Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0010384

Physical Location & Seq

Genomic Coordinates Reverse (-)

3798418 .. 3801624

Gene Structure 3207 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G078100.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGGCAAAGGAAACTAAAAAGTCTCAGCAATCTCGCTCGTCTTCCTCCCCGAGGGCACCCACAGAAGCGTCAACTGGGCAGATGGTGTTGAAGGTCAAACAAAGTGAGGGGACAAGGAGGTCAGCAAGGTTAAGCAGCAGTGAGGGGAAGAGAGCCATTTCAGTACAGAAGTCCAAAACCAAGCAGAAGAAAAAAAGTGCAAAACTTGATGCCAAGATTCCCAAGAAACCACCAACTGCTTTCTTCTATTTCTTGGAGGATTTTCGTAAGGAATTTCAAGAACAAAATCCAGGTGTCAAGTCAATGCGCGATATTGGAAGGGCATGTGGAGAGAAGTGGAAAACAATGGCATATGAGGAAAAGGTTCAATATTATGATATAGCGATGGAGAAACGGGCGGAGTTTGACAAGGCCATGGCAGAATATACAGAGAGAAAGGAAAGTGGTGAGGATGAAGAAACTGAGGATGAGGAAGAGGAAGATTGGTCTCCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMG_box

Protein Analysis

165

Amino Acids

18.88

Weight (kDa)

8.98

Isoelectric Point (pI)

72.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010384)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34450 AT2G34450 AT2G34450 AT2G34450
fragaria_vesca	FvH4_3g05880
malus_domestica	MD05G1286800.v1.1 MD10G1264300.v1.1
prunus_persica	Prupe.4G078100_v2.0.a1 Prupe.4G078100_v2.0.a1
pyrus_communis	pycom05g26520
rosa_chinensis	RchiOBHm_Chr5g0013561
rosa_laevigata	RLG00000032028
rosa_multiflora	Rmu_sc0002573.1_g000020 Rmu_sc0003458.1_g000025
rosa_roxburghii	Rroxscaffold_1G00063010
rosa_rugosa	Rorug05G0011000
rosa_samantha	Rh5AG105600 Rh5BG101900 Rh5CG113700 Rh5DG100400
rosa_wichuraiana	Rw5G009200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	118
AccB1I	GGYRCC	1 cut(s)	55
AccII	CGCG	1 cut(s)	309
AciI	CCGC	1 cut(s)	398
AcsI	RAATTY	1 cut(s)	272
AfaI	GTAC	1 cut(s)	165
AfiI	CCNNNNNNNGG	1 cut(s)	51
AgsI	TTSAA	3 cut(s)	91, 278, 368
AjnI	CCWGG	1 cut(s)	289
Alw26I	GTCTC	1 cut(s)	27
Ama87I	CYCGRG	1 cut(s)	49
AoxI	GGCC	1 cut(s)	411
ApeKI	GCWGC	1 cut(s)	135
ApoI	RAATTY	1 cut(s)	272
Asp700I	GAANNNNTTC	1 cut(s)	363
AspLEI	GCGC	1 cut(s)	309
AsuHPI	GGTGA	1 cut(s)	458
AvaI	CYCGRG	1 cut(s)	49
BaeGI	GKGCMC	1 cut(s)	58
BanI	GGYRCC	1 cut(s)	55
BbsI	GAAGAC	1 cut(s)	33
BbvI	GCAGC	1 cut(s)	147
BccI	CCATC	2 cut(s)	76, 379
BciT130I	CCWGG	1 cut(s)	291
BcoDI	GTCTC	1 cut(s)	27
BisI	GCNGC	1 cut(s)	136
BlsI	GCNGC	1 cut(s)	137
Bme1390I	CCNGG	1 cut(s)	291
BmeT110I	CYCGRG	1 cut(s)	49
BmiI	GGNNCC	1 cut(s)	57
BmrFI	CCNGG	1 cut(s)	291
BmrI	ACTGGG	1 cut(s)	84
BmsI	GCATC	1 cut(s)	199
BmuI	ACTGGG	1 cut(s)	84
BpiI	GAAGAC	1 cut(s)	33
BsaJI	CCNNGG	2 cut(s)	50, 414
Bsc4I	CCNNNNNNNGG	1 cut(s)	51
Bse1I	ACTGG	1 cut(s)	79
BseBI	CCWGG	1 cut(s)	291
BseDI	CCNNGG	2 cut(s)	50, 414
BseGI	GGATG	2 cut(s)	457, 472
BseLI	CCNNNNNNNGG	1 cut(s)	51
BseMII	CTCAG	2 cut(s)	38, 453
BseNI	ACTGG	1 cut(s)	79
BseSI	GKGCMC	1 cut(s)	58
BseXI	GCAGC	1 cut(s)	147
Bsh1236I	CGCG	1 cut(s)	309
BshFI	GGCC	1 cut(s)	413
BshNI	GGYRCC	1 cut(s)	55
BsiHKCI	CYCGRG	1 cut(s)	49
BslFI	GGGAC	1 cut(s)	124
BslI	CCNNNNNNNGG	1 cut(s)	51
BsmAI	GTCTC	1 cut(s)	27
BsmFI	GGGAC	1 cut(s)	124
BsnI	GGCC	1 cut(s)	413
BsoBI	CYCGRG	1 cut(s)	49
Bsp1286I	GDGCHC	1 cut(s)	58
Bsp19I	CCATGG	1 cut(s)	414
BspACI	CCGC	1 cut(s)	398
BspANI	GGCC	1 cut(s)	413
BspCNI	CTCAG	2 cut(s)	37, 454
BspFNI	CGCG	1 cut(s)	309
BspLI	GGNNCC	1 cut(s)	57
BspT107I	GGYRCC	1 cut(s)	55
BsrI	ACTGG	1 cut(s)	79
BssECI	CCNNGG	2 cut(s)	50, 414
BssT1I	CCWWGG	1 cut(s)	414
Bst2UI	CCWGG	1 cut(s)	291
Bst6I	CTCTTC	2 cut(s)	143, 468
BstDEI	CTNAG	2 cut(s)	24, 462
BstDSI	CCRYGG	1 cut(s)	414
BstENI	CCTNNNNNAGG	1 cut(s)	49
BstF5I	GGATG	2 cut(s)	457, 472
BstFNI	CGCG	1 cut(s)	309
BstHHI	GCGC	1 cut(s)	309
BstMAI	GTCTC	1 cut(s)	27
BstNI	CCWGG	1 cut(s)	291
BstNSI	RCATGY	1 cut(s)	327
BstSCI	CCNGG	1 cut(s)	289
BstSLI	GKGCMC	1 cut(s)	58
BstUI	CGCG	1 cut(s)	309
BstV1I	GCAGC	1 cut(s)	147
BstV2I	GAAGAC	1 cut(s)	33
BsuRI	GGCC	1 cut(s)	413
BtgI	CCRYGG	1 cut(s)	414
BtgZI	GCGATG	1 cut(s)	398
BtsCI	GGATG	2 cut(s)	457, 472
BtsI	GCAGTG	1 cut(s)	145
BtsIMutI	CAGTG	1 cut(s)	145
CfoI	GCGC	1 cut(s)	309
CseI	GACGC	1 cut(s)	57
Csp6I	GTAC	1 cut(s)	164
CviAII	CATG	2 cut(s)	324, 415
CviJI	RGCY	2 cut(s)	155, 413
CviKI_1	RGCY	2 cut(s)	155, 413
CviQI	GTAC	1 cut(s)	164
DdeI	CTNAG	2 cut(s)	24, 462
DrdI	GACNNNNNNGTC	1 cut(s)	118
DseDI	GACNNNNNNGTC	1 cut(s)	118
Eam1104I	CTCTTC	2 cut(s)	143, 468
EarI	CTCTTC	2 cut(s)	143, 468
EciI	GGCGGA	1 cut(s)	413
Eco130I	CCWWGG	1 cut(s)	414
Eco88I	CYCGRG	1 cut(s)	49
EcoNI	CCTNNNNNAGG	1 cut(s)	49
EcoRII	CCWGG	1 cut(s)	289
EcoT14I	CCWWGG	1 cut(s)	414
ErhI	CCWWGG	1 cut(s)	414
FaeI	CATG	2 cut(s)	327, 418
FaiI	YATR	7 cut(s)	325, 352, 354, 375, 380, 416, 426
FaqI	GGGAC	1 cut(s)	124
FatI	CATG	2 cut(s)	323, 414
FauNDI	CATATG	1 cut(s)	352
Fnu4HI	GCNGC	1 cut(s)	136
FokI	GGATG	2 cut(s)	464, 479
Fsp4HI	GCNGC	1 cut(s)	136
GlaI	GCGC	1 cut(s)	308
GluI	GCNGC	1 cut(s)	136
HaeIII	GGCC	1 cut(s)	413
HgaI	GACGC	1 cut(s)	57
HhaI	GCGC	1 cut(s)	309
Hin1II	CATG	2 cut(s)	327, 418
Hin6I	GCGC	1 cut(s)	307
HinP1I	GCGC	1 cut(s)	307
HincII	GTYRAC	1 cut(s)	72
HindII	GTYRAC	1 cut(s)	72
HinfI	GANTC	1 cut(s)	217
HphI	GGTGA	1 cut(s)	458
Hpy166II	GTNNAC	1 cut(s)	72
Hpy188III	TCNNGA	1 cut(s)	278
Hpy8I	GTNNAC	1 cut(s)	72
HpyAV	CCTTC	2 cut(s)	85, 312
HpyCH4V	TGCA	1 cut(s)	200
HpyF3I	CTNAG	2 cut(s)	24, 462
Hsp92II	CATG	2 cut(s)	327, 418
HspAI	GCGC	1 cut(s)	307
LpnPI	CCDG	3 cut(s)	60, 276, 303
Lsp1109I	GCAGC	1 cut(s)	147
LweI	GCATC	1 cut(s)	199
MboII	GAAGA	7 cut(s)	33, 160, 199, 235, 467, 485, 491
MhlI	GDGCHC	1 cut(s)	58
MluCI	AATT	1 cut(s)	272
MroXI	GAANNNNTTC	1 cut(s)	363
MseI	TTAA	1 cut(s)	131
MspR9I	CCNGG	1 cut(s)	291
MvaI	CCWGG	1 cut(s)	291
MvnI	CGCG	1 cut(s)	309
NcoI	CCATGG	1 cut(s)	414
NdeI	CATATG	1 cut(s)	352
NlaIII	CATG	2 cut(s)	327, 418
NlaIV	GGNNCC	1 cut(s)	57
NspI	RCATGY	1 cut(s)	327
PdmI	GAANNNNTTC	1 cut(s)	363
PfeI	GAWTC	1 cut(s)	217
PkrI	GCNGC	1 cut(s)	137
Psp6I	CCWGG	1 cut(s)	289
PspGI	CCWGG	1 cut(s)	289
PspN4I	GGNNCC	1 cut(s)	57
RsaI	GTAC	1 cut(s)	165
RsaNI	GTAC	1 cut(s)	164
SaqAI	TTAA	1 cut(s)	131
SatI	GCNGC	1 cut(s)	136
ScrFI	CCNGG	1 cut(s)	291
SduI	GDGCHC	1 cut(s)	58
SetI	ASST	5 cut(s)	96, 122, 131, 295, 366
SfaNI	GCATC	1 cut(s)	199
Sse9I	AATT	1 cut(s)	272
SsiI	CCGC	1 cut(s)	398
SspI	AATATT	1 cut(s)	371
StyD4I	CCNGG	1 cut(s)	289
StyI	CCWWGG	1 cut(s)	414
TasI	AATT	1 cut(s)	272
TatI	WGTACW	1 cut(s)	163
TfiI	GAWTC	1 cut(s)	217
Tru1I	TTAA	1 cut(s)	131
Tru9I	TTAA	1 cut(s)	131
TscAI	CASTG	1 cut(s)	145
TseI	GCWGC	1 cut(s)	135
TspDTI	ATGAA	1 cut(s)	468
TspRI	CASTG	1 cut(s)	145
XagI	CCTNNNNNAGG	1 cut(s)	49
XapI	RAATTY	1 cut(s)	272
XceI	RCATGY	1 cut(s)	327
XmnI	GAANNNNTTC	1 cut(s)	363

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.