTTC	1 cut(s)	636
XspI	CTAG	3 cut(s)	77, 194, 864
ZrmI	AGTACT	1 cut(s)	541

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.